Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02455 and HMPREF1078_RS02460 are separated by 285 nucleotides HMPREF1078_RS02460 and HMPREF1078_RS02465 are separated by 16 nucleotides HMPREF1078_RS02465 and HMPREF1078_RS02470 are separated by 0 nucleotides
HMPREF1078_RS02455: HMPREF1078_RS02455 - ATP phosphoribosyltransferase, at 602,553 to 603,404
_RS02455
HMPREF1078_RS02460: HMPREF1078_RS02460 - M1 family aminopeptidase, at 603,690 to 606,236
_RS02460
HMPREF1078_RS02465: HMPREF1078_RS02465 - DUF4268 domain-containing protein, at 606,253 to 606,708
_RS02465
HMPREF1078_RS02470: HMPREF1078_RS02470 - insulinase family protein, at 606,709 to 609,573
_RS02470
Position (kb) 603
604
605
606
607 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 602.724 kb on + strand, within HMPREF1078_RS02455 at 602.724 kb on + strand, within HMPREF1078_RS02455 at 602.724 kb on + strand, within HMPREF1078_RS02455 at 602.763 kb on + strand, within HMPREF1078_RS02455 at 602.763 kb on + strand, within HMPREF1078_RS02455 at 602.763 kb on + strand, within HMPREF1078_RS02455 at 602.764 kb on - strand, within HMPREF1078_RS02455 at 602.767 kb on + strand, within HMPREF1078_RS02455 at 602.767 kb on + strand, within HMPREF1078_RS02455 at 602.767 kb on + strand, within HMPREF1078_RS02455 at 602.767 kb on + strand, within HMPREF1078_RS02455 at 602.767 kb on - strand, within HMPREF1078_RS02455 at 602.768 kb on - strand, within HMPREF1078_RS02455 at 602.768 kb on - strand, within HMPREF1078_RS02455 at 602.768 kb on - strand, within HMPREF1078_RS02455 at 602.855 kb on + strand, within HMPREF1078_RS02455 at 603.034 kb on + strand, within HMPREF1078_RS02455 at 603.035 kb on - strand, within HMPREF1078_RS02455 at 603.035 kb on - strand, within HMPREF1078_RS02455 at 603.190 kb on + strand, within HMPREF1078_RS02455 at 603.190 kb on + strand, within HMPREF1078_RS02455 at 603.210 kb on - strand, within HMPREF1078_RS02455 at 603.213 kb on + strand, within HMPREF1078_RS02455 at 603.214 kb on - strand, within HMPREF1078_RS02455 at 603.248 kb on + strand, within HMPREF1078_RS02455 at 603.268 kb on - strand, within HMPREF1078_RS02455 at 603.268 kb on - strand, within HMPREF1078_RS02455 at 603.308 kb on + strand, within HMPREF1078_RS02455 at 603.325 kb on - strand at 603.399 kb on + strand at 603.399 kb on + strand at 603.408 kb on + strand at 603.420 kb on - strand at 603.420 kb on - strand at 603.443 kb on - strand at 603.469 kb on - strand at 603.476 kb on + strand at 603.477 kb on - strand at 603.479 kb on - strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.491 kb on + strand at 603.491 kb on + strand at 603.492 kb on - strand at 603.492 kb on - strand at 603.495 kb on + strand at 603.495 kb on + strand at 603.495 kb on + strand at 603.495 kb on + strand at 603.495 kb on + strand at 