Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.2 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JOY50_RS17170 and motA are separated by 130 nucleotides motA and motB are separated by 3 nucleotides
JOY50_RS17170: JOY50_RS17170 - HDOD domain-containing protein, at 16,439 to 17,974
_RS17170
JOY50_RS17175: motA - flagellar motor stator protein MotA, at 18,105 to 18,956
motA
JOY50_RS17180: motB - flagellar motor protein MotB, at 18,960 to 19,994
motB
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.114 kb on - strand, within JOY50_RS17170 at 17.114 kb on - strand, within JOY50_RS17170 at 17.118 kb on + strand, within JOY50_RS17170 at 17.119 kb on - strand, within JOY50_RS17170 at 17.162 kb on + strand, within JOY50_RS17170 at 17.176 kb on + strand, within JOY50_RS17170 at 17.176 kb on + strand, within JOY50_RS17170 at 17.184 kb on - strand, within JOY50_RS17170 at 17.197 kb on + strand, within JOY50_RS17170 at 17.202 kb on + strand, within JOY50_RS17170 at 17.202 kb on + strand, within JOY50_RS17170 at 17.205 kb on - strand, within JOY50_RS17170 at 17.210 kb on - strand, within JOY50_RS17170 at 17.210 kb on - strand, within JOY50_RS17170 at 17.210 kb on - strand, within JOY50_RS17170 at 17.210 kb on - strand, within JOY50_RS17170 at 17.215 kb on + strand, within JOY50_RS17170 at 17.257 kb on + strand, within JOY50_RS17170 at 17.272 kb on + strand, within JOY50_RS17170 at 17.291 kb on + strand, within JOY50_RS17170 at 17.297 kb on - strand, within JOY50_RS17170 at 17.311 kb on - strand, within JOY50_RS17170 at 17.332 kb on + strand, within JOY50_RS17170 at 17.334 kb on + strand, within JOY50_RS17170 at 17.340 kb on - strand, within JOY50_RS17170 at 17.342 kb on - strand, within JOY50_RS17170 at 17.344 kb on + strand, within JOY50_RS17170 at 17.344 kb on + strand, within JOY50_RS17170 at 17.352 kb on - strand, within JOY50_RS17170 at 17.352 kb on - strand, within JOY50_RS17170 at 17.352 kb on - strand, within JOY50_RS17170 at 17.372 kb on - strand, within JOY50_RS17170 at 17.372 kb on - strand, within JOY50_RS17170 at 17.372 kb on - strand, within JOY50_RS17170 at 17.374 kb on - strand, within JOY50_RS17170 at 17.382 kb on + strand, within JOY50_RS17170 at 17.382 kb on - strand, within JOY50_RS17170 at 17.394 kb on + strand, within JOY50_RS17170 at 17.421 kb on + strand, within JOY50_RS17170 at 17.421 kb on + strand, within JOY50_RS17170 at 17.429 kb on - strand, within JOY50_RS17170 at 17.429 kb on - strand, within JOY50_RS17170 at 17.429 kb on - strand, within JOY50_RS17170 at 17.445 kb on + strand, within JOY50_RS17170 at 17.453 kb on - strand, within JOY50_RS17170 at 17.455 kb on - strand, within JOY50_RS17170 at 17.472 kb on - strand, within JOY50_RS17170 at 17.472 kb on - strand, within JOY50_RS17170 at 17.482 kb on + strand, within JOY50_RS17170 at 17.482 kb on + strand, within JOY50_RS17170 at 17.482 kb on + strand, within JOY50_RS17170 at 17.482 kb on + strand, within JOY50_RS17170 at 17.482 kb on + strand, within JOY50_RS17170 at 17.482 kb on + strand, within JOY50_RS17170 at 17.487 kb on + strand, within JOY50_RS17170 at 17.487 kb on + strand, within JOY50_RS17170 at 17.487 kb on + strand, within JOY50_RS17170 at 17.487 kb on + strand, within