Experiment: Beta-Lactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15840 and HMPREF1078_RS15845 are separated by 232 nucleotides HMPREF1078_RS15845 and HMPREF1078_RS15850 are separated by 75 nucleotides HMPREF1078_RS15850 and HMPREF1078_RS15855 overlap by 4 nucleotides
HMPREF1078_RS15840: HMPREF1078_RS15840 - DMT family transporter, at 283,369 to 284,298
_RS15840
HMPREF1078_RS15845: HMPREF1078_RS15845 - copper homeostasis protein CutC, at 284,531 to 285,268
_RS15845
HMPREF1078_RS15850: HMPREF1078_RS15850 - PspC domain-containing protein, at 285,344 to 285,547
_RS15850
HMPREF1078_RS15855: HMPREF1078_RS15855 - excinuclease ABC subunit UvrB, at 285,544 to 287,571
_RS15855
Position (kb) 284
285
286 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 283.535 kb on + strand, within HMPREF1078_RS15840 at 283.535 kb on + strand, within HMPREF1078_RS15840 at 283.536 kb on - strand, within HMPREF1078_RS15840 at 283.536 kb on - strand, within HMPREF1078_RS15840 at 283.559 kb on - strand, within HMPREF1078_RS15840 at 283.630 kb on + strand, within HMPREF1078_RS15840 at 283.630 kb on + strand, within HMPREF1078_RS15840 at 283.634 kb on + strand, within HMPREF1078_RS15840 at 283.638 kb on + strand, within HMPREF1078_RS15840 at 283.638 kb on + strand, within HMPREF1078_RS15840 at 283.682 kb on + strand, within HMPREF1078_RS15840 at 283.683 kb on - strand, within HMPREF1078_RS15840 at 283.698 kb on + strand, within HMPREF1078_RS15840 at 283.698 kb on + strand, within HMPREF1078_RS15840 at 283.699 kb on - strand, within HMPREF1078_RS15840 at 283.770 kb on - strand, within HMPREF1078_RS15840 at 283.770 kb on - strand, within HMPREF1078_RS15840 at 283.778 kb on - strand, within HMPREF1078_RS15840 at 283.781 kb on + strand, within HMPREF1078_RS15840 at 283.782 kb on - strand, within HMPREF1078_RS15840 at 283.782 kb on - strand, within HMPREF1078_RS15840 at 283.818 kb on + strand, within HMPREF1078_RS15840 at 283.819 kb on - strand, within HMPREF1078_RS15840 at 283.819 kb on - strand, within HMPREF1078_RS15840 at 283.852 kb on + strand, within HMPREF1078_RS15840 at 284.008 kb on + strand, within HMPREF1078_RS15840 at 284.008 kb on + strand, within HMPREF1078_RS15840 at 284.037 kb on + strand, within HMPREF1078_RS15840 at 284.038 kb on - strand, within HMPREF1078_RS15840 at 284.038 kb on - strand, within HMPREF1078_RS15840 at 284.039 kb on + strand, within HMPREF1078_RS15840 at 284.039 kb on + strand, within HMPREF1078_RS15840 at 284.040 kb on - strand, within HMPREF1078_RS15840 at 284.044 kb on - strand, within HMPREF1078_RS15840 at 284.044 kb on - strand, within HMPREF1078_RS15840 at 284.056 kb on + strand, within HMPREF1078_RS15840 at 284.179 kb on + strand, within HMPREF1078_RS15840 at 284.198 kb on - strand, within HMPREF1078_RS15840 at 284.209 kb on + strand at 284.248 kb on + strand at 284.248 kb on + strand at 284.249 kb on - strand at 