Experiment: NAG 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09850 and HMPREF1078_RS09855 are separated by 86 nucleotides HMPREF1078_RS09855 and HMPREF1078_RS09860 overlap by 8 nucleotides HMPREF1078_RS09860 and HMPREF1078_RS09865 are separated by 263 nucleotides
HMPREF1078_RS09850: HMPREF1078_RS09850 - IS66 family transposase, at 568,637 to 570,208
_RS09850
HMPREF1078_RS09855: HMPREF1078_RS09855 - IS66 family insertion sequence element accessory protein TnpB, at 570,295 to 570,642
_RS09855
HMPREF1078_RS09860: HMPREF1078_RS09860 - hypothetical protein, at 570,635 to 571,057
_RS09860
HMPREF1078_RS09865: HMPREF1078_RS09865 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 571,321 to 571,995
_RS09865
Position (kb) 570
571 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 569.374 kb on + strand, within HMPREF1078_RS09850 at 569.375 kb on - strand, within HMPREF1078_RS09850 at 569.377 kb on - strand, within HMPREF1078_RS09850 at 569.434 kb on - strand, within HMPREF1078_RS09850 at 569.434 kb on - strand, within HMPREF1078_RS09850 at 569.437 kb on - strand, within HMPREF1078_RS09850 at 569.437 kb on - strand, within HMPREF1078_RS09850 at 569.458 kb on - strand, within HMPREF1078_RS09850 at 569.458 kb on - strand, within HMPREF1078_RS09850 at 569.587 kb on + strand, within HMPREF1078_RS09850 at 569.587 kb on + strand, within HMPREF1078_RS09850 at 569.607 kb on + strand, within HMPREF1078_RS09850 at 569.607 kb on + strand, within HMPREF1078_RS09850 at 569.613 kb on + strand, within HMPREF1078_RS09850 at 569.614 kb on - strand, within HMPREF1078_RS09850 at 569.652 kb on + strand, within HMPREF1078_RS09850 at 569.653 kb on - strand, within HMPREF1078_RS09850 at 569.653 kb on - strand, within HMPREF1078_RS09850 at 569.653 kb on - strand, within HMPREF1078_RS09850 at 569.657 kb on - strand, within HMPREF1078_RS09850 at 569.694 kb on + strand, within HMPREF1078_RS09850 at 569.694 kb on + strand, within HMPREF1078_RS09850 at 569.694 kb on + strand, within HMPREF1078_RS09850 at 569.695 kb on - strand, within HMPREF1078_RS09850 at 569.715 kb on + strand, within HMPREF1078_RS09850 at 569.715 kb on + strand, within HMPREF1078_RS09850 at 569.715 kb on + strand, within HMPREF1078_RS09850 at 569.731 kb on - strand, within HMPREF1078_RS09850 at 569.734 kb on + strand, within HMPREF1078_RS09850 at 569.734 kb on + strand, within HMPREF1078_RS09850 at 569.734 kb on + strand, within HMPREF1078_RS09850 at 569.734 kb on + strand, within HMPREF1078_RS09850 at 569.734 kb on + strand, within HMPREF1078_RS09850 at 569.734 kb on + strand, within HMPREF1078_RS09850 at 569.734 kb on + strand, within HMPREF1078_RS09850 at 569.735 kb on - strand, within HMPREF1078_RS09850 at 569.735 kb on - strand, within HMPREF1078_RS09850 at 569.735 kb on - strand, within HMPREF1078_RS09850 at 569.735 kb on - strand, within HMPREF1078_RS09850 at 569.735 kb on - strand, within HMPREF1078_RS09850 at 569.735 kb on - strand, within HMPREF1078_RS09850 at 569.785 kb on + strand, within HMPREF1078_RS09850 at 569.836 kb on + strand, within HMPREF1078_RS09850 at 569.836 kb on + strand, within HMPREF1078_RS09850 at 569.836 kb on + strand, within HMPREF1078_RS09850 at 569.836 kb on + strand, within HMPREF1078_RS09850 at 569.924 kb on + strand, within HMPREF1078_RS09850 at 569.956 kb on + strand, within HMPREF1078_RS09850 at 570.317 kb on + strand at 570.594 kb on + strand, within HMPREF1078_RS09855 at 570.597 kb on - strand, within HMPREF1078_RS09855 at 570.599 kb on + strand, within HMPREF1078_RS09855 at 570.600 kb on - strand, within HMPREF1078_RS09855 at 570.606 kb on - strand, within HMPREF1078_RS09855 at 570.615 kb on - strand at 570.667 kb on - strand at 570.668 kb on + strand at 570.668 kb on + strand at 570.687 kb on - strand, within HMPREF1078_RS09860 at 570.759 kb on + strand, within HMPREF1078_RS09860 at 570.759 kb on + strand, within HMPREF1078_RS09860 at 570.851 kb on - strand, within HMPREF1078_RS09860 at 570.941 kb on - strand, within HMPREF1078_RS09860 at 570.943 kb on - strand, within HMPREF1078_RS09860 