Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00200

Experiment: D-Maltose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS00195 and HMPREF1078_RS00200 are separated by 68 nucleotidesHMPREF1078_RS00200 and HMPREF1078_RS00205 are separated by 5 nucleotidesHMPREF1078_RS00205 and HMPREF1078_RS00210 are separated by 24 nucleotides HMPREF1078_RS00195: HMPREF1078_RS00195 - undecaprenyl-phosphate glucose phosphotransferase, at 45,782 to 47,179 _RS00195 HMPREF1078_RS00200: HMPREF1078_RS00200 - Holliday junction resolvase RuvX, at 47,248 to 47,670 _RS00200 HMPREF1078_RS00205: HMPREF1078_RS00205 - peptide deformylase, at 47,676 to 48,233 _RS00205 HMPREF1078_RS00210: HMPREF1078_RS00210 - acyl-CoA carboxylase subunit beta, at 48,258 to 49,805 _RS00210 Position (kb) 47 48Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 46.251 kb on + strand, within HMPREF1078_RS00195at 46.251 kb on + strand, within HMPREF1078_RS00195at 46.252 kb on - strand, within HMPREF1078_RS00195at 46.253 kb on + strand, within HMPREF1078_RS00195at 46.254 kb on - strand, within HMPREF1078_RS00195at 46.254 kb on - strand, within HMPREF1078_RS00195at 46.255 kb on + strand, within HMPREF1078_RS00195at 46.255 kb on + strand, within HMPREF1078_RS00195at 46.255 kb on + strand, within HMPREF1078_RS00195at 46.255 kb on + strand, within HMPREF1078_RS00195at 46.255 kb on + strand, within HMPREF1078_RS00195at 46.255 kb on + strand, within HMPREF1078_RS00195at 46.255 kb on + strand, within HMPREF1078_RS00195at 46.256 kb on - strand, within HMPREF1078_RS00195at 46.256 kb on - strand, within HMPREF1078_RS00195at 46.256 kb on - strand, within HMPREF1078_RS00195at 46.256 kb on - strand, within HMPREF1078_RS00195at 46.256 kb on - strand, within HMPREF1078_RS00195at 46.256 kb on - strand, within HMPREF1078_RS00195at 46.260 kb on + strand, within HMPREF1078_RS00195at 46.260 kb on + strand, within HMPREF1078_RS00195at 46.261 kb on - strand, within HMPREF1078_RS00195at 46.292 kb on - strand, within HMPREF1078_RS00195at 46.312 kb on + strand, within HMPREF1078_RS00195at 46.313 kb on - strand, within HMPREF1078_RS00195at 46.316 kb on - strand, within HMPREF1078_RS00195at 46.343 kb on + strand, within HMPREF1078_RS00195at 46.404 kb on - strand, within HMPREF1078_RS00195at 46.408 kb on + strand, within HMPREF1078_RS00195at 46.481 kb on + strand, within HMPREF1078_RS00195at 46.482 kb on - strand, within HMPREF1078_RS00195at 46.482 kb on - strand, within HMPREF1078_RS00195at 46.484 kb on - strand, within HMPREF1078_RS00195at 46.575 kb on + strand, within HMPREF1078_RS00195at 46.576 kb on - strand, within HMPREF1078_RS00195at 46.587 kb on - strand, within HMPREF1078_RS00195at 46.632 kb on + strand, within HMPREF1078_RS00195at 46.632 kb on + strand, within HMPREF1078_RS00195at 46.633 kb on - strand, within HMPREF1078_RS00195at 46.633 kb on - strand, within HMPREF1078_RS00195at 46.645 kb on + strand, within HMPREF1078_RS00195at 46.645 kb on + strand, within HMPREF1078_RS00195at 46.646 kb on - strand, within HMPREF1078_RS00195at 46.646 kb on - strand, within HMPREF1078_RS00195at 46.646 kb on - strand, within HMPREF1078_RS00195at 46.646 kb on - strand, within