Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02130 and HMPREF1078_RS02135 are separated by 200 nucleotides HMPREF1078_RS02135 and HMPREF1078_RS02140 are separated by 145 nucleotides
HMPREF1078_RS02130: HMPREF1078_RS02130 - hybrid sensor histidine kinase/response regulator, at 528,003 to 529,121
_RS02130
HMPREF1078_RS02135: HMPREF1078_RS02135 - alpha-L-arabinofuranosidase C-terminal domain-containing protein, at 529,322 to 531,772
_RS02135
HMPREF1078_RS02140: HMPREF1078_RS02140 - family 20 glycosylhydrolase, at 531,918 to 534,266
_RS02140
Position (kb) 529
530
531
532 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 528.326 kb on + strand, within HMPREF1078_RS02130 at 528.338 kb on + strand, within HMPREF1078_RS02130 at 528.369 kb on - strand, within HMPREF1078_RS02130 at 528.393 kb on + strand, within HMPREF1078_RS02130 at 528.394 kb on - strand, within HMPREF1078_RS02130 at 528.424 kb on - strand, within HMPREF1078_RS02130 at 528.445 kb on - strand, within HMPREF1078_RS02130 at 528.473 kb on - strand, within HMPREF1078_RS02130 at 528.574 kb on + strand, within HMPREF1078_RS02130 at 528.576 kb on + strand, within HMPREF1078_RS02130 at 528.576 kb on + strand, within HMPREF1078_RS02130 at 528.576 kb on + strand, within HMPREF1078_RS02130 at 528.576 kb on + strand, within HMPREF1078_RS02130 at 528.577 kb on - strand, within HMPREF1078_RS02130 at 528.658 kb on - strand, within HMPREF1078_RS02130 at 528.658 kb on - strand, within HMPREF1078_RS02130 at 528.725 kb on + strand, within HMPREF1078_RS02130 at 528.726 kb on - strand, within HMPREF1078_RS02130 at 528.798 kb on - strand, within HMPREF1078_RS02130 at 528.802 kb on + strand, within HMPREF1078_RS02130 at 528.803 kb on - strand, within HMPREF1078_RS02130 at 528.803 kb on - strand, within HMPREF1078_RS02130 at 528.836 kb on + strand, within HMPREF1078_RS02130 at 528.867 kb on - strand, within HMPREF1078_RS02130 at 528.945 kb on - strand, within HMPREF1078_RS02130 at 528.945 kb on - strand, within HMPREF1078_RS02130 at 528.991 kb on - strand, within HMPREF1078_RS02130 at 528.999 kb on - strand, within HMPREF1078_RS02130 at 528.999 kb on - strand, within HMPREF1078_RS02130 at 529.020 kb on + strand at 529.021 kb on - strand at 529.026 kb on - strand at 529.027 kb on + strand at 529.068 kb on - strand at 529.092 kb on + strand at 529.093 kb on - strand at 529.095 kb on + strand at 529.097 kb on + strand at 529.098 kb on - strand at 529.098 kb on - strand at 529.098 kb on - strand at 529.099 kb on + strand at 529.100 kb on - strand at 529.155 kb on - strand at 529.190 kb on - strand at 529.241 kb on + strand at 529.247 kb on - strand at 529.260 kb on + strand at 529.304 kb on - strand at 529.310 kb on + strand at 529.353 kb on + strand at 529.354 kb on - strand at 529.354 kb on - strand at 529.393 kb on + strand at 529.440 kb on + strand at 529.440 kb on + strand at 529.441 kb on - strand at 529.441 kb on - strand at 529.442 kb on + strand at 529.443 kb on - strand at 529.486 kb on + strand at 529.487 kb on - strand at 529.652 kb on + strand, within HMPREF1078_RS02135 at 529.653 kb on - strand, within HMPREF1078_RS02135 at 529.654 kb on + strand, within HMPREF1078_RS02135 at 529.654 kb on + strand, within HMPREF1078_RS02135 at 529.654 kb on + strand, within HMPREF1078_RS02135 at 529.655 kb on - strand, within HMPREF1078_RS02135 at 529.655 kb on - strand, within HMPREF1078_RS02135 at 529.655 kb on - strand, within HMPREF1078_RS02135 at 529.655 kb on - strand, within HMPREF1078_RS02135 at 529.655 kb on - strand, within HMPREF1078_RS02135 at 529.655 kb on - strand, within HMPREF1078_RS02135 at 529.655 kb on - strand, within HMPREF1078_RS02135 at 529.659 kb on - strand, within HMPREF1078_RS02135 at 529.659 kb on - strand, within HMPREF1078_RS02135 at 529.659 kb on - strand, within HMPREF1078_RS02135 at 529.681 kb on + strand, within HMPREF1078_RS02135 at 529.764 kb on - strand, within HMPREF1078_RS02135 at 529.764 kb on - strand, within HMPREF1078_RS02135 at 529.774 kb on - strand, within HMPREF1078_RS02135 at 529.796 kb on + strand, within HMPREF1078_RS02135 at 529.796 kb on + strand, within HMPREF1078_RS02135 at 529.797 kb on - strand, within HMPREF1078_RS02135 at 529.814 kb on - strand, within HMPREF1078_RS02135 at 529.846 kb on - strand, within HMPREF1078_RS02135 at 530.065 kb on - strand, within HMPREF1078_RS02135 at 530.136 kb on + strand, within HMPREF1078_RS02135 at 530.146 kb on + strand, within HMPREF1078_RS02135 at 530.182 kb on - strand, within HMPREF1078_RS02135 at 530.225 kb on + strand, within HMPREF1078_RS02135 at 530.226 kb on - strand, within HMPREF1078_RS02135 at 530.258 kb on + strand, within HMPREF1078_RS02135 at 530.259 kb on - strand, within HMPREF1078_RS02135 at 530.297 kb on + strand, within HMPREF1078_RS02135 at 530.298 kb on - strand, within HMPREF1078_RS02135 at 530.373 kb on + strand, within HMPREF1078_RS02135 at 530.373 kb on + strand, within HMPREF1078_RS02135 at 530.443 kb on + strand, within HMPREF1078_RS02135 at 530.444 kb on - strand, within HMPREF1078_RS02135 at 530.477 kb on + strand, within HMPREF1078_RS02135 at 530.515 kb on + strand, within HMPREF1078_RS02135 at 530.516 kb on - strand, within HMPREF1078_RS02135 at 530.592 kb on + strand, within HMPREF1078_RS02135 at 530.687 kb on + strand, within HMPREF1078_RS02135 at 530.688 kb on - strand, within HMPREF1078_RS02135 at 530.689 kb on + strand, within HMPREF1078_RS02135 at 530.690 kb on - strand, within HMPREF1078_RS02135 at 530.831 kb on + strand, within HMPREF1078_RS02135 at 530.831 kb on + strand, within HMPREF1078_RS02135 at 530.832 kb on - strand, within HMPREF1078_RS02135 at 530.859 kb on - strand, within HMPREF1078_RS02135 at 530.865 kb on + strand, within HMPREF1078_RS02135 at 530.924 kb on + strand, within HMPREF1078_RS02135 