Strain Fitness in Pseudomonas aeruginosa PA14 around IKLFDK_17065

Experiment: phiC75A_S

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIKLFDK_17060 and IKLFDK_17065 overlap by 4 nucleotidesIKLFDK_17065 and IKLFDK_17070 overlap by 1 nucleotides IKLFDK_17060: IKLFDK_17060 - non-ribosomal peptide synthetase, at 3,727,317 to 3,734,375 _17060 IKLFDK_17065: IKLFDK_17065 - FAD-dependent monooxygenase, at 3,734,372 to 3,735,538 _17065 IKLFDK_17070: IKLFDK_17070 - Condensation domain-containing protein, at 3,735,538 to 3,736,863 _17070 Position (kb) 3734 3735 3736Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3733.582 kb on + strand, within IKLFDK_17060at 3733.582 kb on + strand, within IKLFDK_17060at 3733.582 kb on + strand, within IKLFDK_17060at 3733.582 kb on + strand, within IKLFDK_17060at 3733.582 kb on + strand, within IKLFDK_17060at 3733.582 kb on + strand, within IKLFDK_17060at 3733.582 kb on + strand, within IKLFDK_17060at 3733.583 kb on - strand, within IKLFDK_17060at 3733.583 kb on - strand, within IKLFDK_17060at 3733.583 kb on - strand, within IKLFDK_17060at 3733.583 kb on - strand, within IKLFDK_17060at 3733.583 kb on - strand, within IKLFDK_17060at 3733.583 kb on - strand, within IKLFDK_17060at 3733.583 kb on - strand, within IKLFDK_17060at 3733.583 kb on - strand, within IKLFDK_17060at 3733.590 kb on + strand, within IKLFDK_17060at 3733.590 kb on + strand, within IKLFDK_17060at 3733.590 kb on + strand, within IKLFDK_17060at 3733.591 kb on - strand, within IKLFDK_17060at 3733.591 kb on - strand, within IKLFDK_17060at 3733.591 kb on - strand, within IKLFDK_17060at 3733.630 kb on + strand, within IKLFDK_17060at 3733.630 kb on + strand, within IKLFDK_17060at 3733.630 kb on + strand, within IKLFDK_17060at 3733.630 kb on + strand, within IKLFDK_17060at 3733.631 kb on - strand, within IKLFDK_17060at 3733.631 kb on - strand, within IKLFDK_17060at 3733.631 kb on - strand, within IKLFDK_17060at 3733.631 kb on - strand, within IKLFDK_17060at 3733.631 kb on - strand, within IKLFDK_17060at 3733.631 kb on - strand, within IKLFDK_17060at 3733.631 kb on - strand, within IKLFDK_17060at 3733.632 kb on + strand, within IKLFDK_17060at 3733.632 kb on + strand, within IKLFDK_17060at 3733.632 kb on + strand, within IKLFDK_17060at 3733.632 kb on + strand, within IKLFDK_17060at 3733.632 kb on + strand, within IKLFDK_17060at 3733.632 kb on + strand, within IKLFDK_17060at 3733.632 kb on + strand, within IKLFDK_17060at 3733.632 kb on + strand, within IKLFDK_17060at 3733.633 kb on - strand, within IKLFDK_17060at 3733.633 kb on - strand, within IKLFDK_17060at 3733.633 kb on - strand, within IKLFDK_17060at 3733.633 kb on - strand, within IKLFDK_17060at 3733.633 kb on - strand, within IKLFDK_17060at 3733.633 kb on - strand, within IKLFDK_17060at 3733.633 kb on - strand, within IKLFDK_17060at 3733.633 kb on - strand, within IKLFDK_17060at 3733.667 kb on + strand, within IKLFDK_17060at 3733.668 kb on - strand, within IKLFDK_17060at 3733.704 kb on + strandat 3733.704 kb on + strandat 3733.743 kb on + strandat 3733.743 kb on + strandat 3733.743 kb on + strandat 3733.743 kb on + strandat 3733.743 kb on + strandat 3733.743 