Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS17065

Experiment: Sucrose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sucrose 10 mg/mL (C)
121,545	+		HMPREF1078_RS17055	0.75	-1.7
121,545	+		HMPREF1078_RS17055	0.75	+0.4
121,546	-		HMPREF1078_RS17055	0.75	-1.1
121,546	-		HMPREF1078_RS17055	0.75	-0.4
121,546	-		HMPREF1078_RS17055	0.75	-0.3
121,546	-		HMPREF1078_RS17055	0.75	-0.2
121,654	+		HMPREF1078_RS17055	0.83	-0.2
121,654	+		HMPREF1078_RS17055	0.83	-0.2
121,654	+		HMPREF1078_RS17055	0.83	-0.3
121,654	+		HMPREF1078_RS17055	0.83	-0.5
121,654	+		HMPREF1078_RS17055	0.83	-0.4
121,654	+		HMPREF1078_RS17055	0.83	-0.5
121,654	+		HMPREF1078_RS17055	0.83	-0.4
121,654	+		HMPREF1078_RS17055	0.83	-1.7
121,655	-		HMPREF1078_RS17055	0.83	+0.2
121,655	-		HMPREF1078_RS17055	0.83	-1.3
121,655	-		HMPREF1078_RS17055	0.83	-1.6
121,660	+		HMPREF1078_RS17055	0.83	+0.8
121,660	+		HMPREF1078_RS17055	0.83	+0.1
121,660	+		HMPREF1078_RS17055	0.83	-0.4
121,661	-		HMPREF1078_RS17055	0.83	-0.2
121,714	+		HMPREF1078_RS17055	0.87	-0.7
121,731	-		HMPREF1078_RS17055	0.88	+0.0
121,816	+				+0.2
121,817	-				-1.1
121,817	-				-0.8
121,856	+				-1.6
121,857	-				-0.0
121,898	+				+0.0
121,903	-				-0.6
121,906	+				-1.4
121,945	+				-0.3
121,946	-				-0.2
122,026	-				+0.4
122,042	-				-0.5
122,047	-				-0.5
122,078	+				-0.6
122,079	-				+1.3
122,095	-				-0.9
122,095	-				-1.6
122,095	-				-0.2
122,108	-				-0.2
122,119	+				-0.6
122,120	-				-0.2
122,126	+				+0.4
122,137	+				-0.7
122,137	+				+0.6
122,138	-				+0.3
122,138	-				+0.9
122,138	-				+0.5
122,138	-				+0.8
122,150	+				-0.6
122,166	-				-0.5
122,183	-				-0.3
122,212	-				+1.2
122,221	+				-0.5
122,221	+				-0.8
122,222	-				+0.4
122,222	-				+0.2
122,222	-				-0.1
122,222	-				+1.2
122,239	+		HMPREF1078_RS17060	0.11	-0.0
122,239	+		HMPREF1078_RS17060	0.11	-0.6
122,239	+		HMPREF1078_RS17060	0.11	-0.3
122,240	-		HMPREF1078_RS17060	0.12	+0.3
122,240	-		HMPREF1078_RS17060	0.12	+0.5
122,270	+		HMPREF1078_RS17060	0.24	-0.4
122,287	-		HMPREF1078_RS17060	0.31	+0.3
122,287	-		HMPREF1078_RS17060	0.31	-0.8
122,300	+		HMPREF1078_RS17060	0.36	-0.3
122,410	+		HMPREF1078_RS17060	0.81	+0.2
122,427	-		HMPREF1078_RS17060	0.88	-0.5
122,429	+		HMPREF1078_RS17060	0.89	+0.0
122,430	-				+0.1
122,430	-				-0.7
122,432	+				+0.5
122,433	-				-0.8
122,433	-				+1.2
122,448	+				-0.0
122,453	-				-0.1
122,474	+				+0.4
122,474	+				+0.0
122,489	+				-0.1
122,511	+				+1.4
122,523	+				-0.4
122,538	+				+0.7
122,539	-				-0.7
122,539	-				-2.1
122,540	+				-0.5
122,540	+				-1.6
122,540	+				-1.1
122,540	+				-0.9
