Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS19955

Experiment: NAG 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG 10 mg/mL (C)
260,696	+		HMPREF1078_RS14000	0.47	+0.3
260,731	+		HMPREF1078_RS14000	0.50	+0.3
260,763	+		HMPREF1078_RS14000	0.52	+1.6
260,770	-		HMPREF1078_RS14000	0.52	+0.5
260,810	+		HMPREF1078_RS14000	0.55	+0.9
260,811	-		HMPREF1078_RS14000	0.55	-0.2
260,811	-		HMPREF1078_RS14000	0.55	-0.6
260,862	+		HMPREF1078_RS14000	0.59	+0.5
260,863	-		HMPREF1078_RS14000	0.59	-0.1
260,863	-		HMPREF1078_RS14000	0.59	-0.1
260,863	-		HMPREF1078_RS14000	0.59	-2.3
261,041	+		HMPREF1078_RS14000	0.71	-0.2
261,042	-		HMPREF1078_RS14000	0.71	-0.5
261,142	+		HMPREF1078_RS14000	0.78	+1.9
261,142	+		HMPREF1078_RS14000	0.78	+0.6
261,218	-		HMPREF1078_RS14000	0.83	-0.1
261,218	-		HMPREF1078_RS14000	0.83	-1.7
261,296	-		HMPREF1078_RS14000	0.88	-0.4
261,335	+				-0.9
261,335	+				+0.2
261,335	+				+0.2
261,336	-				-0.8
261,343	-				+0.4
261,450	-				+0.5
261,472	+				-1.7
261,472	+				+0.3
261,482	+				-0.4
261,484	+				+0.7
261,485	-				+0.8
261,491	+				+0.5
261,497	-				+0.9
261,499	-				+0.9
261,530	+				-2.4
261,578	+				+2.6
261,578	+				+0.4
261,588	+				-0.4
261,588	+				+0.5
261,604	+				+1.9
261,604	+				-0.3
261,619	+				+1.4
261,619	+				-0.4
261,675	+		HMPREF1078_RS19955	0.28	-0.5
261,727	+		HMPREF1078_RS19955	0.52	-0.5
261,751	+		HMPREF1078_RS19955	0.63	+2.5
261,751	+		HMPREF1078_RS19955	0.63	+1.2
261,753	+		HMPREF1078_RS19955	0.63	+0.2
261,753	+		HMPREF1078_RS19955	0.63	+0.8
261,753	+		HMPREF1078_RS19955	0.63	+0.8
261,775	+		HMPREF1078_RS19955	0.74	+1.7
261,784	+		HMPREF1078_RS19955	0.78	+1.7
261,801	+		HMPREF1078_RS19955	0.85	+0.3
261,801	+		HMPREF1078_RS19955	0.85	+0.1
261,803	+		HMPREF1078_RS19955	0.86	+0.3
261,808	+		HMPREF1078_RS19955	0.89	-0.7
261,808	+		HMPREF1078_RS19955	0.89	+1.1
261,808	+		HMPREF1078_RS19955	0.89	-0.5
261,813	+				+0.1
261,830	+				+1.8
262,458	-				-0.8
262,458	-				+0.1
262,461	+				+1.2
262,462	-				+0.8
262,462	-				+1.8
262,475	+				+1.0
262,476	-				+1.3
262,476	-				+1.5
262,477	+				+0.4
262,477	+				+0.6
262,477	+				-0.5
262,477	+				+1.0
262,477	+				-0.3
262,477	+				+0.7
262,477	+				+1.2
262,477	+				+1.1
262,478	-				+1.4
262,478	-				+1.2
262,478	-				+2.2
262,478	-				+1.5
262,478	-				+0.8
262,481	+				+0.8
262,481	+				+1.8
262,481	+				-0.1
262,481	+				+0.3
262,481	+				+0.9
262,481	+				+1.7
262,481	+				-0.2
262,481	+				+1.3
262,482	-				+3.1
262,482	-				-0.6
262,482	-				+1.7
262,482	-				+1.5
262,482	-				-0.1
262,482	-				+0.9
262,482	-				+1.9
262,483	+				+0.7
262,483	+				+1.7
262,483	+				-0.3
262,483	+				+1.8
262,483	+				+1.4
262,483	+				+0.3
262,483	+				+1.8
262,484	-				+1.3
262,484	-				+2.3
262,484	-				-0.2
262,484	-				+0.1
262,484	-				+1.4
262,484	-				-2.5
262,484	-				+1.0
262,484	-				+1.3
262,485	+				-2.6
262,485	+				+1.5
262,485	+				+2.1
262,485	+				+1.3
262,486	-				-0.1
262,486	-				+2.1
262,486	-				+1.2
262,558	+				-0.3
262,566	-				+1.0
262,574	+				+1.1
262,574	+				+0.4
262,575	-				-0.9
262,587	+				+1.2
262,588	-				+0.7
262,588	-				-1.0
262,591	+				-1.0
262,682	-				+0.7
262,734	+				-0.2
262,791	+		HMPREF1078_RS14015	0.14	-5.3
262,806	-		HMPREF1078_RS14015	0.15	+1.0
262,820	-		HMPREF1078_RS14015	0.16	+0.7
262,820	-		HMPREF1078_RS14015	0.16	+0.2
262,820	-		HMPREF1078_RS14015	0.16	+0.5