Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01895 and HMPREF1078_RS01900 are separated by 79 nucleotides HMPREF1078_RS01900 and HMPREF1078_RS01905 are separated by 4 nucleotides HMPREF1078_RS01905 and HMPREF1078_RS01910 are separated by 172 nucleotides
HMPREF1078_RS01895: HMPREF1078_RS01895 - heavy metal translocating P-type ATPase, at 468,456 to 470,666
_RS01895
HMPREF1078_RS01900: HMPREF1078_RS01900 - hypothetical protein, at 470,746 to 470,952
_RS01900
HMPREF1078_RS01905: HMPREF1078_RS01905 - hemolysin III family protein, at 470,957 to 471,610
_RS01905
HMPREF1078_RS01910: HMPREF1078_RS01910 - DNA/RNA non-specific endonuclease, at 471,783 to 472,775
_RS01910
Position (kb) 470
471
472 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 469.997 kb on - strand, within HMPREF1078_RS01895 at 470.074 kb on - strand, within HMPREF1078_RS01895 at 470.092 kb on + strand, within HMPREF1078_RS01895 at 470.170 kb on + strand, within HMPREF1078_RS01895 at 470.170 kb on + strand, within HMPREF1078_RS01895 at 470.176 kb on + strand, within HMPREF1078_RS01895 at 470.176 kb on + strand, within HMPREF1078_RS01895 at 470.176 kb on + strand, within HMPREF1078_RS01895 at 470.176 kb on + strand, within HMPREF1078_RS01895 at 470.177 kb on - strand, within HMPREF1078_RS01895 at 470.177 kb on - strand, within HMPREF1078_RS01895 at 470.177 kb on - strand, within HMPREF1078_RS01895 at 470.177 kb on - strand, within HMPREF1078_RS01895 at 470.242 kb on - strand, within HMPREF1078_RS01895 at 470.244 kb on + strand, within HMPREF1078_RS01895 at 470.280 kb on + strand, within HMPREF1078_RS01895 at 470.280 kb on + strand, within HMPREF1078_RS01895 at 470.281 kb on - strand, within HMPREF1078_RS01895 at 470.288 kb on - strand, within HMPREF1078_RS01895 at 470.397 kb on - strand, within HMPREF1078_RS01895 at 470.520 kb on + strand at 470.527 kb on + strand at 470.632 kb on + strand at 470.632 kb on + strand at 470.639 kb on + strand at 470.718 kb on + strand at 470.724 kb on + strand at 470.724 kb on + strand at 470.725 kb on - strand at 470.745 kb on + strand at 470.745 kb on + strand at 470.801 kb on + strand, within HMPREF1078_RS01900 at 470.817 kb on + strand, within HMPREF1078_RS01900 at 470.817 kb on + strand, within HMPREF1078_RS01900 at 470.949 kb on - strand at 470.981 kb on + strand at 470.982 kb on - strand at 470.982 kb on - strand at 470.982 kb on - strand at 470.982 kb on - strand at 471.049 kb on + strand, within HMPREF1078_RS01905 at 471.110 kb on + strand, within HMPREF1078_RS01905 at 471.121 kb on + strand, within HMPREF1078_RS01905 at 471.121 kb on + strand, within HMPREF1078_RS01905 at 471.121 kb on + strand, within HMPREF1078_RS01905 at 471.122 kb on - strand, within HMPREF1078_RS01905 at 471.122 kb on - strand, within HMPREF1078_RS01905 