Experiment: Beta-Lactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00865 and HMPREF1078_RS00870 are separated by 117 nucleotides HMPREF1078_RS00870 and HMPREF1078_RS00875 are separated by 62 nucleotides
HMPREF1078_RS00865: HMPREF1078_RS00865 - MG2 domain-containing protein, at 205,994 to 211,525
_RS00865
HMPREF1078_RS00870: HMPREF1078_RS00870 - GAF domain-containing protein, at 211,643 to 212,116
_RS00870
HMPREF1078_RS00875: HMPREF1078_RS00875 - MATE family efflux transporter, at 212,179 to 213,525
_RS00875
Position (kb) 211
212
213 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 210.672 kb on + strand, within HMPREF1078_RS00865 at 210.673 kb on - strand, within HMPREF1078_RS00865 at 210.673 kb on - strand, within HMPREF1078_RS00865 at 210.884 kb on + strand, within HMPREF1078_RS00865 at 210.886 kb on + strand, within HMPREF1078_RS00865 at 210.896 kb on + strand, within HMPREF1078_RS00865 at 210.896 kb on + strand, within HMPREF1078_RS00865 at 210.898 kb on + strand, within HMPREF1078_RS00865 at 210.898 kb on + strand, within HMPREF1078_RS00865 at 211.072 kb on + strand at 211.115 kb on - strand at 211.130 kb on + strand at 211.130 kb on + strand at 211.131 kb on - strand at 211.131 kb on - strand at 211.132 kb on + strand at 211.132 kb on + strand at 211.159 kb on + strand at 211.229 kb on + strand at 211.275 kb on + strand at 211.334 kb on + strand at 211.334 kb on + strand at 211.368 kb on - strand at 211.369 kb on + strand at 211.472 kb on + strand at 211.472 kb on + strand at 211.472 kb on + strand at 211.473 kb on - strand at 211.473 kb on - strand at 211.524 kb on - strand at 211.524 kb on - strand at 211.574 kb on + strand at 211.627 kb on - strand at 211.792 kb on + strand, within HMPREF1078_RS00870 at 211.820 kb on + strand, within HMPREF1078_RS00870 at 211.821 kb on - strand, within HMPREF1078_RS00870 at 211.869 kb on - strand, within HMPREF1078_RS00870 at 211.869 kb on - strand, within HMPREF1078_RS00870 at 211.869 kb on - strand, within HMPREF1078_RS00870 at 211.951 kb on - strand, within HMPREF1078_RS00870 at 212.071 kb on - strand at 212.071 kb on - strand at 212.073 kb on - strand at 212.073 kb on - strand at 212.128 kb on + strand at 212.130 kb on + strand at 212.131 kb on - strand at 212.144 kb on + strand at 212.167 kb on + strand at 212.242 kb on + strand at 212.243 kb on - strand at 212.243 kb on - strand at 212.243 kb on - strand at 212.243 kb on - strand at 212.285 kb on - strand at 212.301 kb on + strand at 212.302 kb on - strand at 212.303 kb on + strand at 212.303 kb on + strand at 212.304 kb on - strand at 212.308 kb on - strand at 212.446 kb on + strand, within HMPREF1078_RS00875 at 212.478 kb on - strand, within HMPREF1078_RS00875 at 212.492 kb on + strand, within HMPREF1078_RS00875 at 212.493 kb on - strand, within HMPREF1078_RS00875 at 212.511 kb on + strand, within HMPREF1078_RS00875 at 212.595 kb on + strand, within HMPREF1078_RS00875 at 212.595 kb on + strand, within HMPREF1078_RS00875 at 212.596 kb on - strand, within HMPREF1078_RS00875 at 212.631 kb on + strand, within HMPREF1078_RS00875 at 212.631 kb on + strand, within HMPREF1078_RS00875 at 212.631 kb on + strand, within HMPREF1078_RS00875 at 212.631 kb on + strand, within HMPREF1078_RS00875 at 212.631 kb on + strand, within HMPREF1078_RS00875 at 212.632 kb on - strand, within HMPREF1078_RS00875 at 212.632 kb on - strand, within HMPREF1078_RS00875 at 212.632 kb on - strand, within HMPREF1078_RS00875 at 212.632 kb on - strand, within HMPREF1078_RS00875 at 212.635 kb on + strand, within HMPREF1078_RS00875 at 212.635 kb on + strand, within HMPREF1078_RS00875 at 212.635 kb on + strand, within HMPREF1078_RS00875 at 212.635 kb on + strand, within HMPREF1078_RS00875 at 212.636 kb on - strand, within