Experiment: NAG 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08945 and HMPREF1078_RS08950 are separated by 657 nucleotides HMPREF1078_RS08950 and HMPREF1078_RS08955 overlap by 1 nucleotides
HMPREF1078_RS08945: HMPREF1078_RS08945 - N-6 DNA methylase, at 380,429 to 386,245
_RS08945
HMPREF1078_RS08950: HMPREF1078_RS08950 - tetracycline resistance ribosomal protection protein Tet(Q), at 386,903 to 388,828
_RS08950
HMPREF1078_RS08955: HMPREF1078_RS08955 - ATP-binding protein, at 388,828 to 391,146
_RS08955
Position (kb) 386
387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 385.924 kb on - strand at 386.145 kb on + strand at 386.165 kb on - strand at 386.185 kb on - strand at 386.204 kb on + strand at 386.205 kb on - strand at 386.205 kb on - strand at 386.244 kb on - strand at 386.248 kb on + strand at 386.249 kb on - strand at 386.268 kb on - strand at 386.271 kb on - strand at 386.274 kb on - strand at 386.274 kb on - strand at 386.323 kb on - strand at 386.323 kb on - strand at 386.326 kb on + strand at 386.327 kb on - strand at 386.328 kb on + strand at 386.384 kb on - strand at 386.393 kb on + strand at 386.397 kb on + strand at 386.397 kb on + strand at 386.397 kb on + strand at 386.397 kb on + strand at 386.397 kb on + strand at 386.398 kb on - strand at 386.398 kb on - strand at 386.398 kb on - strand at 386.441 kb on + strand at 386.441 kb on + strand at 386.441 kb on + strand at 386.441 kb on + strand at 386.441 kb on + strand at 386.442 kb on - strand at 386.442 kb on - strand at 386.442 kb on - strand at 386.442 kb on - strand at 386.473 kb on - strand at 386.502 kb on - strand at 386.514 kb on - strand at 386.514 kb on - strand at 386.517 kb on + strand at 386.518 kb on - strand at 386.518 kb on - strand at 386.518 kb on - strand at 386.518 kb on - strand at 386.518 kb on - strand at 386.538 kb on + strand at 386.539 kb on - strand at 386.556 kb on + strand at 386.557 kb on - strand at 386.568 kb on - strand at 386.572 kb on + strand at 386.601 kb on - strand at 386.601 kb on - strand at 386.602 kb on + strand at 386.635 kb on - strand at 386.663 kb on + strand at 386.664 kb on - strand at 386.700 kb on - strand at 386.747 kb on + strand at 386.790 kb on - strand at 386.793 kb on - strand at 386.793 kb on - strand at 386.795 kb on - strand at 386.802 kb on - strand at 386.805 kb on - strand at 386.805 kb on - strand at 386.805 kb on - strand at 386.812 kb on - strand at 386.823 kb on - strand at 386.823 kb on - strand at 386.850 kb on - strand at 386.881 kb on - strand at 386.881 kb on - strand at 386.881 kb on - strand at 386.881 kb on - strand at 386.884 kb on - strand at 386.884 kb on - strand at 386.886 kb on - strand at 386.886 kb on - strand at 386.886 kb on - strand