at 471.134 kb on + strand, within HMPREF1078_RS01905 at 471.152 kb on + strand, within HMPREF1078_RS01905 at 471.153 kb on - strand, within HMPREF1078_RS01905 at 471.215 kb on + strand, within HMPREF1078_RS01905 at 471.223 kb on + strand, within HMPREF1078_RS01905 at 471.224 kb on - strand, within HMPREF1078_RS01905 at 471.236 kb on + strand, within HMPREF1078_RS01905 at 471.236 kb on + strand, within HMPREF1078_RS01905 at 471.247 kb on + strand, within HMPREF1078_RS01905 at 471.248 kb on - strand, within HMPREF1078_RS01905 at 471.303 kb on + strand, within HMPREF1078_RS01905 at 471.304 kb on - strand, within HMPREF1078_RS01905 at 471.405 kb on + strand, within HMPREF1078_RS01905 at 471.405 kb on + strand, within HMPREF1078_RS01905 at 471.405 kb on + strand, within HMPREF1078_RS01905 at 471.406 kb on - strand, within HMPREF1078_RS01905 at 471.406 kb on - strand, within HMPREF1078_RS01905 at 471.406 kb on - strand, within HMPREF1078_RS01905 at 471.460 kb on + strand, within HMPREF1078_RS01905 at 471.499 kb on - strand, within HMPREF1078_RS01905 at 471.499 kb on - strand, within HMPREF1078_RS01905 at 471.527 kb on + strand, within HMPREF1078_RS01905 at 471.530 kb on - strand, within HMPREF1078_RS01905 at 471.530 kb on - strand, within HMPREF1078_RS01905 at 471.530 kb on - strand, within HMPREF1078_RS01905 at 471.533 kb on + strand, within HMPREF1078_RS01905 at 471.533 kb on + strand, within HMPREF1078_RS01905 at 471.533 kb on + strand, within HMPREF1078_RS01905 at 471.533 kb on + strand, within HMPREF1078_RS01905 at 471.533 kb on + strand, within HMPREF1078_RS01905 at 471.533 kb on + strand, within HMPREF1078_RS01905 at 471.534 kb on - strand, within HMPREF1078_RS01905 at 471.534 kb on - strand, within HMPREF1078_RS01905 at 471.535 kb on + strand, within HMPREF1078_RS01905 at 471.535 kb on + strand, within HMPREF1078_RS01905 at 471.574 kb on + strand at 471.574 kb on + strand at 471.596 kb on + strand at 471.597 kb on - strand at 471.611 kb on + strand at 471.611 kb on + strand at 471.611 kb on + strand at 471.612 kb on - strand at 471.612 kb on - strand at 471.612 kb on - strand at 471.625 kb on - strand at 471.635 kb on + strand at 471.651 kb on + strand at 471.652 kb on - strand at 471.663 kb on + strand at 471.663 kb on + strand at 471.664 kb on - strand at 471.701 kb on + strand at 471.702 kb on - strand at 471.714 kb on + strand at 471.714 kb on + strand at 471.715 kb on - strand at 471.715 kb on - strand at 471.715 kb on - strand at 471.726 kb on - strand at 471.726 kb on - strand at 471.736 kb on + strand at 471.737 kb on - strand at 471.755 kb on + strand at 471.756 kb on - strand at 471.765 kb on + strand at 471.766 kb on - strand at 471.766 kb on - strand at 471.773 kb on - strand at 471.897 kb on - strand, within