122,540	+				+1.0
122,540	+				-1.8
122,541	-				-1.4
122,541	-				+0.7
122,541	-				-0.5
122,541	-				-0.4
122,541	-				-1.0
122,541	-				-0.9
122,542	+				+0.7
122,542	+				-1.9
122,542	+				+1.4
122,543	-				-0.3
122,638	+		HMPREF1078_RS17065	0.13	-1.0
122,640	+		HMPREF1078_RS17065	0.13	-0.9
122,640	+		HMPREF1078_RS17065	0.13	+0.5
122,641	-		HMPREF1078_RS17065	0.13	-1.5
122,641	-		HMPREF1078_RS17065	0.13	+0.5
122,647	+		HMPREF1078_RS17065	0.14	-2.1
122,667	+		HMPREF1078_RS17065	0.16	-2.7
122,667	+		HMPREF1078_RS17065	0.16	-1.9
122,668	-		HMPREF1078_RS17065	0.16	-1.5
122,675	-		HMPREF1078_RS17065	0.17	-1.6
122,704	-		HMPREF1078_RS17065	0.20	+1.3
122,776	+		HMPREF1078_RS17065	0.28	+0.4
122,810	+		HMPREF1078_RS17065	0.32	-1.0
122,810	+		HMPREF1078_RS17065	0.32	-1.9
122,810	+		HMPREF1078_RS17065	0.32	-0.0
122,810	+		HMPREF1078_RS17065	0.32	-1.7
122,810	+		HMPREF1078_RS17065	0.32	-1.9
122,811	-		HMPREF1078_RS17065	0.32	-0.5
122,811	-		HMPREF1078_RS17065	0.32	-1.8
122,811	-		HMPREF1078_RS17065	0.32	-1.8
122,811	-		HMPREF1078_RS17065	0.32	-1.3
122,811	-		HMPREF1078_RS17065	0.32	+1.9
122,832	+		HMPREF1078_RS17065	0.34	-1.3
122,834	+		HMPREF1078_RS17065	0.34	+1.0
122,902	-		HMPREF1078_RS17065	0.42	+0.2
122,912	+		HMPREF1078_RS17065	0.43	-0.3
122,930	+		HMPREF1078_RS17065	0.45	-0.7
122,987	+		HMPREF1078_RS17065	0.51	+0.5
122,987	+		HMPREF1078_RS17065	0.51	+1.7
122,987	+		HMPREF1078_RS17065	0.51	-1.8
122,988	-		HMPREF1078_RS17065	0.51	-0.7
122,988	-		HMPREF1078_RS17065	0.51	+0.3
123,020	+		HMPREF1078_RS17065	0.55	-0.6
123,088	+		HMPREF1078_RS17065	0.62	-1.7
123,089	-		HMPREF1078_RS17065	0.62	-0.5
123,099	+		HMPREF1078_RS17065	0.63	+0.3
123,100	-		HMPREF1078_RS17065	0.64	+0.3
123,168	+		HMPREF1078_RS17065	0.71	-2.0
123,169	-		HMPREF1078_RS17065	0.71	+0.3
123,169	-		HMPREF1078_RS17065	0.71	-2.1
123,169	-		HMPREF1078_RS17065	0.71	-1.4
123,184	+		HMPREF1078_RS17065	0.73	+0.3
123,184	+		HMPREF1078_RS17065	0.73	-0.7
123,184	+		HMPREF1078_RS17065	0.73	-0.9
123,197	+		HMPREF1078_RS17065	0.74	-1.0
123,198	-		HMPREF1078_RS17065	0.74	+0.3
123,230	+		HMPREF1078_RS17065	0.78	-0.9
123,249	+		HMPREF1078_RS17065	0.80	+1.3
123,250	-		HMPREF1078_RS17065	0.80	-0.5
123,287	+		HMPREF1078_RS17065	0.84	-1.6
123,287	+		HMPREF1078_RS17065	0.84	-1.0
123,403	-				-1.0
124,221	-				+0.4
124,221	-				+0.6
124,223	-				-0.8
124,252	+				+0.4
124,264	+				-0.5
124,264	+				+0.2
124,357	-				-0.6
124,369	-				-0.1
124,376	+				-0.3
124,376	+				-0.3
124,376	+				-1.9
124,377	-				-0.5
124,385	+				-1.4
124,393	+				-1.1
124,393	+				-2.0
124,394	-				+0.1
124,394	-				+0.3
124,394	-				-0.2