Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02790 and HMPREF1078_RS02795 are separated by 8 nucleotides HMPREF1078_RS02795 and HMPREF1078_RS02800 are separated by 259 nucleotides HMPREF1078_RS02800 and HMPREF1078_RS02805 overlap by 4 nucleotides HMPREF1078_RS02805 and HMPREF1078_RS02815 are separated by 314 nucleotides
HMPREF1078_RS02790: HMPREF1078_RS02790 - HigA family addiction module antitoxin, at 681,818 to 682,150
_RS02790
HMPREF1078_RS02795: HMPREF1078_RS02795 - type II toxin-antitoxin system RelE/ParE family toxin, at 682,159 to 682,476
_RS02795
HMPREF1078_RS02800: HMPREF1078_RS02800 - hypothetical protein, at 682,736 to 683,113
_RS02800
HMPREF1078_RS02805: HMPREF1078_RS02805 - hypothetical protein, at 683,110 to 683,415
_RS02805
HMPREF1078_RS02815: HMPREF1078_RS02815 - hypothetical protein, at 683,730 to 684,197
_RS02815
Position (kb) 682
683
684 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 681.741 kb on - strand at 681.779 kb on + strand at 681.783 kb on - strand at 681.788 kb on - strand at 681.795 kb on + strand at 681.795 kb on + strand at 681.795 kb on + strand at 681.799 kb on + strand at 681.800 kb on - strand at 681.843 kb on - strand at 681.869 kb on - strand, within HMPREF1078_RS02790 at 681.869 kb on - strand, within HMPREF1078_RS02790 at 681.869 kb on - strand, within HMPREF1078_RS02790 at 681.872 kb on - strand, within HMPREF1078_RS02790 at 681.872 kb on - strand, within HMPREF1078_RS02790 at 681.872 kb on - strand, within HMPREF1078_RS02790 at 682.177 kb on - strand at 682.177 kb on - strand at 682.204 kb on + strand, within HMPREF1078_RS02795 at 682.205 kb on - strand, within HMPREF1078_RS02795 at 682.233 kb on + strand, within HMPREF1078_RS02795 at 682.234 kb on - strand, within HMPREF1078_RS02795 at 682.276 kb on - strand, within HMPREF1078_RS02795 at 682.284 kb on + strand, within HMPREF1078_RS02795 at 682.304 kb on + strand, within HMPREF1078_RS02795 at 682.342 kb on - strand, within HMPREF1078_RS02795 at 682.426 kb on - strand, within HMPREF1078_RS02795 at 682.431 kb on - strand, within HMPREF1078_RS02795 at 682.435 kb on - strand, within HMPREF1078_RS02795 at 682.436 kb on + strand, within HMPREF1078_RS02795 at 682.470 kb on + strand at 682.476 kb on + strand at 682.477 kb on - strand at 682.477 kb on - strand at 682.545 kb on - strand at 682.557 kb on + strand at 682.589 kb on + strand at 682.590 kb on - strand at 682.624 kb on + strand at 682.624 kb on + strand at 682.674 kb on + strand at 682.691 kb on + strand at 682.721 kb on + strand at 682.751 kb on - strand at 682.801 kb on - strand, within HMPREF1078_RS02800 at 682.801 kb on - strand, within HMPREF1078_RS02800 at 682.825 kb on - strand, within HMPREF1078_RS02800 at 682.855 kb on - strand, within HMPREF1078_RS02800 at 682.885 kb on + strand, within HMPREF1078_RS02800 at 682.885 kb on + strand, within HMPREF1078_RS02800 at 682.885 kb on + strand, within HMPREF1078_RS02800 at 682.885 kb on + strand, within HMPREF1078_RS02800 at 682.886 kb on - strand, within