603.496 kb on - strand at 603.528 kb on - strand at 603.528 kb on - strand at 603.558 kb on + strand at 603.659 kb on + strand at 603.698 kb on - strand at 603.698 kb on - strand at 603.726 kb on - strand at 603.801 kb on - strand at 603.801 kb on - strand at 603.893 kb on + strand at 604.154 kb on + strand, within HMPREF1078_RS02460 at 604.155 kb on - strand, within HMPREF1078_RS02460 at 604.155 kb on - strand, within HMPREF1078_RS02460 at 604.155 kb on - strand, within HMPREF1078_RS02460 at 604.213 kb on + strand, within HMPREF1078_RS02460 at 604.216 kb on - strand, within HMPREF1078_RS02460 at 604.370 kb on + strand, within HMPREF1078_RS02460 at 604.370 kb on + strand, within HMPREF1078_RS02460 at 604.371 kb on - strand, within HMPREF1078_RS02460 at 604.372 kb on + strand, within HMPREF1078_RS02460 at 604.372 kb on + strand, within HMPREF1078_RS02460 at 604.373 kb on - strand, within HMPREF1078_RS02460 at 604.420 kb on + strand, within HMPREF1078_RS02460 at 604.440 kb on - strand, within HMPREF1078_RS02460 at 604.488 kb on - strand, within HMPREF1078_RS02460 at 604.520 kb on + strand, within HMPREF1078_RS02460 at 604.520 kb on + strand, within HMPREF1078_RS02460 at 604.520 kb on + strand, within HMPREF1078_RS02460 at 604.521 kb on - strand, within HMPREF1078_RS02460 at 604.583 kb on - strand, within HMPREF1078_RS02460 at 604.812 kb on + strand, within HMPREF1078_RS02460 at 604.813 kb on - strand, within HMPREF1078_RS02460 at 604.874 kb on + strand, within HMPREF1078_RS02460 at 604.875 kb on - strand, within HMPREF1078_RS02460 at 604.875 kb on - strand, within HMPREF1078_RS02460 at 604.875 kb on - strand, within HMPREF1078_RS02460 at 604.876 kb on + strand, within HMPREF1078_RS02460 at 604.910 kb on + strand, within HMPREF1078_RS02460 at 604.911 kb on - strand, within HMPREF1078_RS02460 at 604.911 kb on - strand, within HMPREF1078_RS02460 at 604.928 kb on - strand, within HMPREF1078_RS02460 at 604.928 kb on - strand, within HMPREF1078_RS02460 at 604.928 kb on - strand, within HMPREF1078_RS02460 at 605.017 kb on + strand, within HMPREF1078_RS02460 at 605.019 kb on + strand, within HMPREF1078_RS02460 at 605.025 kb on - strand, within HMPREF1078_RS02460 at 605.025 kb on - strand, within HMPREF1078_RS02460 at 605.027 kb on + strand, within HMPREF1078_RS02460 at 605.032 kb on + strand, within HMPREF1078_RS02460 at 605.032 kb on + strand, within HMPREF1078_RS02460 at 605.032 kb on + strand, within HMPREF1078_RS02460 at 605.032 kb on + strand, within HMPREF1078_RS02460 at 605.033 kb on - strand, within HMPREF1078_RS02460 at 605.033 kb on - strand, within HMPREF1078_RS02460 at 605.120 kb on + strand, within HMPREF1078_RS02460 at 605.176 kb on - strand, within HMPREF1078_RS02460 at 605.191 kb on + strand, within HMPREF1078_RS02460 at 605.192 kb on - strand, within