HMPREF1078_RS00875 at 212.636 kb on - strand, within HMPREF1078_RS00875 at 212.690 kb on - strand, within HMPREF1078_RS00875 at 212.690 kb on - strand, within HMPREF1078_RS00875 at 212.723 kb on + strand, within HMPREF1078_RS00875 at 212.781 kb on + strand, within HMPREF1078_RS00875 at 212.781 kb on + strand, within HMPREF1078_RS00875 at 212.869 kb on + strand, within HMPREF1078_RS00875 at 212.905 kb on + strand, within HMPREF1078_RS00875 at 212.905 kb on + strand, within HMPREF1078_RS00875 at 212.955 kb on + strand, within HMPREF1078_RS00875 at 212.955 kb on - strand, within HMPREF1078_RS00875 at 212.964 kb on + strand, within HMPREF1078_RS00875 at 213.046 kb on - strand, within HMPREF1078_RS00875 at 213.094 kb on - strand, within HMPREF1078_RS00875 at 213.094 kb on - strand, within HMPREF1078_RS00875 at 213.113 kb on - strand, within HMPREF1078_RS00875
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mg/mL (C) remove 210,672 + HMPREF1078_RS00865 0.85 -1.2 210,673 - HMPREF1078_RS00865 0.85 +0.0 210,673 - HMPREF1078_RS00865 0.85 -0.7 210,884 + HMPREF1078_RS00865 0.88 +0.1 210,886 + HMPREF1078_RS00865 0.88 +0.2 210,896 + HMPREF1078_RS00865 0.89 -0.3 210,896 + HMPREF1078_RS00865 0.89 -1.6 210,898 + HMPREF1078_RS00865 0.89 +0.8 210,898 + HMPREF1078_RS00865 0.89 -0.1 211,072 + +0.4 211,115 - +0.0 211,130 + -0.1 211,130 + +0.8 211,131 - +1.2 211,131 - -1.0 211,132 + -0.2 211,132 + +0.1 211,159 + -0.4 211,229 + -0.1 211,275 + +0.6 211,334 + +0.2 211,334 + -2.2 211,368 - +0.0 211,369 + -1.4 211,472 + -0.8 211,472 + -1.1 211,472 + +0.3 211,473 - +0.8 211,473 - -0.8 211,524 - +0.3 211,524 - +0.1 211,574 + +0.1 211,627 - -0.7 211,792 + HMPREF1078_RS00870 0.31 +0.6 211,820 + HMPREF1078_RS00870 0.37 -1.6 211,821 - HMPREF1078_RS00870 0.38 -0.8 211,869 - HMPREF1078_RS00870 0.48 +3.0 211,869 - HMPREF1078_RS00870 0.48 -0.5 211,869 - HMPREF1078_RS00870 0.48 +1.3 211,951 - HMPREF1078_RS00870 0.65 +1.0 212,071 - +1.3 212,071 - +0.2 212,073 - -1.9 212,073 - +1.9 212,128 + -0.6 212,130 + +0.2 212,131 - -1.2 212,144 + -0.3 212,167 + +0.1 212,242 + +0.2 212,243 - -0.2 212,243 - +0.2 212,243 - -0.6 212,243 - -0.3 212,285 - -0.5 212,301 + +0.4 212,302 - -0.7 212,303 + +0.3 212,303 + +1.4 212,304 - -0.5 212,308 - -1.2 212,446 + HMPREF1078_RS00875 0.20 -1.7 212,478 - HMPREF1078_RS00875 0.22 -1.0 212,492 + HMPREF1078_RS00875 0.23 +0.9 212,493 - HMPREF1078_RS00875 0.23 +0.6 212,511 + HMPREF1078_RS00875 0.25 -2.9 212,595 + HMPREF1078_RS00875 0.31 -0.8 212,595 + HMPREF1078_RS00875 0.31 -1.0 212,596 - HMPREF1078_RS00875 0.31 +0.2 212,631 + HMPREF1078_RS00875 0.34 -1.5 212,631 + HMPREF1078_RS00875 0.34 -1.9 212,631 + HMPREF1078_RS00875 0.34 -1.0 212,631 + HMPREF1078_RS00875 0.34 -0.4 212,631 + HMPREF1078_RS00875 0.34 +0.1 212,632 - HMPREF1078_RS00875 0.34 +0.3 212,632 - HMPREF1078_RS00875 0.34 +1.3 212,632 - HMPREF1078_RS00875 0.34 +0.2 212,632 - HMPREF1078_RS00875 0.34 +0.0 212,635 + HMPREF1078_RS00875 0.34 +1.6 212,635 + HMPREF1078_RS00875 0.34 +1.3 212,635 + HMPREF1078_RS00875 0.34 -0.5 212,635 + HMPREF1078_RS00875 0.34 +1.2 212,636 - HMPREF1078_RS00875 0.34 -0.1 212,636 - HMPREF1078_RS00875 0.34 +0.6 212,690 - HMPREF1078_RS00875 0.38 +0.4 212,690 - HMPREF1078_RS00875 0.38 +0.9 212,723 + HMPREF1078_RS00875 0.40 -2.0 212,781 + HMPREF1078_RS00875 0.45 -0.7 212,781 + HMPREF1078_RS00875 0.45 +0.3 212,869 + HMPREF1078_RS00875 0.51 -0.2 212,905 + HMPREF1078_RS00875 0.54 +0.7 212,905 + HMPREF1078_RS00875 0.54 -0.5 212,955 + HMPREF1078_RS00875 0.58 -0.2 212,955 - HMPREF1078_RS00875 0.58 -0.3 212,964 + HMPREF1078_RS00875 0.58 +0.2 213,046 - HMPREF1078_RS00875 0.64 +0.5 213,094 - HMPREF1078_RS00875 0.68 +0.3 213,094 - HMPREF1078_RS00875 0.68 +0.9 213,113 - HMPREF1078_RS00875 0.69 -0.8
Or see this region's nucleotide sequence