Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS09455

Experiment: NAG 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS09450 and HMPREF1078_RS09455 are separated by 48 nucleotidesHMPREF1078_RS09455 and HMPREF1078_RS09460 are separated by 109 nucleotides HMPREF1078_RS09450: HMPREF1078_RS09450 - pyridoxamine kinase, at 473,242 to 474,102 _RS09450 HMPREF1078_RS09455: HMPREF1078_RS09455 - 2-dehydropantoate 2-reductase, at 474,151 to 475,089 _RS09455 HMPREF1078_RS09460: HMPREF1078_RS09460 - alpha/beta hydrolase-fold protein, at 475,199 to 476,059 _RS09460 Position (kb) 474 475 476Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 473.152 kb on + strandat 473.153 kb on - strandat 473.159 kb on - strandat 473.159 kb on - strandat 473.173 kb on - strandat 473.173 kb on - strandat 473.177 kb on - strandat 473.188 kb on - strandat 473.215 kb on - strandat 473.232 kb on + strandat 473.232 kb on + strandat 473.232 kb on + strandat 473.237 kb on + strandat 473.237 kb on + strandat 473.240 kb on - strandat 473.279 kb on + strandat 473.279 kb on + strandat 473.279 kb on + strandat 473.280 kb on - strandat 473.280 kb on - strandat 473.280 kb on - strandat 473.280 kb on - strandat 473.348 kb on + strand, within HMPREF1078_RS09450at 473.375 kb on + strand, within HMPREF1078_RS09450at 473.376 kb on - strand, within HMPREF1078_RS09450at 473.376 kb on - strand, within HMPREF1078_RS09450at 473.388 kb on + strand, within HMPREF1078_RS09450at 473.388 kb on + strand, within HMPREF1078_RS09450at 473.389 kb on - strand, within HMPREF1078_RS09450at 473.407 kb on + strand, within HMPREF1078_RS09450at 473.408 kb on - strand, within HMPREF1078_RS09450at 473.413 kb on + strand, within HMPREF1078_RS09450at 473.414 kb on - strand, within HMPREF1078_RS09450at 473.472 kb on - strand, within HMPREF1078_RS09450at 473.501 kb on + strand, within HMPREF1078_RS09450at 473.546 kb on + strand, within HMPREF1078_RS09450at 473.547 kb on - strand, within HMPREF1078_RS09450at 473.606 kb on + strand, within HMPREF1078_RS09450at 473.606 kb on + strand, within HMPREF1078_RS09450at 473.606 kb on + strand, within HMPREF1078_RS09450at 473.606 kb on + strand, within HMPREF1078_RS09450at 473.606 kb on + strand, within HMPREF1078_RS09450at 473.607 kb on - strand, within HMPREF1078_RS09450at 473.607 kb on - strand, within HMPREF1078_RS09450at 473.608 kb on + strand, within HMPREF1078_RS09450at 473.615 kb on + strand, within HMPREF1078_RS09450at 473.651 kb on + strand, within HMPREF1078_RS09450at 473.651 kb on + strand, within HMPREF1078_RS09450at 473.652 kb on - strand, within HMPREF1078_RS09450at 473.699 kb on + strand, within HMPREF1078_RS09450at 473.700 kb on - strand, within HMPREF1078_RS09450at 473.716 kb on + strand, within HMPREF1078_RS09450at 473.732 kb on - strand, within HMPREF1078_RS09450at 473.743 kb on + strand, within HMPREF1078_RS09450at 473.744 kb on - strand, within HMPREF1078_RS09450at 473.795 kb on + strand, within HMPREF1078_RS09450at 473.795 kb on + strand, within HMPREF1078_RS09450at 473.795 kb on + strand, within HMPREF1078_RS09450at 473.796 kb on - strand, within HMPREF1078_RS09450at 473.807 kb on + strand, within HMPREF1078_RS09450at 473.808 kb on - strand, within HMPREF1078_RS09450at 473.808 kb on - strand, within HMPREF1078_RS09450at 