kb on + strandat 3733.744 kb on - strandat 3733.744 kb on - strandat 3733.744 kb on - strandat 3733.744 kb on - strandat 3733.746 kb on + strandat 3733.746 kb on + strandat 3733.746 kb on + strandat 3733.747 kb on - strandat 3733.747 kb on - strandat 3733.782 kb on + strandat 3733.783 kb on - strandat 3733.911 kb on + strandat 3733.912 kb on - strandat 3733.912 kb on - strandat 3733.912 kb on - strandat 3734.026 kb on + strandat 3734.027 kb on - strandat 3734.067 kb on + strandat 3734.067 kb on + strandat 3734.068 kb on - strandat 3734.068 kb on - strandat 3734.301 kb on + strandat 3734.301 kb on + strandat 3734.301 kb on + strandat 3734.301 kb on + strandat 3734.301 kb on + strandat 3734.302 kb on - strandat 3734.302 kb on - strandat 3734.471 kb on + strandat 3734.472 kb on - strandat 3734.909 kb on + strand, within IKLFDK_17065at 3734.909 kb on + strand, within IKLFDK_17065at 3734.909 kb on + strand, within IKLFDK_17065at 3734.909 kb on + strand, within IKLFDK_17065at 3734.909 kb on + strand, within IKLFDK_17065at 3734.910 kb on - strand, within IKLFDK_17065at 3734.910 kb on - strand, within IKLFDK_17065at 3734.910 kb on - strand, within IKLFDK_17065at 3734.910 kb on - strand, within IKLFDK_17065at 3734.963 kb on + strand, within IKLFDK_17065at 3734.963 kb on + strand, within IKLFDK_17065at 3734.963 kb on + strand, within IKLFDK_17065at 3734.964 kb on - strand, within IKLFDK_17065at 3734.975 kb on + strand, within IKLFDK_17065at 3734.975 kb on + strand, within IKLFDK_17065at 3734.976 kb on - strand, within IKLFDK_17065at 3734.976 kb on - strand, within IKLFDK_17065at 3734.976 kb on - strand, within IKLFDK_17065at 3735.029 kb on + strand, within IKLFDK_17065at 3735.029 kb on + strand, within IKLFDK_17065at 3735.029 kb on + strand, within IKLFDK_17065at 3735.029 kb on + strand, within IKLFDK_17065at 3735.030 kb on - strand, within IKLFDK_17065at 3735.030 kb on - strand, within IKLFDK_17065at 3735.030 kb on - strand, within IKLFDK_17065at 3735.030 kb on - strand, within IKLFDK_17065at 3735.030 kb on - strand, within IKLFDK_17065at 3735.107 kb on + strand, within IKLFDK_17065at 3735.107 kb on + strand, within IKLFDK_17065at 3735.464 kb on + strandat 3735.464 kb on + strandat 3735.464 kb on + strandat 3735.465 kb on - strandat 3735.465 kb on - strandat 3735.548 kb on + strandat 3735.548 kb on + strandat 3735.548 kb on + strandat 3735.549 kb on - strandat 3735.549 kb on - strandat 3735.549 kb on - strandat 3735.580 kb on + strandat 3735.946 kb on - strand, within IKLFDK_17070at 3736.256 kb on + strand, within IKLFDK_17070at 3736.257 kb on - strand, within IKLFDK_17070at 3736.388 kb on + strand, within IKLFDK_17070at 3736.388 kb on + strand, within IKLFDK_17070at 3736.388 kb on + strand, within IKLFDK_17070at 3736.388 kb on + strand, within IKLFDK_17070at 3736.388 kb on + strand, within IKLFDK_17070at 3736.389 kb on - strand, within IKLFDK_17070at 3736.389 kb on - strand, within IKLFDK_17070at 3736.389 kb on - strand, within IKLFDK_17070at 3736.389 kb on - strand, within IKLFDK_17070at 3736.389 kb on - strand, within IKLFDK_17070at 3736.389 kb on - strand, within IKLFDK_17070at 3736.389 kb on - strand, within