HMPREF1078_RS00195at 46.647 kb on + strand, within HMPREF1078_RS00195at 46.647 kb on + strand, within HMPREF1078_RS00195at 46.647 kb on + strand, within HMPREF1078_RS00195at 46.659 kb on + strand, within HMPREF1078_RS00195at 46.659 kb on + strand, within HMPREF1078_RS00195at 46.659 kb on + strand, within HMPREF1078_RS00195at 46.660 kb on - strand, within HMPREF1078_RS00195at 46.660 kb on - strand, within HMPREF1078_RS00195at 46.660 kb on - strand, within HMPREF1078_RS00195at 46.660 kb on - strand, within HMPREF1078_RS00195at 46.661 kb on + strand, within HMPREF1078_RS00195at 46.661 kb on + strand, within HMPREF1078_RS00195at 46.661 kb on + strand, within HMPREF1078_RS00195at 46.661 kb on + strand, within HMPREF1078_RS00195at 46.662 kb on - strand, within HMPREF1078_RS00195at 46.662 kb on - strand, within HMPREF1078_RS00195at 46.662 kb on - strand, within HMPREF1078_RS00195at 46.662 kb on - strand, within HMPREF1078_RS00195at 46.662 kb on - strand, within HMPREF1078_RS00195at 46.662 kb on - strand, within HMPREF1078_RS00195at 46.662 kb on - strand, within HMPREF1078_RS00195at 46.662 kb on - strand, within HMPREF1078_RS00195at 46.662 kb on - strand, within HMPREF1078_RS00195at 46.663 kb on + strand, within HMPREF1078_RS00195at 46.663 kb on + strand, within HMPREF1078_RS00195at 46.664 kb on - strand, within HMPREF1078_RS00195at 46.710 kb on + strand, within HMPREF1078_RS00195at 46.714 kb on + strand, within HMPREF1078_RS00195at 46.736 kb on + strand, within HMPREF1078_RS00195at 46.736 kb on + strand, within HMPREF1078_RS00195at 46.737 kb on - strand, within HMPREF1078_RS00195at 46.737 kb on - strand, within HMPREF1078_RS00195at 46.737 kb on - strand, within HMPREF1078_RS00195at 46.759 kb on + strand, within HMPREF1078_RS00195at 46.759 kb on + strand, within HMPREF1078_RS00195at 46.759 kb on + strand, within HMPREF1078_RS00195at 46.760 kb on - strand, within HMPREF1078_RS00195at 46.760 kb on - strand, within HMPREF1078_RS00195at 46.760 kb on - strand, within HMPREF1078_RS00195at 46.760 kb on - strand, within HMPREF1078_RS00195at 46.760 kb on - strand, within HMPREF1078_RS00195at 46.760 kb on - strand, within HMPREF1078_RS00195at 46.781 kb on - strand, within HMPREF1078_RS00195at 46.858 kb on + strand, within HMPREF1078_RS00195at 46.882 kb on + strand, within HMPREF1078_RS00195at 46.882 kb on + strand, within HMPREF1078_RS00195at 46.885 kb on + strand, within HMPREF1078_RS00195at 46.885 kb on + strand, within HMPREF1078_RS00195at 46.915 kb on - strand, within HMPREF1078_RS00195at 46.930 kb on + strand, within HMPREF1078_RS00195at 46.943 kb on - strand, within HMPREF1078_RS00195at 46.952 kb on + strand, within HMPREF1078_RS00195at 46.952 kb on + strand, within HMPREF1078_RS00195at 46.953 kb on - strand, within HMPREF1078_RS00195at 46.953 kb on - strand, within HMPREF1078_RS00195at 46.953 kb on - strand, within HMPREF1078_RS00195at 46.953 kb on - strand, within HMPREF1078_RS00195at 46.973 kb on + strand, within HMPREF1078_RS00195at 46.973 kb on + strand, within HMPREF1078_RS00195at 46.973 kb on + strand, within HMPREF1078_RS00195at 46.973 kb on + strand, within HMPREF1078_RS00195at 46.973 kb on + strand, within HMPREF1078_RS00195at 46.974 kb on - strand, within HMPREF1078_RS00195at 46.974 kb on - strand, within HMPREF1078_RS00195at 46.974 kb on - strand, within HMPREF1078_RS00195at 46.974 kb on - strand, within HMPREF1078_RS00195at 46.974 kb on - strand, within HMPREF1078_RS00195at 46.975 kb on + strand, within HMPREF1078_RS00195at 46.975 kb on + strand, within HMPREF1078_RS00195at 46.976 kb on - strand, within HMPREF1078_RS00195at 46.976 kb on - strand, within HMPREF1078_RS00195at 47.030 kb on + strand, within HMPREF1078_RS00195at 47.031 kb on - strand, within HMPREF1078_RS00195at 47.090 kb on + strandat 47.090 kb on + strandat 47.090 kb on + strandat 47.091 kb on - strandat 47.122 kb on + strandat 47.123 kb on - strandat 47.130 kb on + strandat 47.130 kb on + strandat 47.130 kb on + strandat 47.131 kb on - strandat 47.131 kb on - strandat 47.149 kb on + strandat 47.150 kb on - strandat 47.174 kb on + strandat 47.174 kb on + strandat 47.175 kb on - strandat 47.177 kb on + strandat 47.177 kb on + strandat 47.177 kb on + strandat 47.178 kb on - strandat 47.178 kb on - strandat 47.178 kb on - strandat 47.184 kb on + strandat 47.185 kb on - strandat 47.202 kb on + strandat 47.204 kb on + strandat 47.205 kb on - strandat 47.205 kb on - strandat 47.206 kb on + strandat 47.206 kb on + strandat 47.206 kb on + strandat 47.207 kb on - strandat 47.207 kb on - strandat 47.213 kb on - strandat 47.229 kb on + strandat 47.259 kb on + strandat 47.261 kb on + strandat 47.261 kb on + strandat 47.377 kb on + strand, within HMPREF1078_RS00200at 47.458 kb on + strand, within HMPREF1078_RS00200at 47.474 kb on + strand, within HMPREF1078_RS00200at 47.474 kb on + strand, within HMPREF1078_RS00200at 47.595 kb on + strand, within HMPREF1078_RS00200at 47.628 kb on + strandat 47.628 kb on + strandat 47.652 kb on + strandat 47.659 kb on + strandat 47.659 kb on + strandat 47.666 kb on + strandat 47.675 kb on + strandat 48.176 kb on + strand, within HMPREF1078_RS00205at 48.179 kb on + strandat 48.185 kb on + strandat 48.227 kb on + strandat 48.228 kb on - strandat 48.231 kb on + strandat 48.231 kb on + strandat 48.231 kb on + strandat 48.231 kb on + strandat 48.231 kb on + strandat 48.243 kb on + strandat 48.243 kb on + strandat 48.243 kb on + strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.380 kb on + strandat 48.381 kb on - strandat 48.417 kb on + strand, within HMPREF1078_RS00210at 48.527 kb on + strand, within HMPREF1078_RS00210at 48.527 kb on + strand, within HMPREF1078_RS00210at 48.531 kb on + strand, within HMPREF1078_RS00210at 48.532 kb on - strand, within HMPREF1078_RS00210at 48.584 kb on + strand, within HMPREF1078_RS00210at 48.584 kb on + strand, within HMPREF1078_RS00210at 48.584 kb on + strand, within HMPREF1078_RS00210at 48.585 kb on - strand, within HMPREF1078_RS00210at 48.585 kb on - strand, within HMPREF1078_RS00210at 48.632 kb on + strand, within HMPREF1078_RS00210at 48.639 kb on - strand, within HMPREF1078_RS00210at 48.662 kb on + strand, within HMPREF1078_RS00210at 48.663 kb on - strand, within HMPREF1078_RS00210at 48.663 kb on - strand, within HMPREF1078_RS00210

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C)
