Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01090 and HMPREF1078_RS01095 are separated by 98 nucleotides HMPREF1078_RS01095 and HMPREF1078_RS01100 are separated by 299 nucleotides
HMPREF1078_RS01090: HMPREF1078_RS01090 - DUF362 domain-containing protein, at 274,597 to 275,529
_RS01090
HMPREF1078_RS01095: HMPREF1078_RS01095 - hypothetical protein, at 275,628 to 276,422
_RS01095
HMPREF1078_RS01100: HMPREF1078_RS01100 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 276,722 to 277,897
_RS01100
Position (kb) 275
276
277 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 274.639 kb on - strand at 274.650 kb on + strand at 274.702 kb on + strand, within HMPREF1078_RS01090 at 274.776 kb on + strand, within HMPREF1078_RS01090 at 274.777 kb on - strand, within HMPREF1078_RS01090 at 274.870 kb on - strand, within HMPREF1078_RS01090 at 274.884 kb on + strand, within HMPREF1078_RS01090 at 274.942 kb on - strand, within HMPREF1078_RS01090 at 275.033 kb on - strand, within HMPREF1078_RS01090 at 275.033 kb on - strand, within HMPREF1078_RS01090 at 275.243 kb on - strand, within HMPREF1078_RS01090 at 275.281 kb on - strand, within HMPREF1078_RS01090 at 275.331 kb on + strand, within HMPREF1078_RS01090 at 275.334 kb on - strand, within HMPREF1078_RS01090 at 275.334 kb on - strand, within HMPREF1078_RS01090 at 275.334 kb on - strand, within HMPREF1078_RS01090 at 275.360 kb on - strand, within HMPREF1078_RS01090 at 275.399 kb on - strand, within HMPREF1078_RS01090 at 275.425 kb on + strand, within HMPREF1078_RS01090 at 275.436 kb on + strand at 275.437 kb on - strand at 275.437 kb on - strand at 275.459 kb on - strand at 275.479 kb on + strand at 275.485 kb on + strand at 275.494 kb on + strand at 275.546 kb on + strand at 275.546 kb on + strand at 275.550 kb on + strand at 275.566 kb on + strand at 275.592 kb on - strand at 275.592 kb on - strand at 275.635 kb on + strand at 275.636 kb on - strand at 275.638 kb on - strand at 275.643 kb on + strand at 275.643 kb on + strand at 275.654 kb on - strand at 275.717 kb on + strand, within HMPREF1078_RS01095 at 275.727 kb on + strand, within HMPREF1078_RS01095 at 275.727 kb on + strand, within HMPREF1078_RS01095 at 275.728 kb on - strand, within HMPREF1078_RS01095 at 275.728 kb on - strand, within HMPREF1078_RS01095 at 275.823 kb on - strand, within HMPREF1078_RS01095 at 275.823 kb on - strand, within HMPREF1078_RS01095 at 275.834 kb on + strand, within HMPREF1078_RS01095 at 275.889 kb on + strand, within HMPREF1078_RS01095 at 275.890 kb on - strand, within HMPREF1078_RS01095 at 275.992 kb on - strand, within HMPREF1078_RS01095 at 275.993 kb on + strand, within HMPREF1078_RS01095 at 276.030 kb on + strand, within HMPREF1078_RS01095 at 276.031 kb on - strand, within HMPREF1078_RS01095 at 276.032 kb on + strand, within HMPREF1078_RS01095 at 276.033 kb on - strand, within HMPREF1078_RS01095 at 276.082 kb on - strand, within HMPREF1078_RS01095 at 276.250 kb on + strand, within HMPREF1078_RS01095 at 276.257 kb on + strand, within HMPREF1078_RS01095 at 276.270 kb on + strand, within HMPREF1078_RS01095 at 276.340 kb on + strand, within HMPREF1078_RS01095 at 276.340 kb on + strand, within HMPREF1078_RS01095 at 276.341 kb on - strand, within HMPREF1078_RS01095 at 276.348 kb on - strand at 276.377 kb on - strand at 276.460 kb on + strand at 276.460 kb on + strand at 276.461 kb on - strand at 276.503 kb on - strand at 276.544 kb on + strand at 276.553 kb on + strand at 276.574 kb on - strand at 276.587 kb on + strand at 276.587 kb on + strand at 276.593 kb on + strand at 276.593 kb on + strand at 276.593 kb on + strand at 276.593 kb on + strand at 276.593 kb on + strand at 276.594 kb on - strand at 276.594 kb on - strand at 276.594 kb on - strand at 276.595 kb on + strand at 276.628 kb on + strand at 276.740 kb on + strand at 276.740 kb