Experiment: Beta-Lactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06640 and HMPREF1078_RS06645 are separated by 548 nucleotides HMPREF1078_RS06645 and HMPREF1078_RS06650 are separated by 73 nucleotides
HMPREF1078_RS06640: HMPREF1078_RS06640 - DUF417 family protein, at 716,932 to 717,519
_RS06640
HMPREF1078_RS06645: HMPREF1078_RS06645 - RNA polymerase sigma-70 factor, at 718,068 to 718,655
_RS06645
HMPREF1078_RS06650: HMPREF1078_RS06650 - FecR family protein, at 718,729 to 719,706
_RS06650
Position (kb) 718
719 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 717.079 kb on + strand, within HMPREF1078_RS06640 at 717.079 kb on + strand, within HMPREF1078_RS06640 at 717.080 kb on - strand, within HMPREF1078_RS06640 at 717.080 kb on - strand, within HMPREF1078_RS06640 at 717.126 kb on + strand, within HMPREF1078_RS06640 at 717.127 kb on - strand, within HMPREF1078_RS06640 at 717.127 kb on - strand, within HMPREF1078_RS06640 at 717.129 kb on + strand, within HMPREF1078_RS06640 at 717.145 kb on + strand, within HMPREF1078_RS06640 at 717.145 kb on + strand, within HMPREF1078_RS06640 at 717.146 kb on - strand, within HMPREF1078_RS06640 at 717.160 kb on - strand, within HMPREF1078_RS06640 at 717.172 kb on - strand, within HMPREF1078_RS06640 at 717.172 kb on - strand, within HMPREF1078_RS06640 at 717.234 kb on - strand, within HMPREF1078_RS06640 at 717.294 kb on + strand, within HMPREF1078_RS06640 at 717.297 kb on - strand, within HMPREF1078_RS06640 at 717.297 kb on - strand, within HMPREF1078_RS06640 at 717.303 kb on + strand, within HMPREF1078_RS06640 at 717.324 kb on + strand, within HMPREF1078_RS06640 at 717.326 kb on + strand, within HMPREF1078_RS06640 at 717.332 kb on + strand, within HMPREF1078_RS06640 at 717.339 kb on + strand, within HMPREF1078_RS06640 at 717.389 kb on + strand, within HMPREF1078_RS06640 at 717.413 kb on - strand, within HMPREF1078_RS06640 at 717.448 kb on - strand, within HMPREF1078_RS06640 at 717.492 kb on - strand at 717.496 kb on + strand at 717.502 kb on - strand at 717.502 kb on - strand at 717.502 kb on - strand at 717.505 kb on + strand at 717.534 kb on - strand at 717.535 kb on + strand at 717.535 kb on + strand at 717.536 kb on - strand at 717.536 kb on - strand at 717.547 kb on - strand at 717.549 kb on - strand at 717.605 kb on + strand at 717.605 kb on - strand at 717.606 kb on - strand at 717.606 kb on - strand at 717.606 kb on - strand at 717.632 kb on - strand at 717.633 kb on + strand at 717.634 kb on - strand at 717.651 kb on - strand at 717.651 kb on - strand at 717.651 kb on - strand at 717.653 kb on - strand at 717.653 kb on - strand at 717.660 kb on + strand at 717.660 kb on + strand at 717.660 kb on + strand at 717.660 kb on + strand at 717.661 kb on - strand at 717.705 kb on - strand at 717.705 kb on - strand at 717.705 kb on - strand at 717.711 kb on - strand at 717.711 kb on - strand at 717.711 kb on - strand at 717.713 kb on + strand at 717.714 kb on - strand at 717.714 kb on - strand at 717.714 kb on - strand at 717.714 kb on - strand at 717.714 kb on - strand at 717.716 kb on + strand at 717.716 kb on + strand at 717.716 kb on + strand at 717.716 kb on + strand at 717.717 kb on - strand at 717.717 kb on - strand at 717.743 kb on + strand at 717.780 kb on - strand at 717.783 kb on + strand at 717.783 kb on + strand at 717.783 kb on + strand at 717.783 kb on + strand at 717.784 kb on - strand at 717.784 kb on - strand at 717.792 kb on - strand at 717.798 kb on + strand at 717.825 kb on - strand at 717.895 kb on - strand at 717.905 kb on - strand at 717.916 