at 570.948 kb on - strand, within HMPREF1078_RS09860 at 570.948 kb on - strand, within HMPREF1078_RS09860 at 570.984 kb on + strand, within HMPREF1078_RS09860 at 570.985 kb on - strand, within HMPREF1078_RS09860 at 571.017 kb on + strand at 571.017 kb on + strand at 571.018 kb on - strand at 571.018 kb on - strand at 571.030 kb on + strand at 571.077 kb on + strand at 571.105 kb on - strand at 571.123 kb on - strand at 571.127 kb on - strand at 571.135 kb on + strand at 571.139 kb on + strand at 571.139 kb on + strand at 571.139 kb on + strand at 571.139 kb on + strand at 571.139 kb on + strand at 571.139 kb on + strand at 571.140 kb on - strand at 571.140 kb on - strand at 571.140 kb on - strand at 571.147 kb on - strand at 571.151 kb on - strand at 571.151 kb on - strand at 571.163 kb on + strand at 571.164 kb on - strand at 571.206 kb on + strand at 571.214 kb on + strand at 571.219 kb on + strand at 571.253 kb on - strand at 571.288 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 10 mg/mL (C) remove 569,374 + HMPREF1078_RS09850 0.47 +1.1 569,375 - HMPREF1078_RS09850 0.47 +0.1 569,377 - HMPREF1078_RS09850 0.47 +1.3 569,434 - HMPREF1078_RS09850 0.51 +1.3 569,434 - HMPREF1078_RS09850 0.51 -1.2 569,437 - HMPREF1078_RS09850 0.51 +0.9 569,437 - HMPREF1078_RS09850 0.51 +0.3 569,458 - HMPREF1078_RS09850 0.52 -0.6 569,458 - HMPREF1078_RS09850 0.52 +1.4 569,587 + HMPREF1078_RS09850 0.60 +1.4 569,587 + HMPREF1078_RS09850 0.60 +0.1 569,607 + HMPREF1078_RS09850 0.62 -0.8 569,607 + HMPREF1078_RS09850 0.62 -1.2 569,613 + HMPREF1078_RS09850 0.62 -1.7 569,614 - HMPREF1078_RS09850 0.62 -0.5 569,652 + HMPREF1078_RS09850 0.65 -0.2 569,653 - HMPREF1078_RS09850 0.65 -0.1 569,653 - HMPREF1078_RS09850 0.65 -1.3 569,653 - HMPREF1078_RS09850 0.65 -0.5 569,657 - HMPREF1078_RS09850 0.65 +1.0 569,694 + HMPREF1078_RS09850 0.67 +1.2 569,694 + HMPREF1078_RS09850 0.67 +0.4 569,694 + HMPREF1078_RS09850 0.67 +1.6 569,695 - HMPREF1078_RS09850 0.67 -0.3 569,715 + HMPREF1078_RS09850 0.69 +1.4 569,715 + HMPREF1078_RS09850 0.69 -3.1 569,715 + HMPREF1078_RS09850 0.69 -0.8 569,731 - HMPREF1078_RS09850 0.70 -0.0 569,734 + HMPREF1078_RS09850 0.70 -0.2 569,734 + HMPREF1078_RS09850 0.70 -1.5 569,734 + HMPREF1078_RS09850 0.70 -0.0 569,734 + HMPREF1078_RS09850 0.70 -2.0 569,734 + HMPREF1078_RS09850 0.70 -0.9 569,734 + HMPREF1078_RS09850 0.70 -0.5 569,734 + HMPREF1078_RS09850 0.70 +0.3 569,735 - HMPREF1078_RS09850 0.70 -0.9 569,735 - HMPREF1078_RS09850 0.70 +0.4 569,735 - HMPREF1078_RS09850 0.70 -0.4 569,735 - HMPREF1078_RS09850 0.70 +0.6 569,735 - HMPREF1078_RS09850 0.70 -0.2 569,735 - HMPREF1078_RS09850 0.70 -0.6 569,785 + HMPREF1078_RS09850 0.73 +1.8 569,836 + HMPREF1078_RS09850 0.76 -1.1 569,836 + HMPREF1078_RS09850 0.76 +0.5 569,836 + HMPREF1078_RS09850 0.76 -0.4 569,836 + HMPREF1078_RS09850 0.76 -0.8 569,924 + HMPREF1078_RS09850 0.82 +0.4 569,956 + HMPREF1078_RS09850 0.84 +2.6 570,317 + -1.2 570,594 + HMPREF1078_RS09855 0.86 -1.7 570,597 - HMPREF1078_RS09855 0.87 +0.2 570,599 + HMPREF1078_RS09855 0.87 +0.4 570,600 - HMPREF1078_RS09855 0.88 -1.3 570,606 - HMPREF1078_RS09855 0.89 -2.3 570,615 - -0.8 570,667 - +0.0 570,668 + -3.7 570,668 + -0.6 570,687 - HMPREF1078_RS09860 0.12 -3.1 570,759 + HMPREF1078_RS09860 0.29 +0.2 570,759 + HMPREF1078_RS09860 0.29 +0.6 570,851 - HMPREF1078_RS09860 0.51 +0.4 570,941 - HMPREF1078_RS09860 0.72 -1.5 570,943 - HMPREF1078_RS09860 0.73 -0.4 570,948 - HMPREF1078_RS09860 0.74 +0.5 570,948 - HMPREF1078_RS09860 0.74 -1.1 570,984 + HMPREF1078_RS09860 0.83 -0.1 570,985 - HMPREF1078_RS09860 0.83 +2.2 571,017 + +0.6 571,017 + -0.0 571,018 - -2.7 571,018 - -0.7 571,030 + -0.4 571,077 + -0.7 571,105 - +0.8 571,123 - -0.0 571,127 - +1.5 571,135 + +0.6 571,139 + -0.4 571,139 + +0.1 571,139 + +0.4 571,139 + +1.8 571,139 + +1.6 571,139 + +0.0 571,140 - -1.1 571,140 - -0.1 571,140 - -1.2 571,147 - +0.6 571,151 - +0.7 571,151 - +0.6 571,163 + +0.6 571,164 - -0.7 571,206 + -1.6 571,214 + -1.7 571,219 + -0.2 571,253 - -1.7 571,288 + +0.5
Or see this region's nucleotide sequence