IKLFDK_17070at 3736.389 kb on - strand, within IKLFDK_17070at 3736.396 kb on + strand, within IKLFDK_17070at 3736.396 kb on + strand, within IKLFDK_17070at 3736.396 kb on + strand, within IKLFDK_17070at 3736.396 kb on + strand, within IKLFDK_17070at 3736.396 kb on + strand, within IKLFDK_17070at 3736.396 kb on + strand, within IKLFDK_17070at 3736.396 kb on + strand, within IKLFDK_17070at 3736.396 kb on + strand, within IKLFDK_17070at 3736.396 kb on + strand, within IKLFDK_17070at 3736.396 kb on + strand, within IKLFDK_17070at 3736.396 kb on + strand, within IKLFDK_17070at 3736.396 kb on + strand, within IKLFDK_17070at 3736.396 kb on + strand, within IKLFDK_17070at 3736.396 kb on + strand, within IKLFDK_17070at 3736.397 kb on - strand, within IKLFDK_17070at 3736.397 kb on - strand, within IKLFDK_17070at 3736.397 kb on - strand, within IKLFDK_17070at 3736.397 kb on - strand, within IKLFDK_17070at 3736.397 kb on - strand, within IKLFDK_17070at 3736.397 kb on - strand, within IKLFDK_17070at 3736.397 kb on - strand, within IKLFDK_17070at 3736.397 kb on - strand, within IKLFDK_17070at 3736.397 kb on - strand, within IKLFDK_17070at 3736.397 kb on - strand, within IKLFDK_17070

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phiC75A_S
remove
3,733,582 + IKLFDK_17060 0.89 -0.6
3,733,582 + IKLFDK_17060 0.89 -0.4
3,733,582 + IKLFDK_17060 0.89 -1.0
3,733,582 + IKLFDK_17060 0.89 +0.4
3,733,582 + IKLFDK_17060 0.89 -0.2
3,733,582 + IKLFDK_17060 0.89 -0.6
3,733,582 + IKLFDK_17060 0.89 +1.7
3,733,583 - IKLFDK_17060 0.89 +1.7
3,733,583 - IKLFDK_17060 0.89 +0.5
3,733,583 - IKLFDK_17060 0.89 -0.3
3,733,583 - IKLFDK_17060 0.89 -0.5
3,733,583 - IKLFDK_17060 0.89 -0.4
3,733,583 - IKLFDK_17060 0.89 -0.8
3,733,583 - IKLFDK_17060 0.89 -0.4
3,733,583 - IKLFDK_17060 0.89 -0.3
3,733,590 + IKLFDK_17060 0.89 -0.3
3,733,590 + IKLFDK_17060 0.89 -2.1
3,733,590 + IKLFDK_17060 0.89 +0.9
3,733,591 - IKLFDK_17060 0.89 -0.2
3,733,591 - IKLFDK_17060 0.89 +0.1
3,733,591 - IKLFDK_17060 0.89 -0.4
3,733,630 + IKLFDK_17060 0.89 -1.1
3,733,630 + IKLFDK_17060 0.89 -1.5
3,733,630 + IKLFDK_17060 0.89 -0.6
3,733,630 + IKLFDK_17060 0.89 -1.2
3,733,631 - IKLFDK_17060 0.89 -2.2
3,733,631 - IKLFDK_17060 0.89 +0.8
3,733,631 - IKLFDK_17060 0.89 -0.2
3,733,631 - IKLFDK_17060 0.89 +1.8
3,733,631 - IKLFDK_17060 0.89 -1.6
3,733,631 - IKLFDK_17060 0.89 -1.2
3,733,631 - IKLFDK_17060 0.89 -1.9
3,733,632 + IKLFDK_17060 0.89 -0.1
3,733,632 + IKLFDK_17060 0.89 +0.1
3,733,632 + IKLFDK_17060 0.89 +1.0
3,733,632 + IKLFDK_17060 0.89 +0.1
3,733,632 + IKLFDK_17060 0.89 -0.7
3,733,632 + IKLFDK_17060 0.89 +0.6
3,733,632 + IKLFDK_17060 0.89 -0.7
3,733,632 + IKLFDK_17060 0.89 +0.3
3,733,633 - IKLFDK_17060 0.89 -0.1
3,733,633 - IKLFDK_17060 0.89 -0.2
3,733,633 - IKLFDK_17060 0.89 -0.5
3,733,633 - IKLFDK_17060 0.89 -1.0
3,733,633 - IKLFDK_17060 0.89 +0.8
3,733,633 - IKLFDK_17060 0.89 -0.6
3,733,633 - IKLFDK_17060 0.89 -0.2
3,733,633 - IKLFDK_17060 0.89 +1.1
3,733,667 + IKLFDK_17060 0.90 -0.4
3,733,668 - IKLFDK_17060 0.90 -0.9
3,733,704 + +3.6
3,733,704 + -0.9
3,733,743 + +0.6
3,733,743 + +0.8
3,733,743 + +2.2
3,733,743 + -0.3
3,733,743 + -0.7
3,733,743 + +0.8
3,733,744 - -1.2