at 530.925 kb on - strand, within HMPREF1078_RS02135 at 530.925 kb on - strand, within HMPREF1078_RS02135 at 531.127 kb on + strand, within HMPREF1078_RS02135 at 531.127 kb on + strand, within HMPREF1078_RS02135 at 531.168 kb on + strand, within HMPREF1078_RS02135 at 531.185 kb on + strand, within HMPREF1078_RS02135 at 531.185 kb on + strand, within HMPREF1078_RS02135 at 531.186 kb on - strand, within HMPREF1078_RS02135 at 531.192 kb on - strand, within HMPREF1078_RS02135 at 531.193 kb on + strand, within HMPREF1078_RS02135 at 531.194 kb on - strand, within HMPREF1078_RS02135 at 531.276 kb on + strand, within HMPREF1078_RS02135 at 531.284 kb on + strand, within HMPREF1078_RS02135 at 531.316 kb on - strand, within HMPREF1078_RS02135 at 531.354 kb on + strand, within HMPREF1078_RS02135 at 531.355 kb on - strand, within HMPREF1078_RS02135 at 531.358 kb on + strand, within HMPREF1078_RS02135 at 531.359 kb on - strand, within HMPREF1078_RS02135 at 531.496 kb on + strand, within HMPREF1078_RS02135 at 531.524 kb on - strand, within HMPREF1078_RS02135 at 531.524 kb on - strand, within HMPREF1078_RS02135 at 531.524 kb on - strand, within HMPREF1078_RS02135 at 531.531 kb on + strand at 531.531 kb on + strand at 531.547 kb on + strand at 531.653 kb on + strand at 531.654 kb on - strand at 531.693 kb on + strand at 531.693 kb on + strand at 531.746 kb on - strand at 531.863 kb on + strand at 531.920 kb on - strand at 531.928 kb on - strand at 532.022 kb on + strand at 532.022 kb on + strand at 532.022 kb on + strand at 532.022 kb on + strand at 532.022 kb on + strand at 532.022 kb on + strand at 532.023 kb on - strand at 532.023 kb on - strand at 532.023 kb on - strand at 532.023 kb on - strand at 532.023 kb on - strand at 532.023 kb on - strand at 532.036 kb on - strand at 532.036 kb on - strand at 532.123 kb on - strand at 532.144 kb on - strand at 532.144 kb on - strand at 532.198 kb on + strand, within HMPREF1078_RS02140 at 532.199 kb on - strand, within HMPREF1078_RS02140 at 532.199 kb on - strand, within HMPREF1078_RS02140 at 532.219 kb on + strand, within HMPREF1078_RS02140 at 532.219 kb on + strand, within HMPREF1078_RS02140 at 532.220 kb on - strand, within HMPREF1078_RS02140 at 532.238 kb on + strand, within HMPREF1078_RS02140 at 532.427 kb on + strand, within HMPREF1078_RS02140 at 532.436 kb on + strand, within HMPREF1078_RS02140 at 532.436 kb on + strand, within HMPREF1078_RS02140 at 532.550 kb on + strand, within HMPREF1078_RS02140 at 532.550 kb on + strand, within HMPREF1078_RS02140 at 532.551 kb on - strand, within HMPREF1078_RS02140 at 532.552 kb on + strand, within HMPREF1078_RS02140 at 532.653 kb on - strand, within HMPREF1078_RS02140 at 532.657 kb on + strand, within HMPREF1078_RS02140 at 532.658 kb on - strand, within HMPREF1078_RS02140 at 532.720 kb on + strand, within HMPREF1078_RS02140 at 532.721 kb on - strand, within HMPREF1078_RS02140
