Experiment: Beta-Lactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11700 and HMPREF1078_RS11705 are separated by 55 nucleotides HMPREF1078_RS11705 and HMPREF1078_RS11710 are separated by 141 nucleotides
HMPREF1078_RS11700: HMPREF1078_RS11700 - outer membrane beta-barrel family protein, at 285,610 to 288,075
_RS11700
HMPREF1078_RS11705: HMPREF1078_RS11705 - sugar phosphate isomerase/epimerase family protein, at 288,131 to 289,120
_RS11705
HMPREF1078_RS11710: HMPREF1078_RS11710 - hypothetical protein, at 289,262 to 290,212
_RS11710
Position (kb) 288
289
290 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 287.140 kb on + strand, within HMPREF1078_RS11700 at 287.219 kb on - strand, within HMPREF1078_RS11700 at 287.244 kb on + strand, within HMPREF1078_RS11700 at 287.251 kb on + strand, within HMPREF1078_RS11700 at 287.252 kb on - strand, within HMPREF1078_RS11700 at 287.287 kb on + strand, within HMPREF1078_RS11700 at 287.287 kb on + strand, within HMPREF1078_RS11700 at 287.443 kb on - strand, within HMPREF1078_RS11700 at 287.447 kb on + strand, within HMPREF1078_RS11700 at 287.448 kb on - strand, within HMPREF1078_RS11700 at 287.523 kb on - strand, within HMPREF1078_RS11700 at 287.527 kb on + strand, within HMPREF1078_RS11700 at 287.527 kb on + strand, within HMPREF1078_RS11700 at 287.528 kb on - strand, within HMPREF1078_RS11700 at 287.595 kb on - strand, within HMPREF1078_RS11700 at 287.625 kb on - strand, within HMPREF1078_RS11700 at 287.636 kb on - strand, within HMPREF1078_RS11700 at 287.645 kb on + strand, within HMPREF1078_RS11700 at 287.723 kb on + strand, within HMPREF1078_RS11700 at 287.784 kb on + strand, within HMPREF1078_RS11700 at 287.874 kb on - strand at 287.874 kb on - strand at 287.879 kb on + strand at 287.880 kb on - strand at 287.880 kb on - strand at 287.880 kb on - strand at 287.883 kb on + strand at 287.883 kb on + strand at 287.929 kb on - strand at 288.002 kb on - strand at 288.061 kb on + strand at 288.061 kb on + strand at 288.062 kb on - strand at 288.062 kb on - strand at 288.062 kb on - strand at 288.210 kb on - strand at 288.235 kb on + strand, within HMPREF1078_RS11705 at 288.323 kb on + strand, within HMPREF1078_RS11705 at 288.412 kb on - strand, within HMPREF1078_RS11705 at 288.467 kb on + strand, within HMPREF1078_RS11705 at 288.507 kb on + strand, within HMPREF1078_RS11705 at 288.532 kb on - strand, within HMPREF1078_RS11705 at 288.554 kb on - strand, within HMPREF1078_RS11705 at 288.617 kb on + strand, within HMPREF1078_RS11705 at 288.618 kb on - strand, within HMPREF1078_RS11705 at 288.670 kb on - strand, within HMPREF1078_RS11705 at 288.670 kb on - strand, within HMPREF1078_RS11705 at 288.796 kb on + strand, within HMPREF1078_RS11705 at 288.847 kb on + strand, within HMPREF1078_RS11705 at 288.848 kb on - strand, within HMPREF1078_RS11705 at 288.850 kb on - strand, within HMPREF1078_RS11705 at 288.850 kb on - strand, within HMPREF1078_RS11705 at 288.850 kb on - strand, within HMPREF1078_RS11705 at 288.887 kb on - strand, within HMPREF1078_RS11705 at 288.893 kb on + strand, within HMPREF1078_RS11705 at 288.893 