3,733,744 - +0.6
3,733,744 - -0.2
3,733,744 - -0.5
3,733,746 + -0.7
3,733,746 + -0.4
3,733,746 + +0.3
3,733,747 - -0.5
3,733,747 - -0.0
3,733,782 + -0.4
3,733,783 - -1.0
3,733,911 + +0.8
3,733,912 - +0.6
3,733,912 - -0.1
3,733,912 - -0.9
3,734,026 + +0.2
3,734,027 - +0.4
3,734,067 + +1.1
3,734,067 + -1.0
3,734,068 - -0.9
3,734,068 - -1.2
3,734,301 + -0.7
3,734,301 + +0.1
3,734,301 + +0.9
3,734,301 + -0.5
3,734,301 + +0.3
3,734,302 - -0.8
3,734,302 - -0.5
3,734,471 + -2.2
3,734,472 - -0.0
3,734,909 + IKLFDK_17065 0.46 -0.9
3,734,909 + IKLFDK_17065 0.46 +1.4
3,734,909 + IKLFDK_17065 0.46 -0.2
3,734,909 + IKLFDK_17065 0.46 +0.0
3,734,909 + IKLFDK_17065 0.46 -0.0
3,734,910 - IKLFDK_17065 0.46 +1.2
3,734,910 - IKLFDK_17065 0.46 -0.7
3,734,910 - IKLFDK_17065 0.46 +1.1
3,734,910 - IKLFDK_17065 0.46 +0.2
3,734,963 + IKLFDK_17065 0.51 -0.6
3,734,963 + IKLFDK_17065 0.51 +0.2
3,734,963 + IKLFDK_17065 0.51 -0.4
3,734,964 - IKLFDK_17065 0.51 -1.0
3,734,975 + IKLFDK_17065 0.52 +0.5
3,734,975 + IKLFDK_17065 0.52 +0.8
3,734,976 - IKLFDK_17065 0.52 -0.2
3,734,976 - IKLFDK_17065 0.52 +0.1
3,734,976 - IKLFDK_17065 0.52 -1.3
3,735,029 + IKLFDK_17065 0.56 -0.4
3,735,029 + IKLFDK_17065 0.56 +0.8
3,735,029 + IKLFDK_17065 0.56 -0.2
3,735,029 + IKLFDK_17065 0.56 +0.5
3,735,030 - IKLFDK_17065 0.56 -1.3
3,735,030 - IKLFDK_17065 0.56 -1.9
3,735,030 - IKLFDK_17065 0.56 +0.3
3,735,030 - IKLFDK_17065 0.56 -0.3
3,735,030 - IKLFDK_17065 0.56 -1.5
3,735,107 + IKLFDK_17065 0.63 -1.3
3,735,107 + IKLFDK_17065 0.63 +0.1
3,735,464 + +0.1
3,735,464 + +1.7
3,735,464 + +0.8
3,735,465 - +0.8
3,735,465 - -1.0
3,735,548 + -1.7
3,735,548 + +0.9
3,735,548 + -0.3
3,735,549 - -1.3
3,735,549 - -0.2
3,735,549 - -0.6
3,735,580 + +0.1
3,735,946 - IKLFDK_17070 0.31 -1.3
3,736,256 + IKLFDK_17070 0.54 -1.4
3,736,257 - IKLFDK_17070 0.54 -0.6
3,736,388 + IKLFDK_17070 0.64 +2.2
3,736,388 + IKLFDK_17070 0.64 -1.1
3,736,388 + IKLFDK_17070 0.64 +1.6
3,736,388 + IKLFDK_17070 0.64 -0.2
3,736,388 + IKLFDK_17070 0.64 -0.3
3,736,389 - IKLFDK_17070 0.64 -0.0
3,736,389 - IKLFDK_17070 0.64 -1.9
3,736,389 - IKLFDK_17070 0.64 -0.8
3,736,389 - IKLFDK_17070 0.64 -1.2
3,736,389 - IKLFDK_17070 0.64 -2.1
3,736,389 - IKLFDK_17070 0.64 +1.4
3,736,389 - IKLFDK_17070 0.64 +1.3
3,736,389 - IKLFDK_17070 0.64 -0.9
3,736,396 + IKLFDK_17070 0.65 -0.8
3,736,396 + IKLFDK_17070 0.65 +0.6
3,736,396 + IKLFDK_17070 0.65 -0.3
3,736,396 + IKLFDK_17070 0.65 +0.5
3,736,396 + IKLFDK_17070 0.65 +0.8
3,736,396 + IKLFDK_17070 0.65 +0.6
3,736,396 + IKLFDK_17070 0.65 +1.0
3,736,396 + IKLFDK_17070 0.65 +0.3
3,736,396 + IKLFDK_17070 0.65 +0.2
3,736,396 + IKLFDK_17070 0.65 -0.6
3,736,396 + IKLFDK_17070 0.65 +0.5
3,736,396 + IKLFDK_17070 0.65 -1.2
3,736,396 + IKLFDK_17070 0.65 +0.3
3,736,396 + IKLFDK_17070 0.65 +0.3
3,736,397 - IKLFDK_17070 0.65 -0.2
3,736,397 - IKLFDK_17070 0.65 -1.3
3,736,397 - IKLFDK_17070 0.65 +1.1
3,736,397 - IKLFDK_17070 0.65 -0.1
3,736,397 - IKLFDK_17070 0.65 +2.0
3,736,397 - IKLFDK_17070 0.65 -0.4
3,736,397 - IKLFDK_17070 0.65 -0.2
3,736,397 - IKLFDK_17070 0.65 +0.1
3,736,397 - IKLFDK_17070 0.65 -0.2
3,736,397 - IKLFDK_17070 0.65 -0.5

Or see this region's nucleotide sequence