HMPREF1078_RS01910 at 471.912 kb on - strand, within HMPREF1078_RS01910 at 471.913 kb on + strand, within HMPREF1078_RS01910 at 471.915 kb on + strand, within HMPREF1078_RS01910 at 471.915 kb on + strand, within HMPREF1078_RS01910 at 471.915 kb on + strand, within HMPREF1078_RS01910 at 471.915 kb on + strand, within HMPREF1078_RS01910 at 471.915 kb on + strand, within HMPREF1078_RS01910 at 471.916 kb on - strand, within HMPREF1078_RS01910 at 471.916 kb on - strand, within HMPREF1078_RS01910 at 471.916 kb on - strand, within HMPREF1078_RS01910 at 471.922 kb on - strand, within HMPREF1078_RS01910 at 472.022 kb on - strand, within HMPREF1078_RS01910 at 472.022 kb on - strand, within HMPREF1078_RS01910 at 472.042 kb on - strand, within HMPREF1078_RS01910 at 472.043 kb on + strand, within HMPREF1078_RS01910 at 472.077 kb on - strand, within HMPREF1078_RS01910 at 472.099 kb on + strand, within HMPREF1078_RS01910 at 472.134 kb on - strand, within HMPREF1078_RS01910 at 472.151 kb on + strand, within HMPREF1078_RS01910 at 472.163 kb on + strand, within HMPREF1078_RS01910 at 472.178 kb on + strand, within HMPREF1078_RS01910 at 472.179 kb on - strand, within HMPREF1078_RS01910 at 472.180 kb on + strand, within HMPREF1078_RS01910 at 472.180 kb on + strand, within HMPREF1078_RS01910 at 472.180 kb on + strand, within HMPREF1078_RS01910 at 472.180 kb on + strand, within HMPREF1078_RS01910 at 472.181 kb on - strand, within HMPREF1078_RS01910 at 472.185 kb on - strand, within HMPREF1078_RS01910 at 472.247 kb on + strand, within HMPREF1078_RS01910 at 472.248 kb on - strand, within HMPREF1078_RS01910 at 472.302 kb on - strand, within HMPREF1078_RS01910 at 472.394 kb on + strand, within HMPREF1078_RS01910 at 472.394 kb on + strand, within HMPREF1078_RS01910 at 472.394 kb on + strand, within HMPREF1078_RS01910 at 472.394 kb on + strand, within HMPREF1078_RS01910 at 472.394 kb on + strand, within HMPREF1078_RS01910 at 472.394 kb on + strand, within HMPREF1078_RS01910 at 472.395 kb on - strand, within HMPREF1078_RS01910 at 472.413 kb on - strand, within HMPREF1078_RS01910 at 472.509 kb on - strand, within HMPREF1078_RS01910 at 472.518 kb on - strand, within HMPREF1078_RS01910 at 472.565 kb on + strand, within HMPREF1078_RS01910 at 472.570 kb on + strand, within HMPREF1078_RS01910 at 472.570 kb on + strand, within HMPREF1078_RS01910 at 472.570 kb on + strand, within HMPREF1078_RS01910 at 472.571 kb on - strand, within HMPREF1078_RS01910 at 472.571 kb on - strand, within HMPREF1078_RS01910 at 472.578 kb on + strand, within HMPREF1078_RS01910 at 472.584 kb on - strand, within HMPREF1078_RS01910 at 472.596 kb on + strand, within HMPREF1078_RS01910 at 472.596 kb on + strand, within HMPREF1078_RS01910 at 472.597 kb on - strand, within HMPREF1078_RS01910 at 472.599 kb on - strand, within HMPREF1078_RS01910