HMPREF1078_RS02800 at 682.888 kb on - strand, within HMPREF1078_RS02800 at 682.901 kb on - strand, within HMPREF1078_RS02800 at 682.911 kb on + strand, within HMPREF1078_RS02800 at 682.923 kb on + strand, within HMPREF1078_RS02800 at 682.924 kb on - strand, within HMPREF1078_RS02800 at 682.937 kb on + strand, within HMPREF1078_RS02800 at 682.938 kb on - strand, within HMPREF1078_RS02800 at 682.941 kb on + strand, within HMPREF1078_RS02800 at 682.941 kb on + strand, within HMPREF1078_RS02800 at 682.941 kb on + strand, within HMPREF1078_RS02800 at 682.942 kb on - strand, within HMPREF1078_RS02800 at 682.943 kb on + strand, within HMPREF1078_RS02800 at 682.943 kb on + strand, within HMPREF1078_RS02800 at 682.943 kb on + strand, within HMPREF1078_RS02800 at 682.943 kb on + strand, within HMPREF1078_RS02800 at 682.943 kb on + strand, within HMPREF1078_RS02800 at 682.944 kb on - strand, within HMPREF1078_RS02800 at 682.987 kb on + strand, within HMPREF1078_RS02800 at 682.987 kb on + strand, within HMPREF1078_RS02800 at 683.005 kb on + strand, within HMPREF1078_RS02800 at 683.052 kb on + strand, within HMPREF1078_RS02800 at 683.053 kb on - strand, within HMPREF1078_RS02800 at 683.053 kb on - strand, within HMPREF1078_RS02800 at 683.053 kb on - strand, within HMPREF1078_RS02800 at 683.053 kb on - strand, within HMPREF1078_RS02800 at 683.420 kb on - strand at 683.458 kb on - strand at 683.458 kb on - strand at 683.491 kb on - strand at 683.493 kb on - strand at 683.514 kb on + strand at 683.514 kb on + strand at 683.515 kb on - strand at 683.515 kb on - strand at 683.515 kb on - strand at 683.551 kb on - strand at 683.569 kb on - strand at 683.601 kb on - strand at 683.607 kb on + strand at 683.607 kb on + strand at 683.613 kb on - strand at 683.613 kb on - strand at 683.613 kb on - strand at 683.613 kb on - strand at 683.613 kb on - strand at 683.617 kb on - strand at 683.617 kb on - strand at 683.617 kb on - strand at 683.628 kb on + strand at 683.628 kb on + strand at 683.628 kb on + strand at 683.629 kb on - strand at 683.629 kb on - strand at 683.631 kb on - strand at 683.632 kb on + strand at 683.632 kb on + strand at 683.632 kb on + strand at 683.632 kb on + strand at 683.633 kb on - strand at 683.633 kb on - strand at 683.633 kb on - strand at 683.633 kb on - strand at 683.633 kb on - strand at 683.666 kb on - strand at 683.671 kb on + strand at 683.672 kb on - strand at 683.672 kb on - strand at 683.677 kb on + strand at 683.677 kb on + strand at 683.678 kb on - strand at 683.680 kb on + strand at 683.681 kb on - strand at 683.684 kb on - strand at 683.695 kb on + strand at 683.696 kb on - strand at 683.696 kb on - strand at 683.722 kb on - strand at 683.732 kb on - strand at 683.734 kb on - strand at 683.751 kb on + strand at 683.751 kb on + strand at 683.751 kb on + strand at 683.758 kb on + strand at 683.758 kb on + strand at 683.758 kb on + strand at 683.758 kb on + strand at 683.761 kb on - strand at 683.781 kb on + strand, within HMPREF1078_RS02815 at 683.781 kb on + strand, within HMPREF1078_RS02815 at 683.781 kb on + strand, within HMPREF1078_RS02815 at 683.788 kb on + strand, within HMPREF1078_RS02815 at 683.788 kb on + strand, within HMPREF1078_RS02815 at 683.788 kb on + strand, within HMPREF1078_RS02815 at 683.788 kb on + strand, within HMPREF1078_RS02815 at 683.788 kb on + strand, within HMPREF1078_RS02815 at 683.789 kb on - strand, within HMPREF1078_RS02815 at 683.789 kb on - strand, within HMPREF1078_RS02815 at 683.792 kb on + strand, within HMPREF1078_RS02815 at 683.792 kb on + strand, within HMPREF1078_RS02815 at 683.792 kb on + strand, within HMPREF1078_RS02815 at 683.792 kb on + strand, within HMPREF1078_RS02815 at 683.792 kb on + strand, within HMPREF1078_RS02815 at 683.793 kb on - strand, within HMPREF1078_RS02815 at 683.793 kb on - strand, within HMPREF1078_RS02815 at 683.793 kb on - strand, within HMPREF1078_RS02815 at 683.793 kb on - strand, within HMPREF1078_RS02815 at 683.793 kb on - strand, within HMPREF1078_RS02815 at 683.793 kb on - strand, within HMPREF1078_RS02815 at 683.793 kb on - strand, within HMPREF1078_RS02815 at 683.794 kb on + strand, within HMPREF1078_RS02815 at 683.794 kb on + strand, within HMPREF1078_RS02815 at 683.823 kb on + strand, within HMPREF1078_RS02815 at 683.823 kb on + strand, within HMPREF1078_RS02815 at 683.824 kb on - strand, within HMPREF1078_RS02815 at 683.824 kb on - strand, within HMPREF1078_RS02815 at 683.836 kb on - strand, within HMPREF1078_RS02815 at 683.858 kb on + strand, within HMPREF1078_RS02815 at 683.858 kb on + strand, within HMPREF1078_RS02815 at 683.869 kb on - strand, within HMPREF1078_RS02815 at 683.874 kb on - strand, within HMPREF1078_RS02815 at 683.874 kb on - strand, within HMPREF1078_RS02815 at 683.882 kb on + strand, within HMPREF1078_RS02815 at 683.883 kb on - strand, within HMPREF1078_RS02815 at 683.884 kb on + strand, within HMPREF1078_RS02815 at 683.928 kb on - strand, within HMPREF1078_RS02815 at 683.928 kb on - strand, within HMPREF1078_RS02815 at 683.928 kb on - strand, within HMPREF1078_RS02815 at 683.959 kb on - strand, within HMPREF1078_RS02815 at 683.959 kb on - strand, within HMPREF1078_RS02815 at 683.959 kb on - strand, within HMPREF1078_RS02815 at 683.983 kb on - strand, within HMPREF1078_RS02815 at 683.983 kb on - strand, within HMPREF1078_RS02815 at 683.983 kb on - strand, within HMPREF1078_RS02815 at 683.983 kb on - strand, within HMPREF1078_RS02815 at 683.987 kb on + strand, within HMPREF1078_RS02815 at 683.988 kb on - strand, within HMPREF1078_RS02815 at 683.988 kb on - strand, within HMPREF1078_RS02815 at 683.996 kb on - strand, within HMPREF1078_RS02815 at 684.031 kb on + strand, within HMPREF1078_RS02815 at 684.031 kb on + strand, within HMPREF1078_RS02815 at 684.031 kb on + strand, within HMPREF1078_RS02815 at 684.032 kb on - strand, within HMPREF1078_RS02815 at 684.032 kb on - strand, within HMPREF1078_RS02815 at 684.032 kb on - strand, within HMPREF1078_RS02815 at 684.032 kb on - strand, within HMPREF1078_RS02815 at 684.055 kb on + strand, within HMPREF1078_RS02815 at 684.064 kb on - strand, within HMPREF1078_RS02815 at 684.092 kb on - strand, within HMPREF1078_RS02815 at 684.092 kb on - strand, within HMPREF1078_RS02815