HMPREF1078_RS02460 at 605.261 kb on + strand, within HMPREF1078_RS02460 at 605.261 kb on + strand, within HMPREF1078_RS02460 at 605.261 kb on + strand, within HMPREF1078_RS02460 at 605.348 kb on + strand, within HMPREF1078_RS02460 at 605.349 kb on - strand, within HMPREF1078_RS02460 at 605.349 kb on - strand, within HMPREF1078_RS02460 at 605.351 kb on - strand, within HMPREF1078_RS02460 at 605.353 kb on - strand, within HMPREF1078_RS02460 at 605.367 kb on - strand, within HMPREF1078_RS02460 at 605.413 kb on + strand, within HMPREF1078_RS02460 at 605.414 kb on - strand, within HMPREF1078_RS02460 at 605.428 kb on + strand, within HMPREF1078_RS02460 at 605.433 kb on + strand, within HMPREF1078_RS02460 at 605.433 kb on + strand, within HMPREF1078_RS02460 at 605.433 kb on + strand, within HMPREF1078_RS02460 at 605.433 kb on + strand, within HMPREF1078_RS02460 at 605.433 kb on + strand, within HMPREF1078_RS02460 at 605.434 kb on - strand, within HMPREF1078_RS02460 at 605.434 kb on - strand, within HMPREF1078_RS02460 at 605.434 kb on - strand, within HMPREF1078_RS02460 at 605.441 kb on + strand, within HMPREF1078_RS02460 at 605.442 kb on - strand, within HMPREF1078_RS02460 at 605.442 kb on - strand, within HMPREF1078_RS02460 at 605.444 kb on - strand, within HMPREF1078_RS02460 at 605.602 kb on + strand, within HMPREF1078_RS02460 at 605.802 kb on - strand, within HMPREF1078_RS02460 at 605.803 kb on + strand, within HMPREF1078_RS02460 at 605.804 kb on - strand, within HMPREF1078_RS02460 at 605.904 kb on - strand, within HMPREF1078_RS02460 at 605.921 kb on + strand, within HMPREF1078_RS02460 at 605.921 kb on + strand, within HMPREF1078_RS02460 at 605.921 kb on + strand, within HMPREF1078_RS02460 at 605.922 kb on - strand, within HMPREF1078_RS02460 at 605.922 kb on - strand, within HMPREF1078_RS02460 at 605.922 kb on - strand, within HMPREF1078_RS02460 at 605.923 kb on + strand, within HMPREF1078_RS02460 at 605.924 kb on - strand, within HMPREF1078_RS02460 at 605.935 kb on + strand, within HMPREF1078_RS02460 at 605.958 kb on + strand, within HMPREF1078_RS02460 at 605.958 kb on + strand, within HMPREF1078_RS02460 at 605.959 kb on - strand, within HMPREF1078_RS02460 at 605.985 kb on + strand at 606.012 kb on - strand at 606.022 kb on - strand at 606.164 kb on + strand at 606.165 kb on - strand at 606.165 kb on - strand at 606.165 kb on - strand at 606.187 kb on - strand at 606.194 kb on + strand at 606.195 kb on - strand at 606.195 kb on - strand at 606.208 kb on - strand at 606.208 kb on - strand at 606.275 kb on - strand at 606.303 kb on - strand, within HMPREF1078_RS02465 at 606.318 kb on + strand, within HMPREF1078_RS02465 at 606.380 kb on + strand, within HMPREF1078_RS02465 at 606.449 kb on + strand, within HMPREF1078_RS02465 at 606.463 kb on - strand, within