JOY50_RS17170 at 17.487 kb on + strand, within JOY50_RS17170 at 17.490 kb on - strand, within JOY50_RS17170 at 17.490 kb on - strand, within JOY50_RS17170 at 17.490 kb on - strand, within JOY50_RS17170 at 17.490 kb on - strand, within JOY50_RS17170 at 17.495 kb on - strand, within JOY50_RS17170 at 17.517 kb on + strand, within JOY50_RS17170 at 17.522 kb on + strand, within JOY50_RS17170 at 17.525 kb on - strand, within JOY50_RS17170 at 17.596 kb on - strand, within JOY50_RS17170 at 17.608 kb on + strand, within JOY50_RS17170 at 17.670 kb on + strand, within JOY50_RS17170 at 17.670 kb on + strand, within JOY50_RS17170 at 17.678 kb on - strand, within JOY50_RS17170 at 17.688 kb on - strand, within JOY50_RS17170 at 17.698 kb on + strand, within JOY50_RS17170 at 17.751 kb on + strand, within JOY50_RS17170 at 17.754 kb on - strand, within JOY50_RS17170 at 17.799 kb on + strand, within JOY50_RS17170 at 17.802 kb on - strand, within JOY50_RS17170 at 17.869 kb on + strand at 17.879 kb on - strand at 17.914 kb on + strand at 17.919 kb on + strand at 17.927 kb on - strand at 18.188 kb on + strand at 18.245 kb on + strand, within motA at 18.245 kb on + strand, within motA at 18.258 kb on - strand, within motA at 18.265 kb on + strand, within motA at 18.318 kb on - strand, within motA at 18.325 kb on + strand, within motA at 18.325 kb on + strand, within motA at 18.333 kb on + strand, within motA at 18.344 kb on + strand, within motA at 18.345 kb on + strand, within motA at 18.424 kb on - strand, within motA at 18.447 kb on + strand, within motA at 18.464 kb on + strand, within motA at 18.528 kb on + strand, within motA at 18.528 kb on + strand, within motA at 18.557 kb on - strand, within motA at 18.642 kb on + strand, within motA at 18.642 kb on + strand, within motA at 18.642 kb on + strand, within motA at 18.642 kb on + strand, within motA at 18.642 kb on + strand, within motA at 18.642 kb on + strand, within motA at 18.650 kb on - strand, within motA at 18.712 kb on + strand, within motA at 18.712 kb on + strand, within motA at 18.717 kb on + strand, within motA at 18.720 kb on - strand, within motA at 18.722 kb on + strand, within motA at 18.781 kb on - strand, within motA at 18.824 kb on + strand, within motA at 18.824 kb on + strand, within motA at 18.824 kb on + strand, within motA at 18.832 kb on - strand, within motA at 18.865 kb on - strand, within motA at 18.894 kb on + strand at 18.901 kb on + strand at 18.901 kb on + strand at 18.901 kb on + strand at 18.901 kb on + strand at 18.901 kb on + strand at 18.909 kb on - strand at 18.974 kb on + strand at 18.981 kb on + strand at 18.982 kb on - strand at 19.072 kb on + strand, within motB at 19.235 kb on + strand, within motB at 19.240 kb on + strand, within motB at 19.259 kb on + strand, within motB at 19.276 kb on + strand, within motB at 19.281 kb on + strand, within motB at 19.286 kb on + strand, within motB at 19.286 kb on + strand, within motB at 19.286 kb on + strand, within motB at 19.286 kb on + strand, within motB at 19.286 kb on + strand, within motB at 19.294 kb on - strand, within motB at 19.354 kb on + strand, within motB at 19.356 kb on + strand, within motB at 19.390 kb on + strand, within motB at 19.397 