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 528,326 + HMPREF1078_RS02130 0.29 -1.7 528,338 + HMPREF1078_RS02130 0.30 -3.3 528,369 - HMPREF1078_RS02130 0.33 -2.1 528,393 + HMPREF1078_RS02130 0.35 -0.4 528,394 - HMPREF1078_RS02130 0.35 -2.0 528,424 - HMPREF1078_RS02130 0.38 -0.8 528,445 - HMPREF1078_RS02130 0.39 -0.2 528,473 - HMPREF1078_RS02130 0.42 -1.5 528,574 + HMPREF1078_RS02130 0.51 -2.6 528,576 + HMPREF1078_RS02130 0.51 -0.8 528,576 + HMPREF1078_RS02130 0.51 -0.5 528,576 + HMPREF1078_RS02130 0.51 +1.8 528,576 + HMPREF1078_RS02130 0.51 -1.2 528,577 - HMPREF1078_RS02130 0.51 -0.2 528,658 - HMPREF1078_RS02130 0.59 -1.6 528,658 - HMPREF1078_RS02130 0.59 -1.4 528,725 + HMPREF1078_RS02130 0.65 -1.8 528,726 - HMPREF1078_RS02130 0.65 -1.3 528,798 - HMPREF1078_RS02130 0.71 -0.8 528,802 + HMPREF1078_RS02130 0.71 -0.7 528,803 - HMPREF1078_RS02130 0.71 -0.9 528,803 - HMPREF1078_RS02130 0.71 -0.2 528,836 + HMPREF1078_RS02130 0.74 -0.8 528,867 - HMPREF1078_RS02130 0.77 -1.5 528,945 - HMPREF1078_RS02130 0.84 -0.9 528,945 - HMPREF1078_RS02130 0.84 -1.1 528,991 - HMPREF1078_RS02130 0.88 +0.6 528,999 - HMPREF1078_RS02130 0.89 -0.3 528,999 - HMPREF1078_RS02130 0.89 -0.7 529,020 + -1.7 529,021 - -0.2 529,026 - -1.5 529,027 + -0.0 529,068 - -1.3 529,092 + -1.9 529,093 - +0.5 529,095 + +2.0 529,097 + -0.7 529,098 - -0.3 529,098 - -1.4 529,098 - -0.9 529,099 + -0.0 529,100 - -1.9 529,155 - -0.3 529,190 - -0.7 529,241 + +1.3 529,247 - -0.8 529,260 + -0.3 529,304 - -0.9 529,310 + -0.3 529,353 + +0.2 529,354 - -0.4 529,354 - +0.7 529,393 + -2.1 529,440 + +1.4 529,440 + -0.9 529,441 - -3.0 529,441 - -1.2 529,442 + -2.8 529,443 - -2.3 529,486 + -0.4 529,487 - -3.0 529,652 + HMPREF1078_RS02135 0.13 -3.8 529,653 - HMPREF1078_RS02135 0.14 -1.1 529,654 + HMPREF1078_RS02135 0.14 -1.9 529,654 + HMPREF1078_RS02135 0.14 -3.0 529,654 + HMPREF1078_RS02135 0.14 +0.8 529,655 - HMPREF1078_RS02135 0.14 -1.3 529,655 - HMPREF1078_RS02135 0.14 -0.2 529,655 - HMPREF1078_RS02135 0.14 -0.9 529,655 - HMPREF1078_RS02135 0.14 -1.4 529,655 - HMPREF1078_RS02135 0.14 -1.8 529,655 - HMPREF1078_RS02135 0.14 -1.6 529,655 - HMPREF1078_RS02135 0.14 -3.5 529,659 - HMPREF1078_RS02135 0.14 -0.8 529,659 - HMPREF1078_RS02135 0.14 -1.7 529,659 - HMPREF1078_RS02135 0.14 -3.8 529,681 + HMPREF1078_RS02135 0.15 -0.4 529,764 - HMPREF1078_RS02135 0.18 -1.6 529,764 - HMPREF1078_RS02135 0.18 -3.6 529,774 - HMPREF1078_RS02135 0.18 -0.9 529,796 + HMPREF1078_RS02135 0.19 -3.6 529,796 + HMPREF1078_RS02135 0.19 -1.5 529,797 - HMPREF1078_RS02135 0.19 -0.5 529,814 - HMPREF1078_RS02135 0.20 -2.5 529,846 - HMPREF1078_RS02135 0.21 -2.1 530,065 - HMPREF1078_RS02135 0.30 -1.7 530,136 + HMPREF1078_RS02135 0.33 -2.7 530,146 + HMPREF1078_RS02135 0.34 -1.7 530,182 - HMPREF1078_RS02135 0.35 -1.5 530,225 + HMPREF1078_RS02135 0.37 +0.5 530,226 - HMPREF1078_RS02135 0.37 -0.7 530,258 + HMPREF1078_RS02135 