284.249 kb on - strand at 284.249 kb on - strand at 284.467 kb on + strand at 284.467 kb on + strand at 284.467 kb on + strand at 284.468 kb on - strand at 284.485 kb on + strand at 284.499 kb on + strand at 284.499 kb on + strand at 284.499 kb on + strand at 284.499 kb on + strand at 284.499 kb on + strand at 284.499 kb on + strand at 284.500 kb on - strand at 284.503 kb on + strand at 284.516 kb on - strand at 284.521 kb on + strand at 284.522 kb on - strand at 284.545 kb on + strand at 284.545 kb on + strand at 284.546 kb on - strand at 284.546 kb on - strand at 284.546 kb on - strand at 284.657 kb on + strand, within HMPREF1078_RS15845 at 284.701 kb on + strand, within HMPREF1078_RS15845 at 284.701 kb on + strand, within HMPREF1078_RS15845 at 284.703 kb on + strand, within HMPREF1078_RS15845 at 284.704 kb on - strand, within HMPREF1078_RS15845 at 284.704 kb on - strand, within HMPREF1078_RS15845 at 284.744 kb on - strand, within HMPREF1078_RS15845 at 284.811 kb on + strand, within HMPREF1078_RS15845 at 284.812 kb on - strand, within HMPREF1078_RS15845 at 285.136 kb on + strand, within HMPREF1078_RS15845 at 285.136 kb on + strand, within HMPREF1078_RS15845 at 285.137 kb on - strand, within HMPREF1078_RS15845 at 285.137 kb on - strand, within HMPREF1078_RS15845 at 285.174 kb on - strand, within HMPREF1078_RS15845 at 285.266 kb on + strand at 285.280 kb on + strand at 285.355 kb on + strand at 285.356 kb on - strand at 285.356 kb on - strand at 285.387 kb on + strand, within HMPREF1078_RS15850 at 285.438 kb on + strand, within HMPREF1078_RS15850 at 285.438 kb on + strand, within HMPREF1078_RS15850 at 285.452 kb on + strand, within HMPREF1078_RS15850 at 285.452 kb on + strand, within HMPREF1078_RS15850 at 285.454 kb on + strand, within HMPREF1078_RS15850 at 285.455 kb on - strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.459 kb on + strand, within HMPREF1078_RS15850 at 285.460 kb on - strand, within HMPREF1078_RS15850 at 285.466 kb on + strand, within HMPREF1078_RS15850 at 285.466 kb on + strand, within HMPREF1078_RS15850 at 285.497 kb on + strand, within HMPREF1078_RS15850 at 285.518 kb on - strand, within HMPREF1078_RS15850 at 285.519 kb on + strand, within HMPREF1078_RS15850 at 285.519 kb on + strand, within HMPREF1078_RS15850 at 285.520 kb on - strand, within HMPREF1078_RS15850 at 285.520 kb on - strand, within HMPREF1078_RS15850 at 285.520 kb on - strand, within HMPREF1078_RS15850 at 285.523 kb on + strand, within HMPREF1078_RS15850 at 285.524 kb on - strand, within HMPREF1078_RS15850 at 285.533 kb on - strand at 285.533 kb on - strand at 285.539 kb on - strand at 285.539 kb on - strand at 285.557 kb on + strand at 285.557 kb on + strand at 285.732 kb on + strand at 285.755 kb on + strand, within HMPREF1078_RS15855 at 285.756 kb on - strand, within HMPREF1078_RS15855 at 285.756 kb on - strand, within HMPREF1078_RS15855 