473.808 kb on - strand, within HMPREF1078_RS09450at 473.808 kb on - strand, within HMPREF1078_RS09450at 473.808 kb on - strand, within HMPREF1078_RS09450at 473.808 kb on - strand, within HMPREF1078_RS09450at 473.809 kb on + strand, within HMPREF1078_RS09450at 473.809 kb on + strand, within HMPREF1078_RS09450at 473.809 kb on + strand, within HMPREF1078_RS09450at 473.842 kb on + strand, within HMPREF1078_RS09450at 473.842 kb on + strand, within HMPREF1078_RS09450at 474.007 kb on - strand, within HMPREF1078_RS09450at 474.008 kb on + strand, within HMPREF1078_RS09450at 474.019 kb on + strandat 474.020 kb on - strandat 474.020 kb on - strandat 474.020 kb on - strandat 474.022 kb on - strandat 474.022 kb on - strandat 474.022 kb on - strandat 474.022 kb on - strandat 474.026 kb on + strandat 474.067 kb on - strandat 474.099 kb on - strandat 474.216 kb on - strandat 474.216 kb on - strandat 474.227 kb on - strandat 474.254 kb on - strand, within HMPREF1078_RS09455at 474.254 kb on - strand, within HMPREF1078_RS09455at 474.254 kb on - strand, within HMPREF1078_RS09455at 474.288 kb on - strand, within HMPREF1078_RS09455at 474.291 kb on + strand, within HMPREF1078_RS09455at 474.292 kb on - strand, within HMPREF1078_RS09455at 474.316 kb on - strand, within HMPREF1078_RS09455at 474.399 kb on + strand, within HMPREF1078_RS09455at 474.426 kb on + strand, within HMPREF1078_RS09455at 474.426 kb on + strand, within HMPREF1078_RS09455at 474.428 kb on + strand, within HMPREF1078_RS09455at 474.429 kb on - strand, within HMPREF1078_RS09455at 474.459 kb on + strand, within HMPREF1078_RS09455at 474.459 kb on + strand, within HMPREF1078_RS09455at 474.459 kb on + strand, within HMPREF1078_RS09455at 474.460 kb on - strand, within HMPREF1078_RS09455at 474.494 kb on + strand, within HMPREF1078_RS09455at 474.506 kb on + strand, within HMPREF1078_RS09455at 474.515 kb on + strand, within HMPREF1078_RS09455at 474.551 kb on - strand, within HMPREF1078_RS09455at 474.657 kb on - strand, within HMPREF1078_RS09455at 474.663 kb on + strand, within HMPREF1078_RS09455at 474.665 kb on + strand, within HMPREF1078_RS09455at 474.666 kb on - strand, within HMPREF1078_RS09455at 474.767 kb on - strand, within HMPREF1078_RS09455at 474.798 kb on + strand, within HMPREF1078_RS09455at 474.884 kb on + strand, within HMPREF1078_RS09455at 474.919 kb on - strand, within HMPREF1078_RS09455at 475.048 kb on + strandat 475.048 kb on + strandat 475.112 kb on + strandat 475.112 kb on + strandat 475.113 kb on - strandat 475.113 kb on - strandat 475.113 kb on - strandat 475.113 kb on - strandat 475.113 kb on - strandat 475.125 kb on - strandat 475.154 kb on + strandat 475.154 kb on + strandat 475.160 kb on + strandat 475.160 kb on + strandat 475.161 kb on - strandat 475.187 kb on + strandat 475.190 kb on + strandat 475.193 kb on + strandat 475.194 kb on - strandat 475.198 kb on + strandat 475.199 kb on - strandat 475.214 kb on + strandat 475.220 kb on + strandat 475.226 kb on - strandat 475.239 kb on + strandat 475.240 kb on - strandat 475.305 kb on + strand, within HMPREF1078_RS09460at 475.305 kb on + strand, within HMPREF1078_RS09460at 475.306 kb on - strand, within HMPREF1078_RS09460at 475.323 kb on - strand, within HMPREF1078_RS09460at 475.331 kb on + strand, within