kb on + strand, within HMPREF1078_RS11705 at 288.893 kb on + strand, within HMPREF1078_RS11705 at 288.894 kb on - strand, within HMPREF1078_RS11705 at 288.942 kb on + strand, within HMPREF1078_RS11705 at 288.943 kb on - strand, within HMPREF1078_RS11705 at 288.946 kb on + strand, within HMPREF1078_RS11705 at 288.975 kb on + strand, within HMPREF1078_RS11705 at 288.976 kb on - strand, within HMPREF1078_RS11705 at 289.063 kb on + strand at 289.064 kb on - strand at 289.097 kb on - strand at 289.100 kb on + strand at 289.145 kb on + strand at 289.145 kb on + strand at 289.220 kb on - strand at 289.233 kb on - strand at 289.240 kb on + strand at 289.261 kb on + strand at 289.261 kb on + strand at 289.296 kb on + strand at 289.301 kb on + strand at 289.302 kb on - strand at 289.302 kb on - strand at 289.302 kb on - strand at 289.302 kb on - strand at 289.302 kb on - strand at 289.302 kb on - strand at 289.395 kb on + strand, within HMPREF1078_RS11710 at 289.506 kb on - strand, within HMPREF1078_RS11710 at 289.506 kb on - strand, within HMPREF1078_RS11710 at 289.510 kb on - strand, within HMPREF1078_RS11710 at 289.510 kb on - strand, within HMPREF1078_RS11710 at 289.510 kb on - strand, within HMPREF1078_RS11710 at 289.529 kb on - strand, within HMPREF1078_RS11710 at 289.599 kb on + strand, within HMPREF1078_RS11710 at 289.599 kb on + strand, within HMPREF1078_RS11710 at 289.599 kb on + strand, within HMPREF1078_RS11710 at 289.599 kb on + strand, within HMPREF1078_RS11710 at 289.600 kb on - strand, within HMPREF1078_RS11710 at 289.600 kb on - strand, within HMPREF1078_RS11710 at 289.600 kb on - strand, within HMPREF1078_RS11710 at 289.601 kb on + strand, within HMPREF1078_RS11710 at 289.601 kb on + strand, within HMPREF1078_RS11710 at 289.601 kb on + strand, within HMPREF1078_RS11710 at 289.602 kb on - strand, within HMPREF1078_RS11710 at 289.635 kb on - strand, within HMPREF1078_RS11710 at 289.665 kb on + strand, within HMPREF1078_RS11710 at 289.669 kb on - strand, within HMPREF1078_RS11710 at 289.723 kb on - strand, within HMPREF1078_RS11710 at 289.778 kb on - strand, within HMPREF1078_RS11710 at 289.824 kb on + strand, within HMPREF1078_RS11710 at 289.922 kb on + strand, within HMPREF1078_RS11710 at 289.924 kb on + strand, within HMPREF1078_RS11710 at 289.925 kb on - strand, within HMPREF1078_RS11710 at 289.925 kb on - strand, within HMPREF1078_RS11710 at 290.004 kb on + strand, within HMPREF1078_RS11710 at 290.101 kb on + strand, within HMPREF1078_RS11710 at 290.114 kb on + strand, within HMPREF1078_RS11710
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mg/mL (C) remove 287,140 + HMPREF1078_RS11700 0.62 +0.4 287,219 - HMPREF1078_RS11700 0.65 -0.1 287,244 + HMPREF1078_RS11700 0.66 +0.5 287,251 + HMPREF1078_RS11700 0.67 -0.8 287,252 - HMPREF1078_RS11700 0.67 -1.9 287,287 + HMPREF1078_RS11700 0.68 -0.3 287,287 + HMPREF1078_RS11700 0.68 -0.0 287,443 - HMPREF1078_RS11700 0.74 -1.2 287,447 + HMPREF1078_RS11700 0.74 +1.0 287,448 - HMPREF1078_RS11700 0.75 +0.1 287,523 - HMPREF1078_RS11700 0.78 -0.3 287,527 + HMPREF1078_RS11700 0.78 +0.2 287,527 + HMPREF1078_RS11700 