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46,251 + HMPREF1078_RS00195 0.34 +2.2
46,251 + HMPREF1078_RS00195 0.34 +0.5
46,252 - HMPREF1078_RS00195 0.34 -1.1
46,253 + HMPREF1078_RS00195 0.34 +1.0
46,254 - HMPREF1078_RS00195 0.34 -0.9
46,254 - HMPREF1078_RS00195 0.34 -0.1
46,255 + HMPREF1078_RS00195 0.34 -0.1
46,255 + HMPREF1078_RS00195 0.34 -0.3
46,255 + HMPREF1078_RS00195 0.34 -0.5
46,255 + HMPREF1078_RS00195 0.34 +0.8
46,255 + HMPREF1078_RS00195 0.34 +0.7
46,255 + HMPREF1078_RS00195 0.34 +0.9
46,255 + HMPREF1078_RS00195 0.34 +0.7
46,256 - HMPREF1078_RS00195 0.34 +1.6
46,256 - HMPREF1078_RS00195 0.34 -1.9
46,256 - HMPREF1078_RS00195 0.34 -0.2
46,256 - HMPREF1078_RS00195 0.34 +0.0
46,256 - HMPREF1078_RS00195 0.34 -1.0
46,256 - HMPREF1078_RS00195 0.34 -1.8
46,260 + HMPREF1078_RS00195 0.34 -0.1
46,260 + HMPREF1078_RS00195 0.34 -0.4
46,261 - HMPREF1078_RS00195 0.34 -0.3
46,292 - HMPREF1078_RS00195 0.36 -3.1
46,312 + HMPREF1078_RS00195 0.38 +0.2
46,313 - HMPREF1078_RS00195 0.38 -0.1
46,316 - HMPREF1078_RS00195 0.38 -1.5
46,343 + HMPREF1078_RS00195 0.40 +0.5
46,404 - HMPREF1078_RS00195 0.44 +3.5
46,408 + HMPREF1078_RS00195 0.45 -0.5
46,481 + HMPREF1078_RS00195 0.50 -0.4
46,482 - HMPREF1078_RS00195 0.50 +1.9
46,482 - HMPREF1078_RS00195 0.50 +0.3
46,484 - HMPREF1078_RS00195 0.50 +1.4
46,575 + HMPREF1078_RS00195 0.57 +2.1
46,576 - HMPREF1078_RS00195 0.57 -1.0
46,587 - HMPREF1078_RS00195 0.58 -1.6
46,632 + HMPREF1078_RS00195 0.61 -0.8
46,632 + HMPREF1078_RS00195 0.61 -0.1
46,633 - HMPREF1078_RS00195 0.61 +0.0
46,633 - HMPREF1078_RS00195 0.61 -0.4
46,645 + HMPREF1078_RS00195 0.62 -0.6
46,645 + HMPREF1078_RS00195 0.62 -1.2
46,646 - HMPREF1078_RS00195 0.62 -1.0
46,646 - HMPREF1078_RS00195 0.62 +3.7
46,646 - HMPREF1078_RS00195 0.62 +0.2
46,646 - HMPREF1078_RS00195 0.62 -1.1
46,647 + HMPREF1078_RS00195 0.62 -1.5
46,647 + HMPREF1078_RS00195 0.62 -0.7
46,647 + HMPREF1078_RS00195 0.62 -0.1
46,659 + HMPREF1078_RS00195 0.63 -0.7
46,659 + HMPREF1078_RS00195 0.63 -0.8
46,659 + HMPREF1078_RS00195 0.63 -0.4
46,660 - HMPREF1078_RS00195 0.63 -2.9
46,660 - HMPREF1078_RS00195 0.63 -0.1
46,660 - HMPREF1078_RS00195 0.63 -3.4
46,660 - HMPREF1078_RS00195 0.63 -2.0
46,661 + HMPREF1078_RS00195 0.63 -0.9
46,661 + HMPREF1078_RS00195 0.63 -0.8
46,661 + HMPREF1078_RS00195 0.63 -2.1
46,661 + HMPREF1078_RS00195 0.63 -1.4
46,662 - HMPREF1078_RS00195 0.63 +0.1
46,662 - HMPREF1078_RS00195 0.63 -2.1
46,662 - HMPREF1078_RS00195 0.63 -1.3
46,662 - HMPREF1078_RS00195 0.63 -1.3
46,662 - HMPREF1078_RS00195 0.63 -1.0
46,662 - HMPREF1078_RS00195 0.63 -0.8
46,662 - HMPREF1078_RS00195 0.63 -1.2
46,662 - HMPREF1078_RS00195 0.63 +0.0
46,662 - HMPREF1078_RS00195 0.63 +0.6
46,663 + HMPREF1078_RS00195 0.63 -1.0
46,663 + HMPREF1078_RS00195 0.63 +0.8
46,664 - HMPREF1078_RS00195 0.63 -0.9
46,710 + HMPREF1078_RS00195 0.66 -0.9
46,714 + HMPREF1078_RS00195 0.67 -0.3
46,736 + HMPREF1078_RS00195 0.68 -0.4
46,736 + HMPREF1078_RS00195 0.68 -0.1
46,737 - HMPREF1078_RS00195 0.68 -0.2
46,737 - HMPREF1078_RS00195 0.68 -0.4
46,737 - HMPREF1078_RS00195 0.68 -2.7
46,759 + HMPREF1078_RS00195 0.70 -3.2
46,759 + HMPREF1078_RS00195 0.70 -0.2