on + strand at 276.741 kb on - strand at 276.741 kb on - strand at 276.741 kb on - strand at 276.741 kb on - strand at 276.741 kb on - strand at 276.828 kb on + strand at 276.828 kb on + strand at 276.828 kb on + strand at 276.829 kb on - strand at 276.834 kb on - strand at 276.908 kb on - strand, within HMPREF1078_RS01100 at 277.101 kb on - strand, within HMPREF1078_RS01100 at 277.101 kb on - strand, within HMPREF1078_RS01100 at 277.138 kb on + strand, within HMPREF1078_RS01100 at 277.147 kb on + strand, within HMPREF1078_RS01100 at 277.197 kb on + strand, within HMPREF1078_RS01100 at 277.222 kb on - strand, within HMPREF1078_RS01100 at 277.363 kb on - strand, within HMPREF1078_RS01100 at 277.376 kb on - strand, within HMPREF1078_RS01100 at 277.413 kb on + strand, within HMPREF1078_RS01100 at 277.415 kb on - strand, within HMPREF1078_RS01100 at 277.417 kb on - strand, within HMPREF1078_RS01100
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 274,639 - -0.4 274,650 + -1.2 274,702 + HMPREF1078_RS01090 0.11 -0.5 274,776 + HMPREF1078_RS01090 0.19 -0.2 274,777 - HMPREF1078_RS01090 0.19 -0.4 274,870 - HMPREF1078_RS01090 0.29 +1.3 274,884 + HMPREF1078_RS01090 0.31 -0.1 274,942 - HMPREF1078_RS01090 0.37 -1.7 275,033 - HMPREF1078_RS01090 0.47 -1.2 275,033 - HMPREF1078_RS01090 0.47 -0.9 275,243 - HMPREF1078_RS01090 0.69 -0.0 275,281 - HMPREF1078_RS01090 0.73 -1.7 275,331 + HMPREF1078_RS01090 0.79 +1.2 275,334 - HMPREF1078_RS01090 0.79 -0.2 275,334 - HMPREF1078_RS01090 0.79 -0.0 275,334 - HMPREF1078_RS01090 0.79 +0.9 275,360 - HMPREF1078_RS01090 0.82 -0.4 275,399 - HMPREF1078_RS01090 0.86 +2.0 275,425 + HMPREF1078_RS01090 0.89 +0.3 275,436 + -0.4 275,437 - -0.0 275,437 - -1.4 275,459 - -0.4 275,479 + -1.9 275,485 + -0.0 275,494 + -1.8 275,546 + -3.1 275,546 + +0.8 275,550 + +0.2 275,566 + -3.2 275,592 - -0.4 275,592 - +1.6 275,635 + -0.1 275,636 - +3.3 275,638 - -0.8 275,643 + +1.0 275,643 + -1.0 275,654 - -0.4 275,717 + HMPREF1078_RS01095 0.11 -1.8 275,727 + HMPREF1078_RS01095 0.12 +0.3 275,727 + HMPREF1078_RS01095 0.12 -0.5 275,728 - HMPREF1078_RS01095 0.13 +0.2 275,728 - HMPREF1078_RS01095 0.13 +1.3 275,823 - HMPREF1078_RS01095 0.25 -2.2 275,823 - HMPREF1078_RS01095 0.25 -1.4 275,834 + HMPREF1078_RS01095 0.26 -0.8 275,889 + HMPREF1078_RS01095 0.33 -0.3 275,890 - HMPREF1078_RS01095 0.33 -0.1 275,992 - HMPREF1078_RS01095 0.46 +0.7 275,993 + HMPREF1078_RS01095 0.46 +0.6 276,030 + HMPREF1078_RS01095 0.51 -0.4 276,031 - HMPREF1078_RS01095 0.51 +0.5 276,032 + HMPREF1078_RS01095 0.51 -0.3 276,033 - HMPREF1078_RS01095 0.51 -1.0 276,082 - HMPREF1078_RS01095 0.57 -0.2 276,250 + HMPREF1078_RS01095 0.78 +0.3 276,257 + HMPREF1078_RS01095 0.79 +0.4 276,270 + HMPREF1078_RS01095 0.81 -0.8 276,340 + HMPREF1078_RS01095 0.90 -1.0 276,340 + HMPREF1078_RS01095 0.90 -1.3 276,341 - HMPREF1078_RS01095 0.90 -1.0 276,348 - +1.1 276,377 - -0.5 276,460 + -3.4 276,460 + -1.4 276,461 - -0.1 276,503 - +0.2 276,544 + +0.6 276,553 + -0.3 276,574 - -2.2 276,587 + -0.7 276,587 + -0.4 276,593 + -2.3 276,593 + -0.8 276,593 + +0.4 276,593 + -1.8 276,593 + +1.9 276,594 - +0.3 276,594 - -2.2 276,594 - +0.6 276,595 + +0.1 276,628 + -2.3 276,740 + -0.4 276,740 + -0.9 276,741 - -1.1 276,741 - +0.4 276,741 - +0.5 276,741 - -1.3 276,741 - -0.5 276,828 + +0.3 276,828 + -0.4 276,828 + -1.6 276,829 - -0.7 276,834 - +0.2 276,908 - HMPREF1078_RS01100 0.16 -0.7 277,101 - HMPREF1078_RS01100 0.32 -0.1 277,101 - HMPREF1078_RS01100 0.32 -0.4 277,138 + HMPREF1078_RS01100 0.35 +1.5 277,147 + HMPREF1078_RS01100 0.36 +0.5 277,197 + HMPREF1078_RS01100 0.40 -0.4 277,222 - HMPREF1078_RS01100 0.43 +0.7 277,363 - HMPREF1078_RS01100 0.55 -0.9 277,376 - HMPREF1078_RS01100 0.56 -0.2 277,413 + HMPREF1078_RS01100 0.59 +0.5 277,415 - HMPREF1078_RS01100 0.59 +0.4 277,417 - HMPREF1078_RS01100 0.59 -2.3
Or see this region's nucleotide sequence