Experiment: NAG 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06355 and HMPREF1078_RS06360 are separated by 383 nucleotides HMPREF1078_RS06360 and HMPREF1078_RS06365 are separated by 24 nucleotides
HMPREF1078_RS06355: HMPREF1078_RS06355 - TolB family protein, at 635,463 to 636,386
_RS06355
HMPREF1078_RS06360: HMPREF1078_RS06360 - acyltransferase, at 636,770 to 637,912
_RS06360
HMPREF1078_RS06365: HMPREF1078_RS06365 - AraC family transcriptional regulator, at 637,937 to 639,055
_RS06365
Position (kb) 636
637
638 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 635.771 kb on + strand, within HMPREF1078_RS06355 at 635.811 kb on + strand, within HMPREF1078_RS06355 at 635.812 kb on - strand, within HMPREF1078_RS06355 at 635.868 kb on + strand, within HMPREF1078_RS06355 at 635.868 kb on + strand, within HMPREF1078_RS06355 at 635.868 kb on + strand, within HMPREF1078_RS06355 at 635.869 kb on - strand, within HMPREF1078_RS06355 at 635.932 kb on - strand, within HMPREF1078_RS06355 at 636.030 kb on + strand, within HMPREF1078_RS06355 at 636.032 kb on + strand, within HMPREF1078_RS06355 at 636.176 kb on + strand, within HMPREF1078_RS06355 at 636.178 kb on + strand, within HMPREF1078_RS06355 at 636.183 kb on + strand, within HMPREF1078_RS06355 at 636.224 kb on + strand, within HMPREF1078_RS06355 at 636.278 kb on - strand, within HMPREF1078_RS06355 at 636.336 kb on - strand at 636.357 kb on + strand at 636.426 kb on + strand at 636.450 kb on + strand at 636.453 kb on - strand at 636.519 kb on + strand at 636.519 kb on + strand at 636.520 kb on - strand at 636.520 kb on - strand at 636.526 kb on + strand at 636.533 kb on + strand at 636.533 kb on + strand at 636.538 kb on + strand at 636.538 kb on + strand at 636.703 kb on + strand at 636.729 kb on + strand at 636.730 kb on - strand at 636.741 kb on + strand at 636.742 kb on - strand at 636.776 kb on + strand at 636.776 kb on + strand at 636.777 kb on - strand at 636.777 kb on - strand at 636.782 kb on - strand at 636.817 kb on + strand at 636.842 kb on - strand at 636.842 kb on - strand at 636.842 kb on - strand at 636.842 kb on - strand at 636.875 kb on - strand at 636.902 kb on - strand, within HMPREF1078_RS06360 at 636.902 kb on - strand, within HMPREF1078_RS06360 at 636.903 kb on + strand, within HMPREF1078_RS06360 at 636.904 kb on - strand, within HMPREF1078_RS06360 at 636.936 kb on + strand, within HMPREF1078_RS06360 at 636.994 kb on + strand, within HMPREF1078_RS06360 at 637.001 kb on + strand, within HMPREF1078_RS06360 at 637.001 kb on + strand, within HMPREF1078_RS06360 at 637.059 kb on + strand, within HMPREF1078_RS06360 at 637.060 kb on - strand, within HMPREF1078_RS06360 at 637.063 kb on + strand, within HMPREF1078_RS06360 at 637.063 kb on + strand, within HMPREF1078_RS06360 at 637.063 kb on + strand, within HMPREF1078_RS06360 at 637.064 kb on - strand, within HMPREF1078_RS06360 at 637.064 kb on - strand, within HMPREF1078_RS06360 at 637.111 kb on + strand, within HMPREF1078_RS06360 at 637.113 kb on + strand, within HMPREF1078_RS06360 at 637.127 kb on + strand, within HMPREF1078_RS06360 at 637.128 kb on - strand, within HMPREF1078_RS06360 at 637.128 kb on - strand, within HMPREF1078_RS06360 at 637.133 kb on - strand, within HMPREF1078_RS06360 at 637.140 kb on + strand, within HMPREF1078_RS06360 at 637.212 kb on + strand, within HMPREF1078_RS06360 at 637.213 kb on - strand, within HMPREF1078_RS06360 at 637.328 kb on - strand, within HMPREF1078_RS06360 at 637.361 kb on + strand, within HMPREF1078_RS06360 at 637.361 kb on - strand, within HMPREF1078_RS06360 at 637.361 kb on - strand, within HMPREF1078_RS06360 at 637.412 kb on - strand, within HMPREF1078_RS06360 at 637.414 kb on - strand, within HMPREF1078_RS06360 at 637.420 kb on - strand, within HMPREF1078_RS06360 at 637.441 kb on + strand, within HMPREF1078_RS06360 at 637.441 kb on + strand, within HMPREF1078_RS06360 at 637.441 kb on + strand, within HMPREF1078_RS06360 at 637.441 kb on + strand, within HMPREF1078_RS06360 at 637.441 kb on + strand, within HMPREF1078_RS06360 at 637.441 kb on + strand, within HMPREF1078_RS06360 at 637.442 kb on - strand, within HMPREF1078_RS06360 at 637.442 kb on - strand, within HMPREF1078_RS06360 at 637.443 kb on + strand, within HMPREF1078_RS06360 at 637.443 kb on + strand, within HMPREF1078_RS06360 at 637.444 kb on - strand, within HMPREF1078_RS06360 at 637.444 kb on - strand, within HMPREF1078_RS06360 at 637.462 kb on - strand, within HMPREF1078_RS06360 at 637.575 kb on - strand, within HMPREF1078_RS06360 at 637.575 kb on - strand, within HMPREF1078_RS06360 at 637.584 kb on - strand, within HMPREF1078_RS06360 at 637.657 kb on + strand, within HMPREF1078_RS06360 at 637.657 kb on + strand, within HMPREF1078_RS06360 at 637.659 kb on + strand, within HMPREF1078_RS06360 at 637.876 kb on + strand at 637.894 kb on + strand at 637.915 kb on + strand at 637.921 kb on - strand at 637.930 kb on + strand at 637.931 kb on - strand at 637.934 kb on + strand at 637.935 kb on - strand at 637.939 kb on - strand at 637.945 kb on + strand at 637.946 kb on - strand at 637.951 kb on + strand at 637.952 kb on - strand at 637.976 kb on - strand at 638.002 kb on + strand at 638.002 kb on + strand at 638.042 kb on + strand at 638.043 kb on - strand at 638.043 kb on - strand at 638.044 kb on + strand at 638.244 kb on - strand, within HMPREF1078_RS06365 at 638.256 kb on + strand, within HMPREF1078_RS06365 at 638.256 kb on + strand, within HMPREF1078_RS06365 at 638.351 kb on + strand, within HMPREF1078_RS06365 at 638.352 kb on - strand, within HMPREF1078_RS06365 at 638.371 kb on + strand, within HMPREF1078_RS06365 at 638.371 kb on + strand, within HMPREF1078_RS06365 at 638.383 kb on - strand, within HMPREF1078_RS06365 at 638.385 kb on + strand, within HMPREF1078_RS06365 at 638.386 kb on - strand, within HMPREF1078_RS06365 at 638.421 kb on + strand, within HMPREF1078_RS06365 at 638.421 kb on + strand, within HMPREF1078_RS06365 at 638.422 kb on - strand, within HMPREF1078_RS06365 at 638.425 kb on + strand, within HMPREF1078_RS06365 at 638.435 kb on - strand, within HMPREF1078_RS06365 at 638.435 kb on - strand, within HMPREF1078_RS06365 at 638.447 kb on + strand, within HMPREF1078_RS06365 at 638.447 kb on + strand, within HMPREF1078_RS06365 at 638.448 kb on - strand, within HMPREF1078_RS06365 at 638.457 kb on + strand, within HMPREF1078_RS06365 at 638.458 kb on - strand, within HMPREF1078_RS06365 at 638.467 kb on - strand, within HMPREF1078_RS06365 at 638.499 kb on - strand, within HMPREF1078_RS06365 at 638.564 kb on - strand, within