HMPREF1078_RS09460at 475.379 kb on + strand, within HMPREF1078_RS09460at 475.394 kb on + strand, within HMPREF1078_RS09460at 475.396 kb on + strand, within HMPREF1078_RS09460at 475.397 kb on - strand, within HMPREF1078_RS09460at 475.397 kb on - strand, within HMPREF1078_RS09460at 475.419 kb on + strand, within HMPREF1078_RS09460at 475.517 kb on + strand, within HMPREF1078_RS09460at 475.519 kb on + strand, within HMPREF1078_RS09460at 475.573 kb on + strand, within HMPREF1078_RS09460at 475.573 kb on + strand, within HMPREF1078_RS09460at 475.580 kb on + strand, within HMPREF1078_RS09460at 475.581 kb on - strand, within HMPREF1078_RS09460at 475.581 kb on - strand, within HMPREF1078_RS09460at 475.581 kb on - strand, within HMPREF1078_RS09460at 475.595 kb on + strand, within HMPREF1078_RS09460at 475.667 kb on + strand, within HMPREF1078_RS09460at 475.874 kb on + strand, within HMPREF1078_RS09460at 475.875 kb on - strand, within HMPREF1078_RS09460at 475.877 kb on + strand, within HMPREF1078_RS09460at 475.997 kb on + strandat 475.997 kb on + strandat 475.998 kb on - strandat 476.025 kb on + strandat 476.071 kb on + strandat 476.072 kb on - strandat 476.072 kb on - strandat 476.072 kb on - strandat 476.077 kb on + strandat 476.078 kb on - strandat 476.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG 10 mg/mL (C)
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473,152 + -0.0
473,153 - -1.3
473,159 - +1.9
473,159 - +1.7
473,173 - +0.3
473,173 - +0.2
473,177 - +0.2
473,188 - +0.2
473,215 - +1.8
473,232 + -0.0
473,232 + -0.8
473,232 + -0.1
473,237 + +1.0
473,237 + +0.6
473,240 - +0.4
473,279 + -0.7
473,279 + -0.8
473,279 + +1.0
473,280 - +0.0
473,280 - +1.0
473,280 - -0.3
473,280 - -0.9
473,348 + HMPREF1078_RS09450 0.12 -1.3
473,375 + HMPREF1078_RS09450 0.15 +1.0
473,376 - HMPREF1078_RS09450 0.16 -1.6
473,376 - HMPREF1078_RS09450 0.16 -0.3
473,388 + HMPREF1078_RS09450 0.17 +1.3
473,388 + HMPREF1078_RS09450 0.17 -0.3
473,389 - HMPREF1078_RS09450 0.17 -0.3
473,407 + HMPREF1078_RS09450 0.19 -0.6
473,408 - HMPREF1078_RS09450 0.19 -0.0
473,413 + HMPREF1078_RS09450 0.20 +0.3
473,414 - HMPREF1078_RS09450 0.20 +1.0
473,472 - HMPREF1078_RS09450 0.27 -1.6
473,501 + HMPREF1078_RS09450 0.30 -0.5
473,546 + HMPREF1078_RS09450 0.35 +0.1
473,547 - HMPREF1078_RS09450 0.35 -0.8
473,606 + HMPREF1078_RS09450 0.42 +0.8
473,606 + HMPREF1078_RS09450 0.42 -0.2
473,606 + HMPREF1078_RS09450 0.42 +0.8
473,606 + HMPREF1078_RS09450 0.42 -1.3
473,606 + HMPREF1078_RS09450 0.42 +1.0
473,607 - HMPREF1078_RS09450 0.42 -0.2
473,607 - HMPREF1078_RS09450 0.42 -0.5
473,608 + HMPREF1078_RS09450 0.43 -0.1
473,615 + HMPREF1078_RS09450 0.43 +0.3
473,651 + HMPREF1078_RS09450 0.48 -0.3
473,651 + HMPREF1078_RS09450 0.48 -2.8
473,652 - HMPREF1078_RS09450 0.48 +0.6
473,699 + HMPREF1078_RS09450 0.53 +0.4
473,700 - HMPREF1078_RS09450 0.53 -0.1
473,716 + HMPREF1078_RS09450 0.55 +1.2
473,732 - HMPREF1078_RS09450 0.57 -0.4
473,743 + HMPREF1078_RS09450 0.58 -1.3
473,744 - HMPREF1078_RS09450 0.58 +0.2
473,795 + HMPREF1078_RS09450 0.64 +1.0
473,795 + HMPREF1078_RS09450 0.64 -2.3
473,795 + HMPREF1078_RS09450 0.64 -0.4
473,796 - HMPREF1078_RS09450 0.64 +0.2
473,807 + HMPREF1078_RS09450 0.66 -0.2
473,808 - HMPREF1078_RS09450 0.66 -0.5
473,808 - HMPREF1078_RS09450 0.66 -2.0