kb on - strand at 717.926 kb on + strand at 717.983 kb on + strand at 717.983 kb on + strand at 717.984 kb on - strand at 717.984 kb on - strand at 717.992 kb on + strand at 718.001 kb on - strand at 718.028 kb on + strand at 718.028 kb on + strand at 718.028 kb on + strand at 718.029 kb on - strand at 718.029 kb on - strand at 718.029 kb on - strand at 718.063 kb on - strand at 718.063 kb on - strand at 718.063 kb on - strand at 718.063 kb on - strand at 718.067 kb on + strand at 718.068 kb on - strand at 718.068 kb on - strand at 718.249 kb on + strand, within HMPREF1078_RS06645 at 718.250 kb on - strand, within HMPREF1078_RS06645 at 718.263 kb on - strand, within HMPREF1078_RS06645 at 718.263 kb on - strand, within HMPREF1078_RS06645 at 718.295 kb on + strand, within HMPREF1078_RS06645 at 718.313 kb on + strand, within HMPREF1078_RS06645 at 718.412 kb on + strand, within HMPREF1078_RS06645 at 718.413 kb on - strand, within HMPREF1078_RS06645 at 718.413 kb on - strand, within HMPREF1078_RS06645 at 718.447 kb on + strand, within HMPREF1078_RS06645 at 718.516 kb on + strand, within HMPREF1078_RS06645 at 718.541 kb on + strand, within HMPREF1078_RS06645 at 718.575 kb on - strand, within HMPREF1078_RS06645 at 718.575 kb on - strand, within HMPREF1078_RS06645 at 718.628 kb on + strand at 718.631 kb on - strand at 718.679 kb on + strand at 718.679 kb on + strand at 718.715 kb on + strand at 718.716 kb on - strand at 718.742 kb on + strand at 718.749 kb on - strand at 718.749 kb on - strand at 718.765 kb on - strand at 718.765 kb on - strand at 718.909 kb on + strand, within HMPREF1078_RS06650 at 718.909 kb on + strand, within HMPREF1078_RS06650 at 718.909 kb on + strand, within HMPREF1078_RS06650 at 718.910 kb on - strand, within HMPREF1078_RS06650 at 718.942 kb on - strand, within HMPREF1078_RS06650 at 718.968 kb on - strand, within HMPREF1078_RS06650 at 718.968 kb on - strand, within HMPREF1078_RS06650 at 718.969 kb on + strand, within HMPREF1078_RS06650 at 718.970 kb on - strand, within HMPREF1078_RS06650 at 718.981 kb on - strand, within HMPREF1078_RS06650 at 719.015 kb on + strand, within HMPREF1078_RS06650 at 719.055 kb on - strand, within HMPREF1078_RS06650 at 719.142 kb on + strand, within HMPREF1078_RS06650 at 719.172 kb on + strand, within HMPREF1078_RS06650 at 719.173 kb on - strand, within HMPREF1078_RS06650 at 719.273 kb on + strand, within HMPREF1078_RS06650 at 719.294 kb on + strand, within HMPREF1078_RS06650 at 719.295 kb on - strand, within HMPREF1078_RS06650 at 719.407 kb on + strand, within HMPREF1078_RS06650 at 719.512 kb on - strand, within HMPREF1078_RS06650 at 719.512 kb on - strand, within HMPREF1078_RS06650 at 719.550 kb on - strand, within HMPREF1078_RS06650 at 719.553 kb on + strand, within HMPREF1078_RS06650 at 719.553 kb on + strand, within HMPREF1078_RS06650 at 719.553 kb on + strand, within HMPREF1078_RS06650 at 719.555 kb on + strand, within HMPREF1078_RS06650 at 719.610 kb on + strand at 719.628 kb on - strand at 719.633 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mg/mL (C) remove 717,079 + HMPREF1078_RS06640 0.25 -1.1 717,079 + HMPREF1078_RS06640 0.25 +1.1 717,080 - HMPREF1078_RS06640 0.25 -0.1 717,080 - HMPREF1078_RS06640 0.25 +1.3 717,126 + HMPREF1078_RS06640 0.33 -0.3 717,127 - HMPREF1078_RS06640 0.33 -0.2 717,127 - HMPREF1078_RS06640 0.33 -0.3 717,129 + HMPREF1078_RS06640 0.34 -3.4 717,145 + HMPREF1078_RS06640 0.36 +0.0 717,145 + HMPREF1078_RS06640 0.36 -0.5 717,146 - HMPREF1078_RS06640 0.36 +0.2 717,160 - HMPREF1078_RS06640 0.39 -0.4 717,172 - HMPREF1078_RS06640 