HMPREF1078_RS06365 at 638.576 kb on + strand, within HMPREF1078_RS06365 at 638.583 kb on + strand, within HMPREF1078_RS06365 at 638.600 kb on - strand, within HMPREF1078_RS06365 at 638.600 kb on - strand, within HMPREF1078_RS06365 at 638.655 kb on + strand, within HMPREF1078_RS06365 at 638.672 kb on + strand, within HMPREF1078_RS06365 at 638.672 kb on + strand, within HMPREF1078_RS06365 at 638.682 kb on + strand, within HMPREF1078_RS06365 at 638.682 kb on + strand, within HMPREF1078_RS06365 at 638.682 kb on + strand, within HMPREF1078_RS06365 at 638.682 kb on + strand, within HMPREF1078_RS06365 at 638.683 kb on - strand, within HMPREF1078_RS06365 at 638.683 kb on - strand, within HMPREF1078_RS06365 at 638.686 kb on + strand, within HMPREF1078_RS06365 at 638.687 kb on - strand, within HMPREF1078_RS06365 at 638.687 kb on - strand, within HMPREF1078_RS06365 at 638.722 kb on - strand, within HMPREF1078_RS06365 at 638.753 kb on - strand, within HMPREF1078_RS06365 at 638.757 kb on - strand, within HMPREF1078_RS06365 at 638.809 kb on - strand, within HMPREF1078_RS06365 at 638.850 kb on - strand, within HMPREF1078_RS06365 at 638.851 kb on + strand, within HMPREF1078_RS06365 at 638.852 kb on - strand, within HMPREF1078_RS06365 at 638.907 kb on - strand, within HMPREF1078_RS06365
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 10 mg/mL (C) remove 635,771 + HMPREF1078_RS06355 0.33 -0.2 635,811 + HMPREF1078_RS06355 0.38 -0.3 635,812 - HMPREF1078_RS06355 0.38 -0.7 635,868 + HMPREF1078_RS06355 0.44 +0.1 635,868 + HMPREF1078_RS06355 0.44 -3.1 635,868 + HMPREF1078_RS06355 0.44 +0.5 635,869 - HMPREF1078_RS06355 0.44 +0.4 635,932 - HMPREF1078_RS06355 0.51 -0.7 636,030 + HMPREF1078_RS06355 0.61 -0.2 636,032 + HMPREF1078_RS06355 0.62 +0.7 636,176 + HMPREF1078_RS06355 0.77 -0.7 636,178 + HMPREF1078_RS06355 0.77 -3.8 636,183 + HMPREF1078_RS06355 0.78 -0.3 636,224 + HMPREF1078_RS06355 0.82 +0.5 636,278 - HMPREF1078_RS06355 0.88 -0.1 636,336 - +0.8 636,357 + -0.7 636,426 + +0.4 636,450 + -0.5 636,453 - -0.7 636,519 + -1.1 636,519 + -0.1 636,520 - +2.2 636,520 - +0.6 636,526 + +0.0 636,533 + +0.8 636,533 + +2.1 636,538 + -1.0 636,538 + +0.4 636,703 + +0.2 636,729 + +1.6 636,730 - +0.0 636,741 + +0.7 636,742 - -1.4 636,776 + +0.1 636,776 + +0.8 636,777 - +0.6 636,777 - +0.6 636,782 - +0.1 636,817 + -1.9 636,842 - -0.5 636,842 - -4.3 636,842 - -0.4 636,842 - +0.6 636,875 - -1.8 636,902 - HMPREF1078_RS06360 0.12 +0.4 636,902 - HMPREF1078_RS06360 0.12 -0.3 636,903 + HMPREF1078_RS06360 0.12 -0.4 636,904 - HMPREF1078_RS06360 0.12 -0.1 636,936 + HMPREF1078_RS06360 0.15 +1.9 636,994 + HMPREF1078_RS06360 0.20 -1.2 637,001 + HMPREF1078_RS06360 0.20 -1.2 637,001 + HMPREF1078_RS06360 0.20 -1.4 637,059 + HMPREF1078_RS06360 0.25 -0.6 637,060 - HMPREF1078_RS06360 0.25 -1.2 637,063 + HMPREF1078_RS06360 0.26 -1.8 637,063 + HMPREF1078_RS06360 0.26 -0.7 637,063 + HMPREF1078_RS06360 0.26 -0.4 637,064 - HMPREF1078_RS06360 0.26 -0.1 637,064 - HMPREF1078_RS06360 0.26 +0.6 637,111 + HMPREF1078_RS06360 0.30 -0.3 637,113 + HMPREF1078_RS06360 0.30 +0.5 637,127 + HMPREF1078_RS06360 0.31 -0.5 637,128 - HMPREF1078_RS06360 0.31 -2.5 637,128 - HMPREF1078_RS06360 0.31 -0.4 637,133 - HMPREF1078_RS06360 0.32 -0.4 637,140 + HMPREF1078_RS06360 0.32 -1.1 637,212 + HMPREF1078_RS06360 