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 469,997 - HMPREF1078_RS01895 0.70 -2.6 470,074 - HMPREF1078_RS01895 0.73 -0.2 470,092 + HMPREF1078_RS01895 0.74 -0.9 470,170 + HMPREF1078_RS01895 0.78 -2.1 470,170 + HMPREF1078_RS01895 0.78 -0.8 470,176 + HMPREF1078_RS01895 0.78 -1.3 470,176 + HMPREF1078_RS01895 0.78 +0.2 470,176 + HMPREF1078_RS01895 0.78 -0.3 470,176 + HMPREF1078_RS01895 0.78 -1.5 470,177 - HMPREF1078_RS01895 0.78 -0.4 470,177 - HMPREF1078_RS01895 0.78 -1.1 470,177 - HMPREF1078_RS01895 0.78 -0.0 470,177 - HMPREF1078_RS01895 0.78 -1.6 470,242 - HMPREF1078_RS01895 0.81 -3.7 470,244 + HMPREF1078_RS01895 0.81 +1.8 470,280 + HMPREF1078_RS01895 0.82 +0.1 470,280 + HMPREF1078_RS01895 0.82 -0.2 470,281 - HMPREF1078_RS01895 0.83 -1.9 470,288 - HMPREF1078_RS01895 0.83 -0.5 470,397 - HMPREF1078_RS01895 0.88 -0.5 470,520 + -1.4 470,527 + -0.7 470,632 + -1.1 470,632 + +0.3 470,639 + +0.8 470,718 + -1.2 470,724 + +1.5 470,724 + +0.3 470,725 - -1.7 470,745 + -2.2 470,745 + -2.4 470,801 + HMPREF1078_RS01900 0.27 -0.5 470,817 + HMPREF1078_RS01900 0.34 -1.1 470,817 + HMPREF1078_RS01900 0.34 +0.6 470,949 - -3.4 470,981 + -2.6 470,982 - -3.2 470,982 - -0.0 470,982 - -2.0 470,982 - -2.4 471,049 + HMPREF1078_RS01905 0.14 -0.7 471,110 + HMPREF1078_RS01905 0.23 -5.0 471,121 + HMPREF1078_RS01905 0.25 -1.9 471,121 + HMPREF1078_RS01905 0.25 -5.4 471,121 + HMPREF1078_RS01905 0.25 -1.5 471,122 - HMPREF1078_RS01905 0.25 -2.7 471,122 - HMPREF1078_RS01905 0.25 +0.8 471,134 + HMPREF1078_RS01905 0.27 -3.0 471,152 + HMPREF1078_RS01905 0.30 -2.5 471,153 - HMPREF1078_RS01905 0.30 -1.6 471,215 + HMPREF1078_RS01905 0.39 -1.9 471,223 + HMPREF1078_RS01905 0.41 -1.5 471,224 - HMPREF1078_RS01905 0.41 -1.1 471,236 + HMPREF1078_RS01905 0.43 +0.5 471,236 + HMPREF1078_RS01905 0.43 -3.0 471,247 + HMPREF1078_RS01905 0.44 -1.8 471,248 - HMPREF1078_RS01905 0.44 -3.1 471,303 + HMPREF1078_RS01905 0.53 -2.5 471,304 - HMPREF1078_RS01905 0.53 -0.5 471,405 + HMPREF1078_RS01905 0.69 -2.0 471,405 + HMPREF1078_RS01905 0.69 -1.7 471,405 + HMPREF1078_RS01905 0.69 -2.3 471,406 - HMPREF1078_RS01905 0.69 -1.9 471,406 - HMPREF1078_RS01905 0.69 -3.0 471,406 - HMPREF1078_RS01905 0.69 -4.8 471,460 + HMPREF1078_RS01905 0.77 -2.6 471,499 - HMPREF1078_RS01905 0.83 -3.1 471,499 - HMPREF1078_RS01905 0.83 -1.9 471,527 + HMPREF1078_RS01905 0.87 +0.5 471,530 - HMPREF1078_RS01905 0.88 -3.2 471,530 - HMPREF1078_RS01905 0.88 -2.4 471,530 - HMPREF1078_RS01905 0.88 -2.5 471,533 + HMPREF1078_RS01905 0.88 -2.3 471,533 + HMPREF1078_RS01905 0.88 -0.7 471,533 + HMPREF1078_RS01905 0.88 -2.7 471,533 + HMPREF1078_RS01905 0.88 -2.9 471,533 + HMPREF1078_RS01905 0.88 +0.2 471,533 + HMPREF1078_RS01905 0.88 -1.4 471,534 - HMPREF1078_RS01905 0.88 -2.8 471,534 - HMPREF1078_RS01905 0.88 -2.0 471,535 + HMPREF1078_RS01905 0.88 -3.6 471,535 + HMPREF1078_RS01905 0.88 -2.6 471,574 + -3.6 471,574 + -3.0 471,596 + -3.9 471,597 - -0.2 471,611 + +0.1 471,611 + +0.4 471,611 + +0.8 471,612 - -0.2 471,612 - -0.3 471,612 - +0.2 471,625 - -0.8 471,635 + +0.1 471,651 + -0.2 471,652 - +0.1 471,663 + +0.5 471,663 + -2.1 471,664 - -0.7 471,701 + +0.2 471,702 - +0.6 471,714 + -0.9 471,714 + +0.4 471,715 - +1.3 471,715 - +0.6 471,715 - -1.4 471,726 - -0.7 471,726 - +0.4 471,736 + -0.1 471,737 - -3.1 471,755 + +0.1 471,756 - +0.1 471,765 + -1.7 471,766 - -2.0 471,766 - -1.5 471,773 - +0.1 471,897 - HMPREF1078_RS01910 0.11 +0.4 471,912 - HMPREF1078_RS01910 0.13 +0.2 471,913 + HMPREF1078_RS01910 0.13 -0.2 471,915 + HMPREF1078_RS01910 0.13 -0.3 471,915 + HMPREF1078_RS01910 0.13 +0.7 471,915 + HMPREF1078_RS01910 0.13 +1.0 471,915 + HMPREF1078_RS01910 0.13 -1.7 471,915 + HMPREF1078_RS01910 0.13 -0.3 471,916 - HMPREF1078_RS01910 0.13 -0.7 471,916 - HMPREF1078_RS01910 0.13 +2.5 471,916 - HMPREF1078_RS01910 0.13 -2.7 471,922 - HMPREF1078_RS01910 0.14 +0.7 472,022 - HMPREF1078_RS01910 0.24 +0.4 472,022 - HMPREF1078_RS01910 0.24 +2.3 472,042 - HMPREF1078_RS01910 0.26 -0.1 472,043 + HMPREF1078_RS01910 0.26 -0.4 472,077 - HMPREF1078_RS01910 0.30 -0.7 472,099 + HMPREF1078_RS01910 0.32 -1.8 472,134 - HMPREF1078_RS01910 0.35 -2.1 472,151 + HMPREF1078_RS01910 0.37 +0.2 472,163 + HMPREF1078_RS01910 0.38 +0.6 472,178 + HMPREF1078_RS01910 0.40 +0.9 472,179 - HMPREF1078_RS01910 0.40 +1.6 472,180 + HMPREF1078_RS01910 0.40 +1.3 472,180 + HMPREF1078_RS01910 0.40 -0.1 472,180 + HMPREF1078_RS01910 0.40 -0.4 472,180 + HMPREF1078_RS01910 0.40 +0.8 472,181 - HMPREF1078_RS01910 0.40 -1.0 472,185 - HMPREF1078_RS01910 0.40 -0.4 472,247 + HMPREF1078_RS01910 0.47 +0.1 472,248 - HMPREF1078_RS01910 0.47 -1.0 472,302 - HMPREF1078_RS01910 0.52 -0.7 472,394 + HMPREF1078_RS01910 0.62 +0.0 472,394 + HMPREF1078_RS01910 0.62 -0.9 472,394 + HMPREF1078_RS01910 0.62 +0.5 472,394 + HMPREF1078_RS01910 0.62 +1.4 472,394 + HMPREF1078_RS01910 0.62 -0.2 472,394 + HMPREF1078_RS01910 0.62 -0.5 472,395 - HMPREF1078_RS01910 0.62 -0.3 472,413 - HMPREF1078_RS01910 0.63 -0.9 472,509 - HMPREF1078_RS01910 0.73 -0.2 472,518 - HMPREF1078_RS01910 0.74 +0.5 472,565 + HMPREF1078_RS01910 0.79 -0.5 472,570 + HMPREF1078_RS01910 0.79 +0.4 472,570 + HMPREF1078_RS01910 0.79 +0.2 472,570 + HMPREF1078_RS01910 0.79 +0.3 472,571 - HMPREF1078_RS01910 0.79 -0.2 472,571 - HMPREF1078_RS01910 0.79 +0.3 472,578 + HMPREF1078_RS01910 0.80 -0.5 472,584 - HMPREF1078_RS01910 0.81 -0.5 472,596 + HMPREF1078_RS01910 0.82 +1.1 472,596 + HMPREF1078_RS01910 0.82 -0.3 472,597 - HMPREF1078_RS01910 0.82 +2.6 472,599 - HMPREF1078_RS01910 0.82 -2.4
Or see this region's nucleotide sequence