0.78 +0.3 287,528 - HMPREF1078_RS11700 0.78 -0.6 287,595 - HMPREF1078_RS11700 0.80 -0.2 287,625 - HMPREF1078_RS11700 0.82 -0.6 287,636 - HMPREF1078_RS11700 0.82 -0.4 287,645 + HMPREF1078_RS11700 0.83 -0.7 287,723 + HMPREF1078_RS11700 0.86 -0.6 287,784 + HMPREF1078_RS11700 0.88 +0.4 287,874 - -0.8 287,874 - -1.4 287,879 + -0.3 287,880 - -0.1 287,880 - -0.3 287,880 - -1.3 287,883 + +0.7 287,883 + -0.3 287,929 - +0.3 288,002 - -0.8 288,061 + +2.1 288,061 + +0.7 288,062 - -1.0 288,062 - +0.1 288,062 - -2.7 288,210 - -1.5 288,235 + HMPREF1078_RS11705 0.11 -0.3 288,323 + HMPREF1078_RS11705 0.19 -0.1 288,412 - HMPREF1078_RS11705 0.28 -0.1 288,467 + HMPREF1078_RS11705 0.34 -1.7 288,507 + HMPREF1078_RS11705 0.38 -0.1 288,532 - HMPREF1078_RS11705 0.41 +0.0 288,554 - HMPREF1078_RS11705 0.43 +0.1 288,617 + HMPREF1078_RS11705 0.49 +1.2 288,618 - HMPREF1078_RS11705 0.49 +0.9 288,670 - HMPREF1078_RS11705 0.54 -2.1 288,670 - HMPREF1078_RS11705 0.54 -0.2 288,796 + HMPREF1078_RS11705 0.67 -0.9 288,847 + HMPREF1078_RS11705 0.72 -1.1 288,848 - HMPREF1078_RS11705 0.72 +0.6 288,850 - HMPREF1078_RS11705 0.73 -0.4 288,850 - HMPREF1078_RS11705 0.73 -0.5 288,850 - HMPREF1078_RS11705 0.73 -0.2 288,887 - HMPREF1078_RS11705 0.76 +0.3 288,893 + HMPREF1078_RS11705 0.77 -1.0 288,893 + HMPREF1078_RS11705 0.77 -0.3 288,893 + HMPREF1078_RS11705 0.77 -0.1 288,894 - HMPREF1078_RS11705 0.77 +1.2 288,942 + HMPREF1078_RS11705 0.82 -0.4 288,943 - HMPREF1078_RS11705 0.82 +0.9 288,946 + HMPREF1078_RS11705 0.82 -0.6 288,975 + HMPREF1078_RS11705 0.85 -1.3 288,976 - HMPREF1078_RS11705 0.85 -1.2 289,063 + +0.5 289,064 - -0.3 289,097 - -3.2 289,100 + +0.0 289,145 + +0.2 289,145 + -1.0 289,220 - -2.3 289,233 - -0.4 289,240 + +0.3 289,261 + -0.1 289,261 + +0.5 289,296 + -0.3 289,301 + -0.3 289,302 - -0.4 289,302 - +0.7 289,302 - +0.6 289,302 - -0.5 289,302 - -1.1 289,302 - +0.8 289,395 + HMPREF1078_RS11710 0.14 +0.8 289,506 - HMPREF1078_RS11710 0.26 +0.4 289,506 - HMPREF1078_RS11710 0.26 -0.3 289,510 - HMPREF1078_RS11710 0.26 +3.3 289,510 - HMPREF1078_RS11710 0.26 -0.7 289,510 - HMPREF1078_RS11710 0.26 +0.8 289,529 - HMPREF1078_RS11710 0.28 -0.3 289,599 + HMPREF1078_RS11710 0.35 -0.6 289,599 + HMPREF1078_RS11710 0.35 +0.1 289,599 + HMPREF1078_RS11710 0.35 +1.3 289,599 + HMPREF1078_RS11710 0.35 +0.1 289,600 - HMPREF1078_RS11710 0.36 -1.2 289,600 - HMPREF1078_RS11710 0.36 -1.5 289,600 - HMPREF1078_RS11710 0.36 -1.7 289,601 + HMPREF1078_RS11710 0.36 -0.7 289,601 + HMPREF1078_RS11710 0.36 +1.3 289,601 + HMPREF1078_RS11710 0.36 +2.3 289,602 - HMPREF1078_RS11710 0.36 -0.1 289,635 - HMPREF1078_RS11710 0.39 +0.3 289,665 + HMPREF1078_RS11710 0.42 +0.5 289,669 - HMPREF1078_RS11710 0.43 +0.5 289,723 - HMPREF1078_RS11710 0.48 -0.3 289,778 - HMPREF1078_RS11710 0.54 -0.4 289,824 + HMPREF1078_RS11710 0.59 -1.0 289,922 + HMPREF1078_RS11710 0.69 -0.1 289,924 + HMPREF1078_RS11710 0.70 -0.1 289,925 - HMPREF1078_RS11710 0.70 -0.7 289,925 - HMPREF1078_RS11710 0.70 -0.8 290,004 + HMPREF1078_RS11710 0.78 +1.1 290,101 + HMPREF1078_RS11710 0.88 +0.7 290,114 + HMPREF1078_RS11710 0.90 +0.1
Or see this region's nucleotide sequence