473,808 - HMPREF1078_RS09450 0.66 -0.4
473,808 - HMPREF1078_RS09450 0.66 -1.2
473,808 - HMPREF1078_RS09450 0.66 +1.0
473,808 - HMPREF1078_RS09450 0.66 -0.6
473,809 + HMPREF1078_RS09450 0.66 -0.9
473,809 + HMPREF1078_RS09450 0.66 -2.2
473,809 + HMPREF1078_RS09450 0.66 -1.0
473,842 + HMPREF1078_RS09450 0.70 +0.4
473,842 + HMPREF1078_RS09450 0.70 +0.1
474,007 - HMPREF1078_RS09450 0.89 +0.0
474,008 + HMPREF1078_RS09450 0.89 -0.9
474,019 + +0.3
474,020 - +0.6
474,020 - -0.7
474,020 - +2.0
474,022 - +1.4
474,022 - +2.1
474,022 - +0.3
474,022 - -2.7
474,026 + +0.9
474,067 - +1.6
474,099 - -1.6
474,216 - -0.9
474,216 - +1.0
474,227 - +2.0
474,254 - HMPREF1078_RS09455 0.11 +2.1
474,254 - HMPREF1078_RS09455 0.11 -0.0
474,254 - HMPREF1078_RS09455 0.11 +2.8
474,288 - HMPREF1078_RS09455 0.15 +2.8
474,291 + HMPREF1078_RS09455 0.15 +1.0
474,292 - HMPREF1078_RS09455 0.15 +1.0
474,316 - HMPREF1078_RS09455 0.18 +0.7
474,399 + HMPREF1078_RS09455 0.26 -0.1
474,426 + HMPREF1078_RS09455 0.29 -0.0
474,426 + HMPREF1078_RS09455 0.29 +0.7
474,428 + HMPREF1078_RS09455 0.29 +0.2
474,429 - HMPREF1078_RS09455 0.30 +0.2
474,459 + HMPREF1078_RS09455 0.33 -1.7
474,459 + HMPREF1078_RS09455 0.33 -0.2
474,459 + HMPREF1078_RS09455 0.33 -0.5
474,460 - HMPREF1078_RS09455 0.33 +1.3
474,494 + HMPREF1078_RS09455 0.37 -0.2
474,506 + HMPREF1078_RS09455 0.38 +1.1
474,515 + HMPREF1078_RS09455 0.39 +1.5
474,551 - HMPREF1078_RS09455 0.43 +2.8
474,657 - HMPREF1078_RS09455 0.54 +0.6
474,663 + HMPREF1078_RS09455 0.55 +0.6
474,665 + HMPREF1078_RS09455 0.55 +1.2
474,666 - HMPREF1078_RS09455 0.55 +0.8
474,767 - HMPREF1078_RS09455 0.66 +3.4
474,798 + HMPREF1078_RS09455 0.69 +1.0
474,884 + HMPREF1078_RS09455 0.78 +0.6
474,919 - HMPREF1078_RS09455 0.82 +0.4
475,048 + -0.4
475,048 + -1.3
475,112 + -1.5
475,112 + +1.2
475,113 - +1.8
475,113 - +0.3
475,113 - -0.9
475,113 - +1.0
475,113 - +0.5
475,125 - +0.1
475,154 + +0.4
475,154 + -3.6
475,160 + -2.4
475,160 + +0.2
475,161 - +0.1
475,187 + -0.0
475,190 + +0.8
475,193 + -0.5
475,194 - +0.3
475,198 + +1.0
475,199 - -0.3
475,214 + -2.5
475,220 + -0.3
475,226 - -1.0
475,239 + -0.7
475,240 - -0.2
475,305 + HMPREF1078_RS09460 0.12 -0.3
475,305 + HMPREF1078_RS09460 0.12 +1.6
475,306 - HMPREF1078_RS09460 0.12 -0.4
475,323 - HMPREF1078_RS09460 0.14 -0.6
475,331 + HMPREF1078_RS09460 0.15 -1.0
475,379 + HMPREF1078_RS09460 0.21 +1.0
475,394 + HMPREF1078_RS09460 0.23 -0.2
475,396 + HMPREF1078_RS09460 0.23 -3.6
475,397 - HMPREF1078_RS09460 0.23 -0.8
475,397 - HMPREF1078_RS09460 0.23 -0.4
475,419 + HMPREF1078_RS09460 0.26 -1.6
475,517 + HMPREF1078_RS09460 0.37 -0.3
475,519 + HMPREF1078_RS09460 0.37 +0.7
475,573 + HMPREF1078_RS09460 0.43 -1.3
475,573 + HMPREF1078_RS09460 0.43 -0.2
475,580 + HMPREF1078_RS09460 0.44 +0.2
475,581 - HMPREF1078_RS09460 0.44 +0.5
475,581 - HMPREF1078_RS09460 0.44 +1.8
475,581 - HMPREF1078_RS09460 0.44 -0.1
475,595 + HMPREF1078_RS09460 0.46 -1.8
475,667 + HMPREF1078_RS09460 0.54 +1.4
475,874 + HMPREF1078_RS09460 0.78 -0.8
475,875 - HMPREF1078_RS09460 0.79 -2.5
475,877 + HMPREF1078_RS09460 0.79 -1.6
475,997 + -3.2
475,997 + +1.0
475,998 - -0.4
476,025 + +0.6
476,071 + +0.4
476,072 - +0.2
476,072 - -0.3
476,072 - +0.2
476,077 + +1.2
476,078 - -0.5
476,078 - +0.1

Or see this region's nucleotide sequence