HMPREF1078_RS02465 at 606.468 kb on + strand, within HMPREF1078_RS02465 at 606.469 kb on - strand, within HMPREF1078_RS02465 at 606.469 kb on - strand, within HMPREF1078_RS02465 at 606.469 kb on - strand, within HMPREF1078_RS02465 at 606.471 kb on - strand, within HMPREF1078_RS02465 at 606.471 kb on - strand, within HMPREF1078_RS02465 at 606.517 kb on - strand, within HMPREF1078_RS02465 at 606.597 kb on - strand, within HMPREF1078_RS02465 at 606.598 kb on + strand, within HMPREF1078_RS02465 at 606.598 kb on + strand, within HMPREF1078_RS02465 at 606.629 kb on + strand, within HMPREF1078_RS02465 at 606.637 kb on + strand, within HMPREF1078_RS02465 at 606.702 kb on + strand at 606.704 kb on + strand at 606.705 kb on - strand at 606.705 kb on - strand at 606.714 kb on + strand at 606.716 kb on + strand at 606.717 kb on - strand at 606.717 kb on - strand at 606.717 kb on - strand at 606.718 kb on + strand at 606.718 kb on + strand at 606.718 kb on + strand at 606.718 kb on + strand at 606.719 kb on - strand at 606.719 kb on - strand at 606.739 kb on + strand at 606.740 kb on - strand at 606.742 kb on + strand at 606.743 kb on - strand at 606.747 kb on + strand at 606.778 kb on - strand at 606.778 kb on - strand at 606.796 kb on - strand at 606.804 kb on - strand at 606.850 kb on - strand at 606.850 kb on - strand at 606.975 kb on + strand at 607.101 kb on + strand, within HMPREF1078_RS02470 at 607.187 kb on - strand, within HMPREF1078_RS02470 at 607.187 kb on - strand, within HMPREF1078_RS02470 at 607.212 kb on + strand, within HMPREF1078_RS02470 at 607.212 kb on + strand, within HMPREF1078_RS02470
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 602,724 + HMPREF1078_RS02455 0.20 -1.9 602,724 + HMPREF1078_RS02455 0.20 -2.6 602,724 + HMPREF1078_RS02455 0.20 -1.1 602,763 + HMPREF1078_RS02455 0.25 -0.2 602,763 + HMPREF1078_RS02455 0.25 -2.5 602,763 + HMPREF1078_RS02455 0.25 -2.3 602,764 - HMPREF1078_RS02455 0.25 +0.9 602,767 + HMPREF1078_RS02455 0.25 -2.5 602,767 + HMPREF1078_RS02455 0.25 -1.3 602,767 + HMPREF1078_RS02455 0.25 -1.2 602,767 + HMPREF1078_RS02455 0.25 -2.2 602,767 - HMPREF1078_RS02455 0.25 +1.2 602,768 - HMPREF1078_RS02455 0.25 -1.1 602,768 - HMPREF1078_RS02455 0.25 +1.0 602,768 - HMPREF1078_RS02455 0.25 +1.9 602,855 + HMPREF1078_RS02455 0.35 -0.4 603,034 + HMPREF1078_RS02455 0.56 -1.2 603,035 - HMPREF1078_RS02455 0.57 -3.1 603,035 - HMPREF1078_RS02455 0.57 -4.1 603,190 + HMPREF1078_RS02455 0.75 -2.8 603,190 + HMPREF1078_RS02455 0.75 +1.2 603,210 - HMPREF1078_RS02455 0.77 -3.0 603,213 + HMPREF1078_RS02455 0.77 -1.9 603,214 - HMPREF1078_RS02455 0.78 -3.1 603,248 + HMPREF1078_RS02455 0.82 -1.7 603,268 - HMPREF1078_RS02455 0.84 -2.2 603,268 - HMPREF1078_RS02455 0.84 -3.8 603,308 + HMPREF1078_RS02455 0.89 -3.2 603,325 - -3.8 603,399 + -1.6 603,399 + -4.9 603,408 + -0.1 603,420 - -0.3 603,420 - +2.2 603,443 - -0.3 603,469 - -1.0 603,476 + -3.3 603,477 - -0.2 603,479 - -1.2 603,483 + -3.1 603,483 + -0.1 603,483 + -2.7 603,483 + -2.6 603,483 + -2.7 603,483 + -0.1 603,483 + -3.5 603,484 - -0.7 603,484 - -0.7 603,484 - -1.5 603,484 - -1.6 603,484 - +1.1 603,484 - +0.3 603,491 + -2.0 603,491 + -2.9 603,492 - -2.6 603,492 - +0.7 603,495 + -2.9 603,495 + -3.2 603,495 + -2.5 603,495 + -2.3 603,495 + -1.6 603,496 - +1.2 603,528 - -0.8 603,528 - -1.2 603,558 + -2.4 603,659 + +1.7 603,698 - -1.9 603,698 - +1.6 603,726 - -0.7 603,801 - -1.5 603,801 - -0.9 603,893 + +0.3 604,154 + HMPREF1078_RS02460 0.18 -0.1 604,155 - HMPREF1078_RS02460 0.18 +0.2 604,155 - HMPREF1078_RS02460 0.18 -0.5 604,155 - HMPREF1078_RS02460 0.18 +0.2 604,213 + HMPREF1078_RS02460 0.21 -0.1 604,216 - HMPREF1078_RS02460 0.21 +0.7 604,370 + HMPREF1078_RS02460 0.27 -0.2 604,370 + HMPREF1078_RS02460 0.27 -1.5 604,371 - HMPREF1078_RS02460 0.27 +0.1 604,372 + HMPREF1078_RS02460 0.27 -0.9 604,372 + HMPREF1078_RS02460 0.27 -1.1 604,373 - HMPREF1078_RS02460 0.27 +0.3 604,420 + HMPREF1078_RS02460 0.29 +0.8 604,440 - HMPREF1078_RS02460 0.29 -1.0 604,488 - HMPREF1078_RS02460 0.31 -2.6 604,520 + HMPREF1078_RS02460 0.33 -0.7 604,520 + HMPREF1078_RS02460 0.33 +2.8 604,520 + HMPREF1078_RS02460 0.33 +0.4 604,521 - HMPREF1078_RS02460 0.33 -0.2 604,583 - HMPREF1078_RS02460 0.35 -0.3 604,812 + HMPREF1078_RS02460 0.44 -0.9 604,813 - HMPREF1078_RS02460 0.44 +0.9 604,874 + HMPREF1078_RS02460 0.46 -0.8 604,875 - HMPREF1078_RS02460 0.47 +0.1 604,875 - HMPREF1078_RS02460 0.47 -0.4 604,875 - HMPREF1078_RS02460 0.47 +0.1 604,876 + HMPREF1078_RS02460 0.47 -0.3 604,910 + HMPREF1078_RS02460 0.48 -2.2 604,911 - HMPREF1078_RS02460 0.48 -0.3 604,911 - HMPREF1078_RS02460 0.48 -0.7 604,928 - HMPREF1078_RS02460 0.49 -0.7 604,928 - HMPREF1078_RS02460 0.49 -2.9 604,928 - HMPREF1078_RS02460 0.49 -0.7 605,017 + HMPREF1078_RS02460 0.52 -0.8 605,019 + HMPREF1078_RS02460 0.52 +1.2 605,025 - HMPREF1078_RS02460 0.52 -0.4 605,025 - HMPREF1078_RS02460 0.52 +0.2 605,027 + HMPREF1078_RS02460 0.52 +1.5 605,032 + HMPREF1078_RS02460 0.53 +0.1 605,032 + HMPREF1078_RS02460 0.53 -0.7 605,032 + HMPREF1078_RS02460 0.53 -1.0 605,032 + HMPREF1078_RS02460 0.53 -0.6 605,033 - HMPREF1078_RS02460 0.53 -1.2 605,033 - HMPREF1078_RS02460 0.53 +0.9 605,120 + HMPREF1078_RS02460 0.56 +0.4 605,176 - HMPREF1078_RS02460 0.58 -0.4 605,191 + HMPREF1078_RS02460 0.59 -0.2 605,192 - HMPREF1078_RS02460 0.59 +0.1 605,261 + HMPREF1078_RS02460 0.62 +0.3 605,261 + HMPREF1078_RS02460 0.62 +0.5 605,261 + HMPREF1078_RS02460 0.62 -4.3 605,348 + HMPREF1078_RS02460 0.65 -2.6 605,349 - HMPREF1078_RS02460 0.65 -0.7 605,349 - HMPREF1078_RS02460 0.65 -1.2 605,351 - HMPREF1078_RS02460 0.65 -0.1 605,353 - HMPREF1078_RS02460 0.65 -0.3 605,367 - HMPREF1078_RS02460 0.66 -0.2 605,413 + HMPREF1078_RS02460 0.68 +0.5 605,414 - HMPREF1078_RS02460 0.68 -1.8 605,428 + HMPREF1078_RS02460 0.68 -0.9 605,433 + HMPREF1078_RS02460 0.68 -2.2 605,433 + HMPREF1078_RS02460 0.68 -2.2 605,433 + HMPREF1078_RS02460 0.68 -1.5 605,433 + HMPREF1078_RS02460 0.68 +0.5 605,433 + HMPREF1078_RS02460 0.68 +1.9 605,434 - HMPREF1078_RS02460 0.68 -0.3 605,434 - HMPREF1078_RS02460 0.68 -1.9 605,434 - HMPREF1078_RS02460 0.68 +0.1 605,441 + HMPREF1078_RS02460 0.69 +0.9 605,442 - HMPREF1078_RS02460 0.69 -0.2 605,442 - HMPREF1078_RS02460 0.69 +0.4 605,444 - HMPREF1078_RS02460 0.69 -0.9 605,602 + HMPREF1078_RS02460 0.75 -0.8 605,802 - HMPREF1078_RS02460 0.83 +0.9 605,803 + HMPREF1078_RS02460 0.83 -1.0 605,804 - HMPREF1078_RS02460 0.83 -1.1 605,904 - HMPREF1078_RS02460 0.87 -0.3 605,921 + HMPREF1078_RS02460 0.88 -2.1 605,921 + HMPREF1078_RS02460 0.88 -2.6 605,921 + HMPREF1078_RS02460 0.88 -0.0 605,922 - HMPREF1078_RS02460 0.88 +0.7 605,922 - HMPREF1078_RS02460 0.88 +1.0 605,922 - HMPREF1078_RS02460 0.88 +1.2 605,923 + HMPREF1078_RS02460 0.88 -0.8 605,924 - HMPREF1078_RS02460 0.88 -2.4 605,935 + HMPREF1078_RS02460 0.88 +0.8 605,958 + HMPREF1078_RS02460 0.89 +0.2 605,958 + HMPREF1078_RS02460 0.89 -0.6 605,959 - HMPREF1078_RS02460 0.89 -1.0 605,985 + +2.2 606,012 - -1.7 606,022 - -0.8 606,164 + +0.5 606,165 - -2.0 606,165 - -0.2 606,165 - -0.1 606,187 - +0.4 606,194 + -0.3 606,195 - +0.5 606,195 - -0.7 606,208 - +0.5 606,208 - +0.5 606,275 - +0.5 606,303 - HMPREF1078_RS02465 0.11 +0.1 606,318 + HMPREF1078_RS02465 0.14 +0.2 606,380 + HMPREF1078_RS02465 0.28 -0.8 606,449 + HMPREF1078_RS02465 0.43 +0.2 606,463 - HMPREF1078_RS02465 0.46 -0.1 606,468 + HMPREF1078_RS02465 0.47 -3.3 606,469 - HMPREF1078_RS02465 0.47 +0.1 606,469 - HMPREF1078_RS02465 0.47 +1.6 606,469 - HMPREF1078_RS02465 0.47 -0.1 606,471 - HMPREF1078_RS02465 0.48 -0.3 606,471 - HMPREF1078_RS02465 0.48 +1.0 606,517 - HMPREF1078_RS02465 0.58 +0.2 606,597 - HMPREF1078_RS02465 0.75 -0.8 606,598 + HMPREF1078_RS02465 0.76 -0.6 606,598 + HMPREF1078_RS02465 0.76 +1.4 606,629 + HMPREF1078_RS02465 0.82 +1.6 606,637 + HMPREF1078_RS02465 0.84 -2.5 606,702 + -1.1 606,704 + +0.8 606,705 - -0.0 606,705 - +0.2 606,714 + -0.9 606,716 + -0.6 606,717 - -1.0 606,717 - -1.6 606,717 - -0.2 606,718 + +0.4 606,718 + +0.9 606,718 + +0.2 606,718 + -0.7 606,719 - +2.2 606,719 - -2.0 606,739 + +2.6 606,740 - -0.9 606,742 + +0.4 606,743 - -0.4 606,747 + +0.3 606,778 - -0.6 606,778 - +0.4 606,796 - -0.8 606,804 - +0.5 606,850 - -2.5 606,850 - +0.8 606,975 + -1.7 607,101 + HMPREF1078_RS02470 0.14 -0.2 607,187 - HMPREF1078_RS02470 0.17 -1.4 607,187 - HMPREF1078_RS02470 0.17 +0.0 607,212 + HMPREF1078_RS02470 0.18 +0.2 607,212 + HMPREF1078_RS02470 0.18 -4.0
Or see this region's nucleotide sequence