0.39 -0.9 637,213 - HMPREF1078_RS06360 0.39 -0.5 637,328 - HMPREF1078_RS06360 0.49 +0.0 637,361 + HMPREF1078_RS06360 0.52 -0.1 637,361 - HMPREF1078_RS06360 0.52 +0.1 637,361 - HMPREF1078_RS06360 0.52 -0.4 637,412 - HMPREF1078_RS06360 0.56 -0.9 637,414 - HMPREF1078_RS06360 0.56 +0.4 637,420 - HMPREF1078_RS06360 0.57 +0.5 637,441 + HMPREF1078_RS06360 0.59 -0.2 637,441 + HMPREF1078_RS06360 0.59 -0.2 637,441 + HMPREF1078_RS06360 0.59 -1.7 637,441 + HMPREF1078_RS06360 0.59 -0.1 637,441 + HMPREF1078_RS06360 0.59 -2.7 637,441 + HMPREF1078_RS06360 0.59 +0.8 637,442 - HMPREF1078_RS06360 0.59 -1.3 637,442 - HMPREF1078_RS06360 0.59 +0.3 637,443 + HMPREF1078_RS06360 0.59 +0.7 637,443 + HMPREF1078_RS06360 0.59 +0.5 637,444 - HMPREF1078_RS06360 0.59 +0.4 637,444 - HMPREF1078_RS06360 0.59 +0.6 637,462 - HMPREF1078_RS06360 0.61 -0.9 637,575 - HMPREF1078_RS06360 0.70 -0.4 637,575 - HMPREF1078_RS06360 0.70 +0.7 637,584 - HMPREF1078_RS06360 0.71 +0.7 637,657 + HMPREF1078_RS06360 0.78 -1.3 637,657 + HMPREF1078_RS06360 0.78 +0.8 637,659 + HMPREF1078_RS06360 0.78 -1.6 637,876 + -0.2 637,894 + +0.9 637,915 + -0.6 637,921 - -1.6 637,930 + +0.7 637,931 - -2.6 637,934 + +0.3 637,935 - +0.3 637,939 - -1.0 637,945 + +0.8 637,946 - +0.7 637,951 + -1.2 637,952 - -1.0 637,976 - -1.0 638,002 + -1.0 638,002 + +0.4 638,042 + -0.3 638,043 - -3.0 638,043 - -1.3 638,044 + +1.6 638,244 - HMPREF1078_RS06365 0.27 +2.5 638,256 + HMPREF1078_RS06365 0.29 -0.9 638,256 + HMPREF1078_RS06365 0.29 -1.3 638,351 + HMPREF1078_RS06365 0.37 -0.0 638,352 - HMPREF1078_RS06365 0.37 +0.4 638,371 + HMPREF1078_RS06365 0.39 +1.4 638,371 + HMPREF1078_RS06365 0.39 -1.5 638,383 - HMPREF1078_RS06365 0.40 -0.6 638,385 + HMPREF1078_RS06365 0.40 +1.5 638,386 - HMPREF1078_RS06365 0.40 -0.6 638,421 + HMPREF1078_RS06365 0.43 -2.4 638,421 + HMPREF1078_RS06365 0.43 -2.3 638,422 - HMPREF1078_RS06365 0.43 +1.6 638,425 + HMPREF1078_RS06365 0.44 -2.1 638,435 - HMPREF1078_RS06365 0.45 +0.1 638,435 - HMPREF1078_RS06365 0.45 -2.0 638,447 + HMPREF1078_RS06365 0.46 -4.0 638,447 + HMPREF1078_RS06365 0.46 -1.9 638,448 - HMPREF1078_RS06365 0.46 -1.5 638,457 + HMPREF1078_RS06365 0.46 -1.5 638,458 - HMPREF1078_RS06365 0.47 -1.2 638,467 - HMPREF1078_RS06365 0.47 +0.4 638,499 - HMPREF1078_RS06365 0.50 -3.5 638,564 - HMPREF1078_RS06365 0.56 +1.3 638,576 + HMPREF1078_RS06365 0.57 -1.4 638,583 + HMPREF1078_RS06365 0.58 -0.7 638,600 - HMPREF1078_RS06365 0.59 -0.9 638,600 - HMPREF1078_RS06365 0.59 +0.2 638,655 + HMPREF1078_RS06365 0.64 +0.1 638,672 + HMPREF1078_RS06365 0.66 -2.5 638,672 + HMPREF1078_RS06365 0.66 +1.6 638,682 + HMPREF1078_RS06365 0.67 +0.5 638,682 + HMPREF1078_RS06365 0.67 -1.9 638,682 + HMPREF1078_RS06365 0.67 +1.1 638,682 + HMPREF1078_RS06365 0.67 +0.2 638,683 - HMPREF1078_RS06365 0.67 -0.5 638,683 - HMPREF1078_RS06365 0.67 -1.0 638,686 + HMPREF1078_RS06365 0.67 +1.0 638,687 - HMPREF1078_RS06365 0.67 -3.8 638,687 - HMPREF1078_RS06365 0.67 -0.2 638,722 - HMPREF1078_RS06365 0.70 +0.8 638,753 - HMPREF1078_RS06365 0.73 +0.1 638,757 - HMPREF1078_RS06365 0.73 -1.0 638,809 - HMPREF1078_RS06365 0.78 -0.9 638,850 - HMPREF1078_RS06365 0.82 -1.2 638,851 + HMPREF1078_RS06365 0.82 -2.5 638,852 - HMPREF1078_RS06365 0.82 -2.4 638,907 - HMPREF1078_RS06365 0.87 -0.4
Or see this region's nucleotide sequence