at 386.888 kb on + strand at 386.889 kb on - strand at 386.896 kb on - strand at 386.912 kb on + strand at 387.038 kb on - strand at 387.044 kb on - strand at 387.046 kb on - strand at 387.046 kb on - strand at 387.055 kb on + strand at 387.065 kb on - strand at 387.088 kb on + strand at 387.088 kb on + strand at 387.088 kb on + strand at 387.088 kb on + strand at 387.089 kb on - strand at 387.089 kb on - strand at 387.089 kb on - strand at 387.217 kb on - strand, within HMPREF1078_RS08950 at 387.217 kb on - strand, within HMPREF1078_RS08950 at 387.275 kb on - strand, within HMPREF1078_RS08950 at 387.277 kb on - strand, within HMPREF1078_RS08950 at 387.277 kb on - strand, within HMPREF1078_RS08950 at 387.280 kb on + strand, within HMPREF1078_RS08950 at 387.281 kb on - strand, within HMPREF1078_RS08950 at 387.287 kb on - strand, within HMPREF1078_RS08950 at 387.330 kb on - strand, within HMPREF1078_RS08950 at 387.334 kb on - strand, within HMPREF1078_RS08950 at 387.384 kb on - strand, within HMPREF1078_RS08950 at 387.413 kb on + strand, within HMPREF1078_RS08950 at 387.413 kb on + strand, within HMPREF1078_RS08950 at 387.413 kb on + strand, within HMPREF1078_RS08950 at 387.413 kb on + strand, within HMPREF1078_RS08950 at 387.414 kb on - strand, within HMPREF1078_RS08950 at 387.414 kb on - strand, within HMPREF1078_RS08950 at 387.415 kb on + strand, within HMPREF1078_RS08950 at 387.415 kb on + strand, within HMPREF1078_RS08950 at 387.415 kb on + strand, within HMPREF1078_RS08950 at 387.415 kb on + strand, within HMPREF1078_RS08950 at 387.416 kb on - strand, within HMPREF1078_RS08950 at 387.416 kb on - strand, within HMPREF1078_RS08950 at 387.416 kb on - strand, within HMPREF1078_RS08950 at 387.418 kb on - strand, within HMPREF1078_RS08950 at 387.418 kb on - strand, within HMPREF1078_RS08950 at 387.460 kb on + strand, within HMPREF1078_RS08950 at 387.460 kb on + strand, within HMPREF1078_RS08950 at 387.461 kb on - strand, within HMPREF1078_RS08950 at 387.461 kb on - strand, within HMPREF1078_RS08950 at 387.461 kb on - strand, within HMPREF1078_RS08950 at 387.462 kb on + strand, within HMPREF1078_RS08950 at 387.465 kb on + strand, within HMPREF1078_RS08950 at 387.466 kb on - strand, within HMPREF1078_RS08950 at 387.515 kb on - strand, within HMPREF1078_RS08950 at 387.558 kb on + strand, within HMPREF1078_RS08950 at 387.622 kb on - strand, within HMPREF1078_RS08950 at 387.660 kb on - strand, within HMPREF1078_RS08950 at 387.660 kb on - strand, within HMPREF1078_RS08950 at 387.660 kb on - strand, within HMPREF1078_RS08950 at 387.660 kb on - strand, within HMPREF1078_RS08950 at 387.668 kb on - strand, within HMPREF1078_RS08950 at 387.668 kb on - strand, within HMPREF1078_RS08950 at 387.673 kb on - strand, within HMPREF1078_RS08950 at 387.673 kb on - strand, within HMPREF1078_RS08950 at 387.694 kb on + strand, within HMPREF1078_RS08950 at 387.710 kb on - strand, within HMPREF1078_RS08950 at 387.714 kb on + strand, within HMPREF1078_RS08950 at 387.797 kb on - strand, within HMPREF1078_RS08950 at 387.816 kb on + strand, within HMPREF1078_RS08950 at 387.817 kb on - strand, within HMPREF1078_RS08950 at 387.856 kb on - strand, within HMPREF1078_RS08950 at 387.863 kb on - strand, within HMPREF1078_RS08950 at 387.865 kb on - strand, within HMPREF1078_RS08950 at 387.865 kb on - strand, within HMPREF1078_RS08950 at 387.888 kb on - strand, within HMPREF1078_RS08950 at 387.892 kb on - strand, within HMPREF1078_RS08950 at 387.899 kb on - strand, within HMPREF1078_RS08950 at 387.899 kb on - strand, within HMPREF1078_RS08950 at 387.922 kb on - strand, within HMPREF1078_RS08950 at 388.050 kb on - strand, within HMPREF1078_RS08950 at 388.052 kb on - strand, within HMPREF1078_RS08950 at 388.052 kb on - strand, within HMPREF1078_RS08950 at 388.076 kb on + strand, within HMPREF1078_RS08950 at 388.160 kb on - strand, within HMPREF1078_RS08950 at 388.160 kb on - strand, within HMPREF1078_RS08950 at 388.193 kb on - strand, within HMPREF1078_RS08950 at 388.199 kb on - strand, within HMPREF1078_RS08950 at 388.199 kb on - strand, within HMPREF1078_RS08950 at 388.240 kb on - strand, within HMPREF1078_RS08950 at 388.302 kb on - strand, within HMPREF1078_RS08950 at 388.302 kb on - strand, within HMPREF1078_RS08950 at 388.308 kb on - strand, within HMPREF1078_RS08950 at 388.398 kb on - strand, within HMPREF1078_RS08950 at 388.439 kb on - strand, within HMPREF1078_RS08950 at 388.470 kb on - strand, within HMPREF1078_RS08950 at 388.470 kb on - strand, within HMPREF1078_RS08950 at 388.568 kb on - strand, within HMPREF1078_RS08950 at 388.616 kb on - strand, within HMPREF1078_RS08950 at 388.634 kb on - strand, within HMPREF1078_RS08950 at 388.873 kb on - strand at 388.873 kb on - strand at 388.873 kb on - strand at 388.873 kb on - strand at 388.875 kb on - strand at 388.875 kb on - strand at 388.875 kb on - strand at 388.879 kb on - strand at 388.879 kb on - strand at 388.909 kb on - strand at 388.912 kb on - strand at 388.992 kb on + strand at 389.036 kb on + strand at 389.068 kb on + strand, within HMPREF1078_RS08955 at 389.069 kb on - strand, within HMPREF1078_RS08955 at 389.069 kb on - strand, within HMPREF1078_RS08955 at 389.083 kb on - strand, within HMPREF1078_RS08955 at 389.098 kb on - strand, within HMPREF1078_RS08955 at 389.098 kb on - strand, within HMPREF1078_RS08955 at 389.098 kb on - strand, within HMPREF1078_RS08955 at 389.122 kb on + strand, within HMPREF1078_RS08955 at 389.123 kb on - strand, within HMPREF1078_RS08955 