0.38 -1.4 530,259 - HMPREF1078_RS02135 0.38 -2.5 530,297 + HMPREF1078_RS02135 0.40 -3.3 530,298 - HMPREF1078_RS02135 0.40 -2.9 530,373 + HMPREF1078_RS02135 0.43 -2.9 530,373 + HMPREF1078_RS02135 0.43 -1.3 530,443 + HMPREF1078_RS02135 0.46 -2.3 530,444 - HMPREF1078_RS02135 0.46 -2.9 530,477 + HMPREF1078_RS02135 0.47 -1.9 530,515 + HMPREF1078_RS02135 0.49 -2.9 530,516 - HMPREF1078_RS02135 0.49 -1.9 530,592 + HMPREF1078_RS02135 0.52 -1.8 530,687 + HMPREF1078_RS02135 0.56 -1.7 530,688 - HMPREF1078_RS02135 0.56 -1.1 530,689 + HMPREF1078_RS02135 0.56 -1.7 530,690 - HMPREF1078_RS02135 0.56 -0.7 530,831 + HMPREF1078_RS02135 0.62 -3.4 530,831 + HMPREF1078_RS02135 0.62 -1.6 530,832 - HMPREF1078_RS02135 0.62 -1.0 530,859 - HMPREF1078_RS02135 0.63 -1.4 530,865 + HMPREF1078_RS02135 0.63 -1.1 530,924 + HMPREF1078_RS02135 0.65 -1.1 530,925 - HMPREF1078_RS02135 0.65 -2.1 530,925 - HMPREF1078_RS02135 0.65 -1.9 531,127 + HMPREF1078_RS02135 0.74 -1.4 531,127 + HMPREF1078_RS02135 0.74 -1.9 531,168 + HMPREF1078_RS02135 0.75 -3.1 531,185 + HMPREF1078_RS02135 0.76 -2.4 531,185 + HMPREF1078_RS02135 0.76 -3.4 531,186 - HMPREF1078_RS02135 0.76 -0.3 531,192 - HMPREF1078_RS02135 0.76 -0.5 531,193 + HMPREF1078_RS02135 0.76 -1.3 531,194 - HMPREF1078_RS02135 0.76 +0.2 531,276 + HMPREF1078_RS02135 0.80 -3.2 531,284 + HMPREF1078_RS02135 0.80 -1.7 531,316 - HMPREF1078_RS02135 0.81 -1.9 531,354 + HMPREF1078_RS02135 0.83 -1.1 531,355 - HMPREF1078_RS02135 0.83 +0.1 531,358 + HMPREF1078_RS02135 0.83 -0.7 531,359 - HMPREF1078_RS02135 0.83 -0.3 531,496 + HMPREF1078_RS02135 0.89 +0.2 531,524 - HMPREF1078_RS02135 0.90 -1.6 531,524 - HMPREF1078_RS02135 0.90 -2.5 531,524 - HMPREF1078_RS02135 0.90 -1.5 531,531 + -0.9 531,531 + -1.1 531,547 + -1.5 531,653 + +0.6 531,654 - -2.3 531,693 + -2.9 531,693 + -0.4 531,746 - -1.8 531,863 + -1.8 531,920 - -0.2 531,928 - -1.5 532,022 + -0.3 532,022 + -0.5 532,022 + +0.3 532,022 + -0.3 532,022 + -0.2 532,022 + +0.1 532,023 - +0.3 532,023 - -1.2 532,023 - -1.3 532,023 - -0.3 532,023 - +0.8 532,023 - -0.6 532,036 - -1.3 532,036 - -0.2 532,123 - -0.5 532,144 - +0.1 532,144 - -1.0 532,198 + HMPREF1078_RS02140 0.12 -0.9 532,199 - HMPREF1078_RS02140 0.12 -0.5 532,199 - HMPREF1078_RS02140 0.12 -1.2 532,219 + HMPREF1078_RS02140 0.13 +0.1 532,219 + HMPREF1078_RS02140 0.13 +0.3 532,220 - HMPREF1078_RS02140 0.13 -1.4 532,238 + HMPREF1078_RS02140 0.14 -0.7 532,427 + HMPREF1078_RS02140 0.22 +0.7 532,436 + HMPREF1078_RS02140 0.22 -0.9 532,436 + HMPREF1078_RS02140 0.22 -0.1 532,550 + HMPREF1078_RS02140 0.27 -1.7 532,550 + HMPREF1078_RS02140 0.27 -0.1 532,551 - HMPREF1078_RS02140 0.27 +0.0 532,552 + HMPREF1078_RS02140 0.27 -0.4 532,653 - HMPREF1078_RS02140 0.31 +1.0 532,657 + HMPREF1078_RS02140 0.31 -0.6 532,658 - HMPREF1078_RS02140 0.32 +0.4 532,720 + HMPREF1078_RS02140 0.34 -1.6 532,721 - HMPREF1078_RS02140 0.34 -0.4
Or see this region's nucleotide sequence