kb on - strand, within motB at 19.410 kb on + strand, within motB at 19.443 kb on + strand, within motB at 19.517 kb on + strand, within motB at 19.525 kb on + strand, within motB at 19.534 kb on - strand, within motB at 19.628 kb on + strand, within motB at 19.668 kb on - strand, within motB at 19.679 kb on - strand, within motB at 19.695 kb on + strand, within motB at 19.702 kb on - strand, within motB at 19.721 kb on - strand, within motB at 19.793 kb on + strand, within motB at 19.803 kb on + strand, within motB at 19.808 kb on - strand, within motB at 19.866 kb on - strand, within motB at 19.871 kb on + strand, within motB at 19.889 kb on - strand, within motB at 19.889 kb on - strand, within motB at 19.889 kb on - strand, within motB at 19.896 kb on - strand at 19.908 kb on + strand at 19.921 kb on + strand at 19.948 kb on + strand at 19.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.2 X remove 17,114 - JOY50_RS17170 0.44 -0.7 17,114 - JOY50_RS17170 0.44 +0.0 17,118 + JOY50_RS17170 0.44 -0.3 17,119 - JOY50_RS17170 0.44 +0.3 17,162 + JOY50_RS17170 0.47 +0.2 17,176 + JOY50_RS17170 0.48 -0.4 17,176 + JOY50_RS17170 0.48 +0.3 17,184 - JOY50_RS17170 0.49 +0.2 17,197 + JOY50_RS17170 0.49 -0.8 17,202 + JOY50_RS17170 0.50 +0.1 17,202 + JOY50_RS17170 0.50 -1.0 17,205 - JOY50_RS17170 0.50 +0.4 17,210 - JOY50_RS17170 0.50 +0.1 17,210 - JOY50_RS17170 0.50 +0.4 17,210 - JOY50_RS17170 0.50 +0.1 17,210 - JOY50_RS17170 0.50 -0.4 17,215 + JOY50_RS17170 0.51 +0.1 17,257 + JOY50_RS17170 0.53 +0.7 17,272 + JOY50_RS17170 0.54 -1.3 17,291 + JOY50_RS17170 0.55 -1.1 17,297 - JOY50_RS17170 0.56 -0.8 17,311 - JOY50_RS17170 0.57 -0.6 17,332 + JOY50_RS17170 0.58 +0.5 17,334 + JOY50_RS17170 0.58 -0.1 17,340 - JOY50_RS17170 0.59 -0.2 17,342 - JOY50_RS17170 0.59 +0.2 17,344 + JOY50_RS17170 0.59 -1.0 17,344 + JOY50_RS17170 0.59 -0.4 17,352 - JOY50_RS17170 0.59 +0.1 17,352 - JOY50_RS17170 0.59 +0.5 17,352 - JOY50_RS17170 0.59 -0.1 17,372 - JOY50_RS17170 0.61 +0.0 17,372 - JOY50_RS17170 0.61 -1.8 17,372 - JOY50_RS17170 0.61 -0.5 17,374 - JOY50_RS17170 0.61 -0.8 17,382 + JOY50_RS17170 0.61 -0.5 17,382 - JOY50_RS17170 0.61 +0.7 17,394 + JOY50_RS17170 0.62 -0.4 17,421 + JOY50_RS17170 0.64 +0.2 17,421 + JOY50_RS17170 0.64 -0.4 17,429 - JOY50_RS17170 0.64 +1.0 17,429 - JOY50_RS17170 0.64 +1.1 17,429 - JOY50_RS17170 0.64 -1.0 17,445 + JOY50_RS17170 0.65 -0.3 17,453 - JOY50_RS17170 0.66 -1.7 17,455 - JOY50_RS17170 0.66 +1.8 17,472 - JOY50_RS17170 0.67 -0.1 17,472 - JOY50_RS17170 0.67 -0.5 17,482 + JOY50_RS17170 0.68 -0.0 17,482 + JOY50_RS17170 0.68 -0.6 17,482 + JOY50_RS17170 0.68 -0.2 17,482 + JOY50_RS17170 0.68 +0.5 17,482 + JOY50_RS17170 0.68 +0.1 17,482 + JOY50_RS17170 0.68 +0.1 17,487 + JOY50_RS17170 0.68 -0.0 17,487 + JOY50_RS17170 0.68 -0.8 17,487 + JOY50_RS17170 0.68 -1.0 17,487 + JOY50_RS17170 0.68 -0.2 17,487 + JOY50_RS17170 0.68 +0.5 17,490 - JOY50_RS17170 0.68 +0.2 17,490 - JOY50_RS17170 0.68 -0.1 17,490 - JOY50_RS17170 0.68 -0.0 17,490 - JOY50_RS17170 0.68 -1.1 17,495 - JOY50_RS17170 0.69 -1.0 17,517 + JOY50_RS17170 0.70 -0.2 17,522 + JOY50_RS17170 0.71 +0.0 17,525 - JOY50_RS17170 0.71 -0.5 17,596 - JOY50_RS17170 0.75 -0.1 17,608 + JOY50_RS17170 0.76 -0.4 17,670 + JOY50_RS17170 0.80 -1.3 17,670 + JOY50_RS17170 0.80 +0.3 17,678 - JOY50_RS17170 0.81 +0.2 17,688 - JOY50_RS17170 0.81 +0.2 17,698 + JOY50_RS17170 0.82 +0.5 17,751 + JOY50_RS17170 0.85 +0.5 17,754 - JOY50_RS17170 0.86 +0.2 17,799 + JOY50_RS17170 0.89 -1.3 17,802 - JOY50_RS17170 0.89 +0.7 17,869 + +0.6 17,879 - +2.5 17,914 + -0.8 17,919 + -0.7 17,927 - -0.9 18,188 + -1.1 18,245 + motA JOY50_RS17175 0.16 -0.4 18,245 + motA JOY50_RS17175 0.16 +1.2 18,258 - motA JOY50_RS17175 0.18 -1.4 18,265 + motA JOY50_RS17175 0.19 -0.1 18,318 - motA JOY50_RS17175 0.25 +0.0 18,325 + motA JOY50_RS17175 0.26 +0.5 18,325 + motA JOY50_RS17175 0.26 +0.0 18,333 + motA JOY50_RS17175 0.27 +0.3 18,344 + motA JOY50_RS17175 0.28 +0.0 18,345 + motA JOY50_RS17175 0.28 -0.1 18,424 - motA JOY50_RS17175 0.37 +0.2 18,447 + motA JOY50_RS17175 0.40 +0.1 18,464 + motA JOY50_RS17175 0.42 +0.7 18,528 + motA JOY50_RS17175 0.50 +0.1 18,528 + motA JOY50_RS17175 0.50 -0.4 18,557 - motA JOY50_RS17175 0.53 +0.1 18,642 + motA JOY50_RS17175 0.63 +0.1 18,642 + motA JOY50_RS17175 0.63 -0.0 18,642 + motA JOY50_RS17175 0.63 +1.0 18,642 + motA JOY50_RS17175 0.63 -0.1 18,642 + motA JOY50_RS17175 0.63 +0.5 18,642 + motA JOY50_RS17175 0.63 +1.0 18,650 - motA JOY50_RS17175 0.64 -0.8 18,712 + motA JOY50_RS17175 0.71 +1.0 18,712 + motA JOY50_RS17175 0.71 -0.9 18,717 + motA JOY50_RS17175 0.72 +0.3 18,720 - motA JOY50_RS17175 0.72 +1.6 18,722 + motA JOY50_RS17175 0.72 +0.3 18,781 - motA JOY50_RS17175 0.79 -0.3 18,824 + motA JOY50_RS17175 0.84 -0.5 18,824 + motA JOY50_RS17175 0.84 -1.2 18,824 + motA JOY50_RS17175 0.84 +0.5 18,832 - motA JOY50_RS17175 0.85 +0.2 18,865 - motA JOY50_RS17175 0.89 -1.5 18,894 + +0.5 18,901 + +1.0 18,901 + +1.1 18,901 + +0.2 18,901 + -1.9 18,901 + -0.5 18,909 - -0.5 18,974 + +0.8 18,981 + +1.0 18,982 - -0.7 19,072 + motB JOY50_RS17180 0.11 +0.3 19,235 + motB JOY50_RS17180 0.27 +0.3 19,240 + motB JOY50_RS17180 0.27 -0.1 19,259 + motB JOY50_RS17180 0.29 -1.0 19,276 + motB JOY50_RS17180 0.31 +0.1 19,281 + motB JOY50_RS17180 0.31 +0.2 19,286 + motB JOY50_RS17180 0.31 +0.0 19,286 + motB JOY50_RS17180 0.31 +0.0 19,286 + motB JOY50_RS17180 0.31 -0.3 19,286 + motB JOY50_RS17180 0.31 +0.7 19,286 + motB JOY50_RS17180 0.31 -0.7 19,294 - motB JOY50_RS17180 0.32 -0.1 19,354 + motB JOY50_RS17180 0.38 -1.7 19,356 + motB JOY50_RS17180 0.38 +0.2 19,390 + motB JOY50_RS17180 0.42 +2.6 19,397 - motB JOY50_RS17180 0.42 -1.3 19,410 + motB JOY50_RS17180 0.43 -0.3 19,443 + motB JOY50_RS17180 0.47 +0.1 19,517 + motB JOY50_RS17180 0.54 +0.6 19,525 + motB JOY50_RS17180 0.55 +0.2 19,534 - motB JOY50_RS17180 0.55 -1.4 19,628 + motB JOY50_RS17180 0.65 +0.0 19,668 - motB JOY50_RS17180 0.68 +0.2 19,679 - motB JOY50_RS17180 0.69 +0.5 19,695 + motB JOY50_RS17180 0.71 -0.6 19,702 - motB JOY50_RS17180 0.72 -1.0 19,721 - motB JOY50_RS17180 0.74 +1.6 19,793 + motB JOY50_RS17180 0.80 -0.3 19,803 + motB JOY50_RS17180 0.81 +0.1 19,808 - motB JOY50_RS17180 0.82 +0.1 19,866 - motB JOY50_RS17180 0.88 +0.0 19,871 + motB JOY50_RS17180 0.88 -1.3 19,889 - motB JOY50_RS17180 0.90 +0.4 19,889 - motB JOY50_RS17180 0.90 -1.0 19,889 - motB JOY50_RS17180 0.90 +0.0 19,896 - +0.7 19,908 + -0.5 19,921 + +0.2 19,948 + -0.2 19,956 - +0.0
Or see this region's nucleotide sequence