at 389.189 kb on + strand, within HMPREF1078_RS08955 at 389.307 kb on - strand, within HMPREF1078_RS08955 at 389.312 kb on + strand, within HMPREF1078_RS08955 at 389.313 kb on - strand, within HMPREF1078_RS08955 at 389.333 kb on + strand, within HMPREF1078_RS08955 at 389.333 kb on + strand, within HMPREF1078_RS08955 at 389.334 kb on - strand, within HMPREF1078_RS08955 at 389.334 kb on - strand, within HMPREF1078_RS08955 at 389.334 kb on - strand, within HMPREF1078_RS08955 at 389.355 kb on + strand, within HMPREF1078_RS08955 at 389.382 kb on - strand, within HMPREF1078_RS08955 at 389.501 kb on + strand, within HMPREF1078_RS08955 at 389.534 kb on + strand, within HMPREF1078_RS08955 at 389.559 kb on + strand, within HMPREF1078_RS08955 at 389.560 kb on - strand, within HMPREF1078_RS08955 at 389.560 kb on - strand, within HMPREF1078_RS08955 at 389.560 kb on - strand, within HMPREF1078_RS08955 at 389.595 kb on - strand, within HMPREF1078_RS08955 at 389.650 kb on + strand, within HMPREF1078_RS08955 at 389.651 kb on - strand, within HMPREF1078_RS08955 at 389.675 kb on + strand, within HMPREF1078_RS08955 at 389.696 kb on + strand, within HMPREF1078_RS08955 at 389.717 kb on + strand, within HMPREF1078_RS08955 at 389.742 kb on + strand, within HMPREF1078_RS08955 at 389.742 kb on + strand, within HMPREF1078_RS08955 at 389.743 kb on - strand, within HMPREF1078_RS08955 at 389.743 kb on - strand, within HMPREF1078_RS08955 at 389.743 kb on - strand, within HMPREF1078_RS08955 at 389.743 kb on - strand, within HMPREF1078_RS08955 at 389.745 kb on + strand, within HMPREF1078_RS08955 at 389.789 kb on - strand, within HMPREF1078_RS08955 at 389.824 kb on - strand, within HMPREF1078_RS08955
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 10 mg/mL (C) remove 385,924 - -0.4 386,145 + +0.5 386,165 - +0.5 386,185 - +1.4 386,204 + +2.6 386,205 - -0.1 386,205 - -0.1 386,244 - -3.2 386,248 + -0.6 386,249 - -1.7 386,268 - -1.9 386,271 - +0.1 386,274 - -0.1 386,274 - -2.0 386,323 - +0.1 386,323 - -0.2 386,326 + +0.4 386,327 - +0.1 386,328 + +0.2 386,384 - +0.2 386,393 + +1.2 386,397 + -0.5 386,397 + -0.2 386,397 + -2.2 386,397 + +0.2 386,397 + -0.2 386,398 - -0.7 386,398 - -1.3 386,398 - -0.8 386,441 + +0.1 386,441 + +0.8 386,441 + +0.6 386,441 + -0.1 386,441 + +0.2 386,442 - -1.5 386,442 - +1.7 386,442 - +0.1 386,442 - -0.5 386,473 - +0.5 386,502 - -0.3 386,514 - -0.6 386,514 - +0.6 386,517 + +0.1 386,518 - -0.1 386,518 - -0.4 386,518 - -3.2 386,518 - +0.7 386,518 - +1.0 386,538 + +1.3 386,539 - -0.4 386,556 + +1.6 386,557 - -0.3 386,568 - -2.5 386,572 + +0.1 386,601 - +0.2 386,601 - +0.6 386,602 + +0.9 386,635 - +0.2 386,663 + -0.6 386,664 - +0.3 386,700 - +0.8 386,747 + -0.6 386,790 - +0.6 386,793 - -1.7 386,793 - +0.1 386,795 - +0.2 386,802 - -0.8 386,805 - -1.4 386,805 - +0.5 386,805 - +1.4 386,812 - -1.1 386,823 - +1.0 386,823 - +0.2 386,850 - -0.6 386,881 - -2.5 386,881 - -1.4 386,881 - -0.2 386,881 - +0.0 386,884 - +0.6 386,884 - +0.6 386,886 - +0.5 386,886 - +0.4 386,886 - -0.8 386,888 + +0.1 386,889 - -0.1 386,896 - -0.3 386,912 + -0.1 387,038 - -1.7 387,044 - +0.1 387,046 - +1.1 387,046 - -2.1 387,055 + +0.1 387,065 - +0.2 387,088 + -0.5 387,088 + +0.1 387,088 + +0.0 387,088 + +0.6 387,089 - -0.3 387,089 - +1.4 387,089 - +0.9 387,217 - HMPREF1078_RS08950 0.16 -2.4 387,217 - HMPREF1078_RS08950 0.16 +0.1 387,275 - HMPREF1078_RS08950 0.19 +0.2 387,277 - HMPREF1078_RS08950 0.19 -0.4 387,277 - HMPREF1078_RS08950 0.19 -0.2 387,280 + HMPREF1078_RS08950 0.20 -0.2 387,281 - HMPREF1078_RS08950 0.20 +0.5 387,287 - HMPREF1078_RS08950 0.20 +0.1 387,330 - HMPREF1078_RS08950 0.22 -1.2 387,334 - HMPREF1078_RS08950 0.22 -0.2 387,384 - HMPREF1078_RS08950 0.25 +0.2 387,413 + HMPREF1078_RS08950 0.26 -0.5 387,413 + HMPREF1078_RS08950 0.26 -0.1 387,413 + HMPREF1078_RS08950 0.26 -0.5 387,413 + HMPREF1078_RS08950 0.26 +1.0 387,414 - HMPREF1078_RS08950 0.27 -1.6 387,414 - HMPREF1078_RS08950 0.27 -1.8 387,415 + HMPREF1078_RS08950 0.27 +1.8 387,415 + HMPREF1078_RS08950 0.27 -0.2 387,415 + HMPREF1078_RS08950 0.27 +0.6 387,415 + HMPREF1078_RS08950 0.27 -1.3 387,416 - HMPREF1078_RS08950 0.27 +0.8 387,416 - HMPREF1078_RS08950 0.27 -1.4 387,416 - HMPREF1078_RS08950 0.27 -0.9 387,418 - HMPREF1078_RS08950 0.27 +1.3 387,418 - HMPREF1078_RS08950 0.27 -0.4 387,460 + HMPREF1078_RS08950 0.29 +0.3 387,460 + HMPREF1078_RS08950 0.29 +0.5 387,461 - HMPREF1078_RS08950 0.29 +0.0 387,461 - HMPREF1078_RS08950 0.29 -0.6 387,461 - HMPREF1078_RS08950 0.29 -1.8 387,462 + HMPREF1078_RS08950 0.29 -0.9 387,465 + HMPREF1078_RS08950 0.29 -2.6 387,466 - HMPREF1078_RS08950 0.29 +0.9 387,515 - HMPREF1078_RS08950 0.32 +1.0 387,558 + HMPREF1078_RS08950 0.34 +0.0 387,622 - HMPREF1078_RS08950 0.37 +0.3 387,660 - HMPREF1078_RS08950 0.39 -0.6 387,660 - HMPREF1078_RS08950 0.39 -0.3 387,660 - HMPREF1078_RS08950 0.39 -0.0 387,660 - HMPREF1078_RS08950 0.39 -1.6 387,668 - HMPREF1078_RS08950 0.40 -1.8 387,668 - HMPREF1078_RS08950 0.40 -0.9 387,673 - HMPREF1078_RS08950 0.40 +1.6 387,673 - HMPREF1078_RS08950 0.40 +0.4 387,694 + HMPREF1078_RS08950 0.41 -1.5 387,710 - HMPREF1078_RS08950 0.42 -1.3 387,714 + HMPREF1078_RS08950 0.42 +0.5 387,797 - HMPREF1078_RS08950 0.46 +0.2 387,816 + HMPREF1078_RS08950 0.47 +1.3 387,817 - HMPREF1078_RS08950 0.47 +1.5 387,856 - HMPREF1078_RS08950 0.49 +0.9 387,863 - HMPREF1078_RS08950 0.50 -0.2 387,865 - HMPREF1078_RS08950 0.50 -1.4 387,865 - HMPREF1078_RS08950 0.50 -1.6 387,888 - HMPREF1078_RS08950 0.51 -0.6 387,892 - HMPREF1078_RS08950 