46,759 + HMPREF1078_RS00195 0.70 -0.6
46,760 - HMPREF1078_RS00195 0.70 -1.8
46,760 - HMPREF1078_RS00195 0.70 +0.1
46,760 - HMPREF1078_RS00195 0.70 -0.8
46,760 - HMPREF1078_RS00195 0.70 -1.8
46,760 - HMPREF1078_RS00195 0.70 -1.7
46,760 - HMPREF1078_RS00195 0.70 -0.4
46,781 - HMPREF1078_RS00195 0.71 +1.2
46,858 + HMPREF1078_RS00195 0.77 -1.2
46,882 + HMPREF1078_RS00195 0.79 -0.4
46,882 + HMPREF1078_RS00195 0.79 -1.0
46,885 + HMPREF1078_RS00195 0.79 +1.1
46,885 + HMPREF1078_RS00195 0.79 +0.0
46,915 - HMPREF1078_RS00195 0.81 +0.5
46,930 + HMPREF1078_RS00195 0.82 -0.4
46,943 - HMPREF1078_RS00195 0.83 +3.4
46,952 + HMPREF1078_RS00195 0.84 +0.1
46,952 + HMPREF1078_RS00195 0.84 -1.4
46,953 - HMPREF1078_RS00195 0.84 -0.4
46,953 - HMPREF1078_RS00195 0.84 -1.1
46,953 - HMPREF1078_RS00195 0.84 +1.5
46,953 - HMPREF1078_RS00195 0.84 -0.1
46,973 + HMPREF1078_RS00195 0.85 +0.5
46,973 + HMPREF1078_RS00195 0.85 -0.8
46,973 + HMPREF1078_RS00195 0.85 +0.5
46,973 + HMPREF1078_RS00195 0.85 -0.3
46,973 + HMPREF1078_RS00195 0.85 +0.3
46,974 - HMPREF1078_RS00195 0.85 -1.7
46,974 - HMPREF1078_RS00195 0.85 +1.0
46,974 - HMPREF1078_RS00195 0.85 -0.3
46,974 - HMPREF1078_RS00195 0.85 -0.1
46,974 - HMPREF1078_RS00195 0.85 -0.3
46,975 + HMPREF1078_RS00195 0.85 +0.3
46,975 + HMPREF1078_RS00195 0.85 +0.5
46,976 - HMPREF1078_RS00195 0.85 -0.2
46,976 - HMPREF1078_RS00195 0.85 -0.5
47,030 + HMPREF1078_RS00195 0.89 -0.4
47,031 - HMPREF1078_RS00195 0.89 -2.0
47,090 + +3.7
47,090 + -0.0
47,090 + -1.0
47,091 - -3.0
47,122 + -0.6
47,123 - +0.0
47,130 + -2.4
47,130 + -2.9
47,130 + -0.8
47,131 - -1.2
47,131 - -0.7
47,149 + -0.1
47,150 - -2.4
47,174 + -1.2
47,174 + +0.3
47,175 - +0.1
47,177 + +2.6
47,177 + +0.3
47,177 + -0.1
47,178 - -2.3
47,178 - -2.7
47,178 - -0.9
47,184 + -1.9
47,185 - -2.0
47,202 + -0.9
47,204 + -0.7
47,205 - -0.2
47,205 - -1.2
47,206 + -0.6
47,206 + -0.6
47,206 + -1.9
47,207 - +0.5
47,207 - -1.8
47,213 - -2.8
47,229 + -1.4
47,259 + +0.0
47,261 + -0.4
47,261 + +0.8
47,377 + HMPREF1078_RS00200 0.30 +0.0
47,458 + HMPREF1078_RS00200 0.50 -0.4
47,474 + HMPREF1078_RS00200 0.53 -1.4
47,474 + HMPREF1078_RS00200 0.53 +0.8
47,595 + HMPREF1078_RS00200 0.82 +0.0
47,628 + +1.4
47,628 + -1.7
47,652 + -3.5
47,659 + -0.9
47,659 + -0.9
47,666 + -3.7
47,675 + -3.1
48,176 + HMPREF1078_RS00205 0.90 -0.5
48,179 + +0.5
48,185 + -3.8
48,227 + -3.3
48,228 - -0.5
48,231 + -1.8
48,231 + -2.5
48,231 + -2.0
48,231 + -0.9
48,231 + -0.6
48,243 + -1.3
48,243 + -2.7
48,243 + -2.9
48,247 - +0.8
48,247 - +0.2
48,247 - +0.2
48,380 + +0.2
48,381 - +0.5
48,417 + HMPREF1078_RS00210 0.10 +0.5
48,527 + HMPREF1078_RS00210 0.17 -1.0
48,527 + HMPREF1078_RS00210 0.17 +0.5
48,531 + HMPREF1078_RS00210 0.18 +0.0
48,532 - HMPREF1078_RS00210 0.18 -1.4
48,584 + HMPREF1078_RS00210 0.21 -0.8
48,584 + HMPREF1078_RS00210 0.21 +0.2
48,584 + HMPREF1078_RS00210 0.21 +0.8
48,585 - HMPREF1078_RS00210 0.21 +0.0
48,585 - HMPREF1078_RS00210 0.21 -0.6
48,632 + HMPREF1078_RS00210 0.24 +0.2
48,639 - HMPREF1078_RS00210 0.25 +0.2
48,662 + HMPREF1078_RS00210 0.26 +0.2
48,663 - HMPREF1078_RS00210 0.26 +0.5
48,663 - HMPREF1078_RS00210 0.26 +0.5

Or see this region's nucleotide sequence