at 285.758 kb on - strand, within HMPREF1078_RS15855 at 285.800 kb on - strand, within HMPREF1078_RS15855 at 285.811 kb on + strand, within HMPREF1078_RS15855 at 285.812 kb on - strand, within HMPREF1078_RS15855 at 285.820 kb on + strand, within HMPREF1078_RS15855 at 285.821 kb on - strand, within HMPREF1078_RS15855 at 285.823 kb on + strand, within HMPREF1078_RS15855 at 285.859 kb on + strand, within HMPREF1078_RS15855 at 285.859 kb on + strand, within HMPREF1078_RS15855 at 285.902 kb on + strand, within HMPREF1078_RS15855 at 285.977 kb on - strand, within HMPREF1078_RS15855 at 285.977 kb on - strand, within HMPREF1078_RS15855 at 285.977 kb on - strand, within HMPREF1078_RS15855 at 285.982 kb on - strand, within HMPREF1078_RS15855 at 286.093 kb on - strand, within HMPREF1078_RS15855 at 286.098 kb on - strand, within HMPREF1078_RS15855 at 286.185 kb on + strand, within HMPREF1078_RS15855
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mg/mL (C) remove 283,535 + HMPREF1078_RS15840 0.18 -0.5 283,535 + HMPREF1078_RS15840 0.18 -1.3 283,536 - HMPREF1078_RS15840 0.18 -0.7 283,536 - HMPREF1078_RS15840 0.18 -0.7 283,559 - HMPREF1078_RS15840 0.20 +0.0 283,630 + HMPREF1078_RS15840 0.28 +0.6 283,630 + HMPREF1078_RS15840 0.28 -1.1 283,634 + HMPREF1078_RS15840 0.28 -0.5 283,638 + HMPREF1078_RS15840 0.29 +0.2 283,638 + HMPREF1078_RS15840 0.29 +0.0 283,682 + HMPREF1078_RS15840 0.34 +1.2 283,683 - HMPREF1078_RS15840 0.34 -1.0 283,698 + HMPREF1078_RS15840 0.35 +0.9 283,698 + HMPREF1078_RS15840 0.35 -0.8 283,699 - HMPREF1078_RS15840 0.35 -0.0 283,770 - HMPREF1078_RS15840 0.43 -0.3 283,770 - HMPREF1078_RS15840 0.43 -0.2 283,778 - HMPREF1078_RS15840 0.44 -1.0 283,781 + HMPREF1078_RS15840 0.44 -0.2 283,782 - HMPREF1078_RS15840 0.44 -0.9 283,782 - HMPREF1078_RS15840 0.44 -0.4 283,818 + HMPREF1078_RS15840 0.48 -0.0 283,819 - HMPREF1078_RS15840 0.48 -0.8 283,819 - HMPREF1078_RS15840 0.48 -1.0 283,852 + HMPREF1078_RS15840 0.52 -0.9 284,008 + HMPREF1078_RS15840 0.69 -0.4 284,008 + HMPREF1078_RS15840 0.69 +1.2 284,037 + HMPREF1078_RS15840 0.72 -0.3 284,038 - HMPREF1078_RS15840 0.72 -0.6 284,038 - HMPREF1078_RS15840 0.72 +0.0 284,039 + HMPREF1078_RS15840 0.72 -0.2 284,039 + HMPREF1078_RS15840 0.72 -0.0 284,040 - HMPREF1078_RS15840 0.72 -0.6 284,044 - HMPREF1078_RS15840 0.73 -0.6 284,044 - HMPREF1078_RS15840 0.73 +0.4 284,056 + HMPREF1078_RS15840 0.74 +0.5 284,179 + HMPREF1078_RS15840 0.87 +0.9 284,198 - HMPREF1078_RS15840 0.89 -0.4 284,209 + -0.3 284,248 + +0.4 284,248 + -0.6 284,249 - +0.3 284,249 - +0.0 284,249 - -0.5 284,467 + -0.2 284,467 + +0.4 284,467 + +0.1 284,468 - +0.6 284,485 + +0.3 284,499 + +1.7 284,499 + -0.8 284,499 + +0.7 284,499 + +0.2 284,499 + +0.7 284,499 + +0.1 284,500 - -2.2 284,503 + +1.4 284,516 - -1.3 284,521 + -0.2 284,522 - +1.0 284,545 + -2.7 284,545 + -1.5 284,546 - -0.3 284,546 - -2.7 284,546 - -1.3 284,657 + HMPREF1078_RS15845 