0.51 +0.9 387,899 - HMPREF1078_RS08950 0.52 -0.9 387,899 - HMPREF1078_RS08950 0.52 +1.0 387,922 - HMPREF1078_RS08950 0.53 -0.8 388,050 - HMPREF1078_RS08950 0.60 -0.3 388,052 - HMPREF1078_RS08950 0.60 +0.2 388,052 - HMPREF1078_RS08950 0.60 -1.0 388,076 + HMPREF1078_RS08950 0.61 +0.2 388,160 - HMPREF1078_RS08950 0.65 -0.2 388,160 - HMPREF1078_RS08950 0.65 +0.2 388,193 - HMPREF1078_RS08950 0.67 -2.1 388,199 - HMPREF1078_RS08950 0.67 -0.7 388,199 - HMPREF1078_RS08950 0.67 -0.9 388,240 - HMPREF1078_RS08950 0.69 -0.2 388,302 - HMPREF1078_RS08950 0.73 -0.0 388,302 - HMPREF1078_RS08950 0.73 -0.5 388,308 - HMPREF1078_RS08950 0.73 +0.4 388,398 - HMPREF1078_RS08950 0.78 -1.1 388,439 - HMPREF1078_RS08950 0.80 -1.7 388,470 - HMPREF1078_RS08950 0.81 +0.3 388,470 - HMPREF1078_RS08950 0.81 -0.3 388,568 - HMPREF1078_RS08950 0.86 -0.8 388,616 - HMPREF1078_RS08950 0.89 -1.0 388,634 - HMPREF1078_RS08950 0.90 -1.9 388,873 - -0.8 388,873 - +1.8 388,873 - +0.7 388,873 - +1.6 388,875 - +0.2 388,875 - -0.4 388,875 - -1.4 388,879 - -0.7 388,879 - -0.1 388,909 - +0.1 388,912 - +0.2 388,992 + +1.9 389,036 + -0.2 389,068 + HMPREF1078_RS08955 0.10 -1.0 389,069 - HMPREF1078_RS08955 0.10 +1.0 389,069 - HMPREF1078_RS08955 0.10 -1.8 389,083 - HMPREF1078_RS08955 0.11 +0.3 389,098 - HMPREF1078_RS08955 0.12 +0.0 389,098 - HMPREF1078_RS08955 0.12 +0.7 389,098 - HMPREF1078_RS08955 0.12 -0.4 389,122 + HMPREF1078_RS08955 0.13 -0.3 389,123 - HMPREF1078_RS08955 0.13 +0.2 389,189 + HMPREF1078_RS08955 0.16 -0.4 389,307 - HMPREF1078_RS08955 0.21 +0.9 389,312 + HMPREF1078_RS08955 0.21 +1.1 389,313 - HMPREF1078_RS08955 0.21 -2.7 389,333 + HMPREF1078_RS08955 0.22 -1.3 389,333 + HMPREF1078_RS08955 0.22 +1.6 389,334 - HMPREF1078_RS08955 0.22 -2.2 389,334 - HMPREF1078_RS08955 0.22 -0.3 389,334 - HMPREF1078_RS08955 0.22 -0.9 389,355 + HMPREF1078_RS08955 0.23 -1.4 389,382 - HMPREF1078_RS08955 0.24 -0.9 389,501 + HMPREF1078_RS08955 0.29 -0.4 389,534 + HMPREF1078_RS08955 0.30 -2.6 389,559 + HMPREF1078_RS08955 0.32 -0.1 389,560 - HMPREF1078_RS08955 0.32 +0.4 389,560 - HMPREF1078_RS08955 0.32 +0.1 389,560 - HMPREF1078_RS08955 0.32 -1.0 389,595 - HMPREF1078_RS08955 0.33 -1.3 389,650 + HMPREF1078_RS08955 0.35 -0.0 389,651 - HMPREF1078_RS08955 0.35 +0.2 389,675 + HMPREF1078_RS08955 0.37 -1.2 389,696 + HMPREF1078_RS08955 0.37 -1.5 389,717 + HMPREF1078_RS08955 0.38 +0.1 389,742 + HMPREF1078_RS08955 0.39 +4.1 389,742 + HMPREF1078_RS08955 0.39 -0.2 389,743 - HMPREF1078_RS08955 0.39 -0.3 389,743 - HMPREF1078_RS08955 0.39 -0.4 389,743 - HMPREF1078_RS08955 0.39 -0.8 389,743 - HMPREF1078_RS08955 0.39 +1.9 389,745 + HMPREF1078_RS08955 0.40 -0.5 389,789 - HMPREF1078_RS08955 0.41 -0.2 389,824 - HMPREF1078_RS08955 0.43 -0.4
Or see this region's nucleotide sequence