0.41 +0.2 717,172 - HMPREF1078_RS06640 0.41 +0.5 717,234 - HMPREF1078_RS06640 0.51 +0.5 717,294 + HMPREF1078_RS06640 0.62 +0.5 717,297 - HMPREF1078_RS06640 0.62 +0.8 717,297 - HMPREF1078_RS06640 0.62 +0.3 717,303 + HMPREF1078_RS06640 0.63 -1.6 717,324 + HMPREF1078_RS06640 0.67 -0.5 717,326 + HMPREF1078_RS06640 0.67 -1.0 717,332 + HMPREF1078_RS06640 0.68 +0.1 717,339 + HMPREF1078_RS06640 0.69 +0.5 717,389 + HMPREF1078_RS06640 0.78 -0.4 717,413 - HMPREF1078_RS06640 0.82 +0.2 717,448 - HMPREF1078_RS06640 0.88 +0.3 717,492 - +0.4 717,496 + +0.7 717,502 - +0.1 717,502 - +1.3 717,502 - -0.2 717,505 + +0.1 717,534 - +1.9 717,535 + -0.2 717,535 + +0.4 717,536 - -0.0 717,536 - -0.7 717,547 - -0.8 717,549 - -0.3 717,605 + -1.4 717,605 - +0.6 717,606 - +2.3 717,606 - +0.5 717,606 - +1.0 717,632 - +0.8 717,633 + -0.6 717,634 - -0.3 717,651 - +2.6 717,651 - +0.3 717,651 - +1.3 717,653 - +0.3 717,653 - +0.2 717,660 + +0.3 717,660 + -1.6 717,660 + -0.1 717,660 + +0.1 717,661 - -0.1 717,705 - +0.3 717,705 - +0.2 717,705 - +0.8 717,711 - +0.3 717,711 - -0.2 717,711 - -1.1 717,713 + -0.2 717,714 - +0.2 717,714 - -0.5 717,714 - +0.4 717,714 - -0.1 717,714 - +0.7 717,716 + +0.8 717,716 + -0.9 717,716 + +0.1 717,716 + +0.0 717,717 - +0.2 717,717 - -0.2 717,743 + -0.0 717,780 - +0.6 717,783 + +1.5 717,783 + +0.0 717,783 + -0.8 717,783 + +0.6 717,784 - -0.4 717,784 - -0.9 717,792 - +0.1 717,798 + -1.4 717,825 - -0.3 717,895 - -0.2 717,905 - +0.1 717,916 - +0.8 717,926 + -0.3 717,983 + -0.6 717,983 + -0.3 717,984 - -0.6 717,984 - +0.2 717,992 + +0.2 718,001 - +0.1 718,028 + -0.7 718,028 + -0.2 718,028 + +0.8 718,029 - -0.8 718,029 - +0.3 718,029 - +0.0 718,063 - +0.3 718,063 - +0.0 718,063 - +0.3 718,063 - -1.4 718,067 + +0.8 718,068 - -1.1 718,068 - -1.1 718,249 + HMPREF1078_RS06645 0.31 -0.4 718,250 - HMPREF1078_RS06645 0.31 +0.3 718,263 - HMPREF1078_RS06645 0.33 -0.5 718,263 - HMPREF1078_RS06645 0.33 -0.6 718,295 + HMPREF1078_RS06645 0.39 +0.3 718,313 + HMPREF1078_RS06645 0.42 -0.2 718,412 + HMPREF1078_RS06645 0.59 -0.2 718,413 - HMPREF1078_RS06645 0.59 +1.3 718,413 - HMPREF1078_RS06645 0.59 -0.4 718,447 + HMPREF1078_RS06645 0.64 -1.8 718,516 + HMPREF1078_RS06645 0.76 +0.4 718,541 + HMPREF1078_RS06645 0.80 -1.8 718,575 - HMPREF1078_RS06645 0.86 +1.0 718,575 - HMPREF1078_RS06645 0.86 +0.9 718,628 + +0.8 718,631 - -0.8 718,679 + +0.9 718,679 + -1.6 718,715 + -0.9 718,716 - -0.4 718,742 + -1.0 718,749 - +1.5 718,749 - -0.7 718,765 - -1.0 718,765 - -0.3 718,909 + HMPREF1078_RS06650 0.18 +0.4 718,909 + HMPREF1078_RS06650 0.18 +1.7 718,909 + HMPREF1078_RS06650 0.18 -0.4 718,910 - HMPREF1078_RS06650 0.19 +0.4 718,942 - HMPREF1078_RS06650 0.22 +1.4 718,968 - HMPREF1078_RS06650 0.24 +0.3 718,968 - HMPREF1078_RS06650 0.24 -1.0 718,969 + HMPREF1078_RS06650 0.25 -0.4 718,970 - HMPREF1078_RS06650 0.25 +0.2 718,981 - HMPREF1078_RS06650 0.26 +0.8 719,015 + HMPREF1078_RS06650 0.29 -0.0 719,055 - HMPREF1078_RS06650 0.33 +0.5 719,142 + HMPREF1078_RS06650 0.42 +0.5 719,172 + HMPREF1078_RS06650 0.45 -0.9 719,173 - HMPREF1078_RS06650 0.45 -0.8 719,273 + HMPREF1078_RS06650 0.56 +1.1 719,294 + HMPREF1078_RS06650 0.58 -0.9 719,295 - HMPREF1078_RS06650 0.58 -0.1 719,407 + HMPREF1078_RS06650 0.69 +0.4 719,512 - HMPREF1078_RS06650 0.80 +0.1 719,512 - HMPREF1078_RS06650 0.80 -0.3 719,550 - HMPREF1078_RS06650 0.84 +0.3 719,553 + HMPREF1078_RS06650 0.84 +0.3 719,553 + HMPREF1078_RS06650 0.84 -0.8 719,553 + HMPREF1078_RS06650 0.84 +0.1 719,555 + HMPREF1078_RS06650 0.84 -0.5 719,610 + -0.5 719,628 - +0.6 719,633 + -0.1
Or see this region's nucleotide sequence