0.17 -3.1 284,701 + HMPREF1078_RS15845 0.23 -1.8 284,701 + HMPREF1078_RS15845 0.23 -2.4 284,703 + HMPREF1078_RS15845 0.23 -3.1 284,704 - HMPREF1078_RS15845 0.23 -1.9 284,704 - HMPREF1078_RS15845 0.23 -3.0 284,744 - HMPREF1078_RS15845 0.29 +0.2 284,811 + HMPREF1078_RS15845 0.38 -2.8 284,812 - HMPREF1078_RS15845 0.38 -1.8 285,136 + HMPREF1078_RS15845 0.82 -2.9 285,136 + HMPREF1078_RS15845 0.82 -1.0 285,137 - HMPREF1078_RS15845 0.82 -4.5 285,137 - HMPREF1078_RS15845 0.82 -1.9 285,174 - HMPREF1078_RS15845 0.87 -1.8 285,266 + -1.3 285,280 + +0.3 285,355 + -0.5 285,356 - -0.2 285,356 - +0.3 285,387 + HMPREF1078_RS15850 0.21 -0.6 285,438 + HMPREF1078_RS15850 0.46 -2.2 285,438 + HMPREF1078_RS15850 0.46 -1.1 285,452 + HMPREF1078_RS15850 0.53 +0.2 285,452 + HMPREF1078_RS15850 0.53 -2.4 285,454 + HMPREF1078_RS15850 0.54 -0.5 285,455 - HMPREF1078_RS15850 0.54 -0.7 285,456 + HMPREF1078_RS15850 0.55 -1.0 285,456 + HMPREF1078_RS15850 0.55 +0.3 285,456 + HMPREF1078_RS15850 0.55 -0.5 285,456 + HMPREF1078_RS15850 0.55 -1.3 285,456 + HMPREF1078_RS15850 0.55 -0.0 285,456 + HMPREF1078_RS15850 0.55 -0.4 285,456 + HMPREF1078_RS15850 0.55 -0.1 285,456 + HMPREF1078_RS15850 0.55 -0.4 285,457 - HMPREF1078_RS15850 0.55 -0.3 285,457 - HMPREF1078_RS15850 0.55 +0.0 285,457 - HMPREF1078_RS15850 0.55 +0.4 285,457 - HMPREF1078_RS15850 0.55 -1.0 285,457 - HMPREF1078_RS15850 0.55 -0.7 285,457 - HMPREF1078_RS15850 0.55 -0.6 285,457 - HMPREF1078_RS15850 0.55 -2.4 285,459 + HMPREF1078_RS15850 0.56 -1.3 285,460 - HMPREF1078_RS15850 0.57 +0.3 285,466 + HMPREF1078_RS15850 0.60 -0.2 285,466 + HMPREF1078_RS15850 0.60 -0.2 285,497 + HMPREF1078_RS15850 0.75 +0.4 285,518 - HMPREF1078_RS15850 0.85 -0.5 285,519 + HMPREF1078_RS15850 0.86 +0.3 285,519 + HMPREF1078_RS15850 0.86 +1.3 285,520 - HMPREF1078_RS15850 0.86 -1.0 285,520 - HMPREF1078_RS15850 0.86 -1.8 285,520 - HMPREF1078_RS15850 0.86 -0.8 285,523 + HMPREF1078_RS15850 0.88 -0.7 285,524 - HMPREF1078_RS15850 0.88 -0.8 285,533 - -0.4 285,533 - +0.1 285,539 - -1.1 285,539 - -2.8 285,557 + -2.1 285,557 + -2.2 285,732 + -0.3 285,755 + HMPREF1078_RS15855 0.10 +0.3 285,756 - HMPREF1078_RS15855 0.10 -2.7 285,756 - HMPREF1078_RS15855 0.10 -0.6 285,758 - HMPREF1078_RS15855 0.11 +0.9 285,800 - HMPREF1078_RS15855 0.13 -1.0 285,811 + HMPREF1078_RS15855 0.13 -0.1 285,812 - HMPREF1078_RS15855 0.13 -2.0 285,820 + HMPREF1078_RS15855 0.14 -1.3 285,821 - HMPREF1078_RS15855 0.14 -0.8 285,823 + HMPREF1078_RS15855 0.14 -0.2 285,859 + HMPREF1078_RS15855 0.16 -0.9 285,859 + HMPREF1078_RS15855 0.16 -0.7 285,902 + HMPREF1078_RS15855 0.18 -1.4 285,977 - HMPREF1078_RS15855 0.21 -0.5 285,977 - HMPREF1078_RS15855 0.21 -2.1 285,977 - HMPREF1078_RS15855 0.21 -1.1 285,982 - HMPREF1078_RS15855 0.22 -0.1 286,093 - HMPREF1078_RS15855 0.27 -1.1 286,098 - HMPREF1078_RS15855 0.27 -1.7 286,185 + HMPREF1078_RS15855 0.32 -0.3
Or see this region's nucleotide sequence