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 681,741 - -3.0 681,779 + +0.9 681,783 - +0.6 681,788 - +0.8 681,795 + +1.0 681,795 + +0.5 681,795 + -1.3 681,799 + +0.7 681,800 - -0.5 681,843 - -1.2 681,869 - HMPREF1078_RS02790 0.15 -0.3 681,869 - HMPREF1078_RS02790 0.15 -2.3 681,869 - HMPREF1078_RS02790 0.15 -2.0 681,872 - HMPREF1078_RS02790 0.16 -0.9 681,872 - HMPREF1078_RS02790 0.16 +0.2 681,872 - HMPREF1078_RS02790 0.16 -2.5 682,177 - -1.7 682,177 - -2.6 682,204 + HMPREF1078_RS02795 0.14 -0.9 682,205 - HMPREF1078_RS02795 0.14 -0.1 682,233 + HMPREF1078_RS02795 0.23 -1.1 682,234 - HMPREF1078_RS02795 0.24 +1.8 682,276 - HMPREF1078_RS02795 0.37 -0.2 682,284 + HMPREF1078_RS02795 0.39 +0.4 682,304 + HMPREF1078_RS02795 0.46 +0.0 682,342 - HMPREF1078_RS02795 0.58 -0.4 682,426 - HMPREF1078_RS02795 0.84 +0.9 682,431 - HMPREF1078_RS02795 0.86 +0.5 682,435 - HMPREF1078_RS02795 0.87 -1.1 682,436 + HMPREF1078_RS02795 0.87 -2.0 682,470 + +0.4 682,476 + -1.5 682,477 - -0.6 682,477 - -0.1 682,545 - +0.7 682,557 + -2.9 682,589 + -0.1 682,590 - -0.8 682,624 + -1.5 682,624 + -0.3 682,674 + -0.7 682,691 + -0.3 682,721 + -1.4 682,751 - +1.8 682,801 - HMPREF1078_RS02800 0.17 -0.3 682,801 - HMPREF1078_RS02800 0.17 -0.5 682,825 - HMPREF1078_RS02800 0.24 +0.4 682,855 - HMPREF1078_RS02800 0.31 +0.7 682,885 + HMPREF1078_RS02800 0.39 -0.7 682,885 + HMPREF1078_RS02800 0.39 -0.5 682,885 + HMPREF1078_RS02800 0.39 -0.9 682,885 + HMPREF1078_RS02800 0.39 -0.7 682,886 - HMPREF1078_RS02800 0.40 +1.5 682,888 - HMPREF1078_RS02800 0.40 +0.7 682,901 - HMPREF1078_RS02800 0.44 -1.2 682,911 + HMPREF1078_RS02800 0.46 -3.0 682,923 + HMPREF1078_RS02800 0.49 -0.6 682,924 - HMPREF1078_RS02800 0.50 -0.1 682,937 + HMPREF1078_RS02800 0.53 -0.7 682,938 - HMPREF1078_RS02800 0.53 -0.7 682,941 + HMPREF1078_RS02800 0.54 -1.5 682,941 + HMPREF1078_RS02800 0.54 -1.2 682,941 + HMPREF1078_RS02800 0.54 -2.8 682,942 - HMPREF1078_RS02800 0.54 +1.0 682,943 + HMPREF1078_RS02800 0.55 +0.2 682,943 + HMPREF1078_RS02800 0.55 -0.1 682,943 + HMPREF1078_RS02800 0.55 -0.0 682,943 + HMPREF1078_RS02800 0.55 -0.1 682,943 + HMPREF1078_RS02800 0.55 +7.6 682,944 - HMPREF1078_RS02800 0.55 -2.4 682,987 + HMPREF1078_RS02800 0.66 -0.2 682,987 + HMPREF1078_RS02800 0.66 -0.1 683,005 + HMPREF1078_RS02800 0.71 -2.6 683,052 + HMPREF1078_RS02800 0.84 -0.6 683,053 - HMPREF1078_RS02800 0.84 +0.7 683,053 - HMPREF1078_RS02800 0.84 -1.9 683,053 - HMPREF1078_RS02800 0.84 +0.5 683,053 - HMPREF1078_RS02800 0.84 -1.0 683,420 - -1.0 683,458 - -0.9 683,458 - +0.5 683,491 - +0.9 683,493 - -1.1 683,514 + +1.2 683,514 + +0.1 683,515 - -0.6 683,515 - -0.7 683,515 - -0.7 683,551 - +0.7 683,569 - +0.1 683,601 - -1.2 683,607 + -0.7 683,607 + +0.1 683,613 - -1.6 683,613 - +0.4 683,613 - -0.9 683,613 - +0.9 683,613 - +1.4 683,617 - +1.9 683,617 - -0.0 683,617 - -1.1 683,628 + -0.3 683,628 + +1.2 683,628 + +0.0 683,629 - -0.9 683,629 - -0.8 683,631 - +2.7 683,632 + -1.5 683,632 + +0.6 683,632 + -1.7 683,632 + +0.9 683,633 - -0.5 683,633 - +0.9 683,633 - +0.2 683,633 - +0.5 683,633 - -3.0 683,666 - +0.3 683,671 + +2.3 683,672 - -1.7 683,672 - +0.7 683,677 + -0.2 683,677 + +0.3 683,678 - +0.3 683,680 + +0.0 683,681 - +0.6 683,684 - -1.3 683,695 + -1.0 683,696 - +0.6 683,696 - -0.4 683,722 - +0.0 683,732 - -1.0 683,734 - -0.1 683,751 + +1.8 683,751 + +1.7 683,751 + +1.4 683,758 + -0.8 683,758 + -1.5 683,758 + -0.3 683,758 + -0.3 683,761 - -0.5 683,781 + HMPREF1078_RS02815 0.11 -2.4 683,781 + HMPREF1078_RS02815 0.11 -0.7 683,781 + HMPREF1078_RS02815 0.11 +0.5 683,788 + HMPREF1078_RS02815 0.12 +0.7 683,788 + HMPREF1078_RS02815 0.12 +0.0 683,788 + HMPREF1078_RS02815 0.12 -0.5 683,788 + HMPREF1078_RS02815 0.12 -0.6 683,788 + HMPREF1078_RS02815 0.12 +0.7 683,789 - HMPREF1078_RS02815 0.13 +1.3 683,789 - HMPREF1078_RS02815 0.13 +0.7 683,792 + HMPREF1078_RS02815 0.13 -0.3 683,792 + HMPREF1078_RS02815 0.13 -0.5 683,792 + HMPREF1078_RS02815 0.13 -0.1 683,792 + HMPREF1078_RS02815 0.13 -0.4 683,792 + HMPREF1078_RS02815 0.13 -2.0 683,793 - HMPREF1078_RS02815 0.13 -1.7 683,793 - HMPREF1078_RS02815 0.13 -0.7 683,793 - HMPREF1078_RS02815 0.13 -2.8 683,793 - HMPREF1078_RS02815 0.13 -0.4 683,793 - HMPREF1078_RS02815 0.13 +1.4 683,793 - HMPREF1078_RS02815 0.13 +0.8 683,793 - HMPREF1078_RS02815 0.13 -0.6 683,794 + HMPREF1078_RS02815 0.14 -0.8 683,794 + HMPREF1078_RS02815 0.14 +0.6 683,823 + HMPREF1078_RS02815 0.20 -0.8 683,823 + HMPREF1078_RS02815 0.20 -2.0 683,824 - HMPREF1078_RS02815 0.20 -0.3 683,824 - HMPREF1078_RS02815 0.20 +0.4 683,836 - HMPREF1078_RS02815 0.23 +0.7 683,858 + HMPREF1078_RS02815 0.27 -0.4 683,858 + HMPREF1078_RS02815 0.27 +1.5 683,869 - HMPREF1078_RS02815 0.30 -2.7 683,874 - HMPREF1078_RS02815 0.31 -0.6 683,874 - HMPREF1078_RS02815 0.31 -0.8 683,882 + HMPREF1078_RS02815 0.32 -0.2 683,883 - HMPREF1078_RS02815 0.33 -1.1 683,884 + HMPREF1078_RS02815 0.33 +1.9 683,928 - HMPREF1078_RS02815 0.42 +0.5 683,928 - HMPREF1078_RS02815 0.42 -1.0 683,928 - HMPREF1078_RS02815 0.42 +1.1 683,959 - HMPREF1078_RS02815 0.49 -0.9 683,959 - HMPREF1078_RS02815 0.49 +0.5 683,959 - HMPREF1078_RS02815 0.49 +0.3 683,983 - HMPREF1078_RS02815 0.54 -0.8 683,983 - HMPREF1078_RS02815 0.54 -0.2 683,983 - HMPREF1078_RS02815 0.54 -0.7 683,983 - HMPREF1078_RS02815 0.54 +0.4 683,987 + HMPREF1078_RS02815 0.55 -1.1 683,988 - HMPREF1078_RS02815 0.55 +1.0 683,988 - HMPREF1078_RS02815 0.55 +0.2 683,996 - HMPREF1078_RS02815 0.57 -1.0 684,031 + HMPREF1078_RS02815 0.64 -1.7 684,031 + HMPREF1078_RS02815 0.64 -1.3 684,031 + HMPREF1078_RS02815 0.64 +0.6 684,032 - HMPREF1078_RS02815 0.65 -0.3 684,032 - HMPREF1078_RS02815 0.65 -0.8 684,032 - HMPREF1078_RS02815 0.65 -0.0 684,032 - HMPREF1078_RS02815 0.65 +1.5 684,055 + HMPREF1078_RS02815 0.69 -1.1 684,064 - HMPREF1078_RS02815 0.71 -2.2 684,092 - HMPREF1078_RS02815 0.77 -1.5 684,092 - HMPREF1078_RS02815 0.77 +0.2
Or see this region's nucleotide sequence