Experiment: D-Xylose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17670 and HMPREF1078_RS17675 are separated by 12 nucleotides HMPREF1078_RS17675 and HMPREF1078_RS17680 are separated by 28 nucleotides HMPREF1078_RS17680 and HMPREF1078_RS17685 are separated by 15 nucleotides HMPREF1078_RS17685 and HMPREF1078_RS17690 are separated by 4 nucleotides
HMPREF1078_RS17670: HMPREF1078_RS17670 - alpha-ribazole phosphatase, at 99,958 to 100,491
_RS17670
HMPREF1078_RS17675: HMPREF1078_RS17675 - adenosylcobinamide-GDP ribazoletransferase, at 100,504 to 101,256
_RS17675
HMPREF1078_RS17680: HMPREF1078_RS17680 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 101,285 to 102,322
_RS17680
HMPREF1078_RS17685: HMPREF1078_RS17685 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 102,338 to 102,853
_RS17685
HMPREF1078_RS17690: HMPREF1078_RS17690 - S4 domain-containing protein, at 102,858 to 103,463
_RS17690
Position (kb) 101
102
103 Strain fitness (log2 ratio) -2
-1
0
1 at 100.359 kb on + strand, within HMPREF1078_RS17670 at 100.382 kb on - strand, within HMPREF1078_RS17670 at 100.436 kb on + strand, within HMPREF1078_RS17670 at 100.468 kb on - strand at 100.498 kb on + strand at 100.499 kb on - strand at 100.505 kb on + strand at 100.507 kb on + strand at 100.542 kb on - strand at 100.542 kb on - strand at 100.590 kb on + strand, within HMPREF1078_RS17675 at 100.600 kb on + strand, within HMPREF1078_RS17675 at 100.652 kb on - strand, within HMPREF1078_RS17675 at 100.722 kb on + strand, within HMPREF1078_RS17675 at 100.722 kb on + strand, within HMPREF1078_RS17675 at 100.723 kb on - strand, within HMPREF1078_RS17675 at 100.723 kb on - strand, within HMPREF1078_RS17675 at 100.787 kb on + strand, within HMPREF1078_RS17675 at 100.891 kb on - strand, within HMPREF1078_RS17675 at 100.893 kb on - strand, within HMPREF1078_RS17675 at 100.894 kb on + strand, within HMPREF1078_RS17675 at 100.956 kb on + strand, within HMPREF1078_RS17675 at 100.968 kb on + strand, within HMPREF1078_RS17675 at 101.030 kb on - strand, within HMPREF1078_RS17675 at 101.030 kb on - strand, within HMPREF1078_RS17675 at 101.030 kb on - strand, within HMPREF1078_RS17675 at 101.030 kb on - strand, within HMPREF1078_RS17675 at 101.069 kb on - strand, within HMPREF1078_RS17675 at 101.072 kb on - strand, within HMPREF1078_RS17675 at 101.092 kb on + strand, within HMPREF1078_RS17675 at 101.092 kb on + strand, within HMPREF1078_RS17675 at 101.275 kb on + strand at 101.411 kb on + strand, within HMPREF1078_RS17680 at 101.429 kb on + strand, within HMPREF1078_RS17680 at 101.429 kb on + strand, within HMPREF1078_RS17680 at 101.429 kb on + strand, within HMPREF1078_RS17680 at 101.430 kb on - strand, within HMPREF1078_RS17680 at 101.430 kb on - strand, within HMPREF1078_RS17680 at 101.430 kb on - strand, within HMPREF1078_RS17680 at 101.435 kb on - strand, within HMPREF1078_RS17680 at 101.441 kb on + strand, within HMPREF1078_RS17680 at 101.442 kb on - strand, within HMPREF1078_RS17680 at 101.442 kb on - strand, within HMPREF1078_RS17680 at 101.479 kb on - strand, within HMPREF1078_RS17680 at 101.488 kb on - strand, within HMPREF1078_RS17680 at 101.636 kb on + strand, within HMPREF1078_RS17680 at 101.665 kb on - strand, within HMPREF1078_RS17680 at 101.693 kb on - strand, within HMPREF1078_RS17680 at 101.694 kb on + strand, within HMPREF1078_RS17680 at 101.694 kb on + strand, within HMPREF1078_RS17680 at 101.694 kb on + strand, within HMPREF1078_RS17680 at 101.695 kb on - strand, within HMPREF1078_RS17680 at 101.698 kb on + strand, within HMPREF1078_RS17680 at 101.699 kb on - strand, within HMPREF1078_RS17680 at 101.920 kb on - strand, within HMPREF1078_RS17680 at 102.074 kb on + strand, within HMPREF1078_RS17680 at 102.075 kb on - strand, within HMPREF1078_RS17680 at 102.144 kb on + strand, within HMPREF1078_RS17680 at 102.144 kb on + strand, within HMPREF1078_RS17680 at 102.145 kb on - strand, within HMPREF1078_RS17680 at 102.145 kb on - strand, within HMPREF1078_RS17680 at 102.145 kb on - strand, within HMPREF1078_RS17680 at 102.145 kb on - strand, within HMPREF1078_RS17680 at 102.149 kb on - strand, within HMPREF1078_RS17680 at 102.326 kb on - strand at 102.328 kb on - strand at 102.336 kb on + strand at 102.344 kb on + strand at 102.521 kb on - strand, within HMPREF1078_RS17685 at 102.763 kb on + strand, within HMPREF1078_RS17685 at 102.839 kb on - strand at 102.839 kb on - strand at 102.859 kb on + strand at 103.105 kb on + strand, within HMPREF1078_RS17690 at 103.105 kb on + strand, within HMPREF1078_RS17690 at 103.106 kb on - strand, within HMPREF1078_RS17690 at 103.120 kb on - strand, within HMPREF1078_RS17690 at 103.138 kb on - strand, within HMPREF1078_RS17690 at 103.305 kb on + strand, within HMPREF1078_RS17690 at 103.305 kb on + strand, within HMPREF1078_RS17690 at 103.305 kb on + strand, within HMPREF1078_RS17690 at 103.306 kb on - strand, within HMPREF1078_RS17690 at 103.306 kb on - strand, within HMPREF1078_RS17690
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mg/mL (C) remove 100,359 + HMPREF1078_RS17670 0.75 -0.7 100,382 - HMPREF1078_RS17670 0.79 +0.4 100,436 + HMPREF1078_RS17670 0.90 +1.0 100,468 - -1.9 100,498 + -0.0 100,499 - -0.3 100,505 + -0.1 100,507 + +0.0 100,542 - -1.9 100,542 - -1.9 100,590 + HMPREF1078_RS17675 0.11 -0.2 100,600 + HMPREF1078_RS17675 0.13 -0.6 100,652 - HMPREF1078_RS17675 0.20 -1.2 100,722 + HMPREF1078_RS17675 0.29 -0.7 100,722 + HMPREF1078_RS17675 0.29 -0.6 100,723 - HMPREF1078_RS17675 0.29 +0.1 100,723 - HMPREF1078_RS17675 0.29 -1.6 100,787 + HMPREF1078_RS17675 0.38 -0.5 100,891 - HMPREF1078_RS17675 0.51 -1.1 100,893 - HMPREF1078_RS17675 0.52 -0.9 100,894 + HMPREF1078_RS17675 0.52 -0.9 100,956 + HMPREF1078_RS17675 0.60 -0.3 100,968 + HMPREF1078_RS17675 0.62 +0.4 101,030 - HMPREF1078_RS17675 0.70 -2.2 101,030 - HMPREF1078_RS17675 0.70 -0.6 101,030 - HMPREF1078_RS17675 0.70 +0.8 101,030 - HMPREF1078_RS17675 0.70 -0.2 101,069 - HMPREF1078_RS17675 0.75 -1.5 101,072 - HMPREF1078_RS17675 0.75 +0.8 101,092 + HMPREF1078_RS17675 0.78 -1.6 101,092 + HMPREF1078_RS17675 0.78 -1.6 101,275 + -0.1 101,411 + HMPREF1078_RS17680 0.12 +0.3 101,429 + HMPREF1078_RS17680 0.14 -1.4 101,429 + HMPREF1078_RS17680 0.14 -0.9 101,429 + HMPREF1078_RS17680 0.14 -1.6 101,430 - HMPREF1078_RS17680 0.14 +0.4 101,430 - HMPREF1078_RS17680 0.14 -0.1 101,430 - HMPREF1078_RS17680 0.14 -1.2 101,435 - HMPREF1078_RS17680 0.14 -1.2 101,441 + HMPREF1078_RS17680 0.15 -2.5 101,442 - HMPREF1078_RS17680 0.15 +0.2 101,442 - HMPREF1078_RS17680 0.15 -1.2 101,479 - HMPREF1078_RS17680 0.19 -2.0 101,488 - HMPREF1078_RS17680 0.20 -0.2 101,636 + HMPREF1078_RS17680 0.34 -1.1 101,665 - HMPREF1078_RS17680 0.37 +0.8 101,693 - HMPREF1078_RS17680 0.39 +0.4 101,694 + HMPREF1078_RS17680 0.39 -1.7 101,694 + HMPREF1078_RS17680 0.39 +0.4 101,694 + HMPREF1078_RS17680 0.39 -0.2 101,695 - HMPREF1078_RS17680 0.39 -0.7 101,698 + HMPREF1078_RS17680 0.40 -0.2 101,699 - HMPREF1078_RS17680 0.40 -0.5 101,920 - HMPREF1078_RS17680 0.61 +0.4 102,074 + HMPREF1078_RS17680 0.76 -1.6 102,075 - HMPREF1078_RS17680 0.76 +0.8 102,144 + HMPREF1078_RS17680 0.83 +0.4 102,144 + HMPREF1078_RS17680 0.83 -1.3 102,145 - HMPREF1078_RS17680 0.83 -2.1 102,145 - HMPREF1078_RS17680 0.83 -0.6 102,145 - HMPREF1078_RS17680 0.83 -0.1 102,145 - HMPREF1078_RS17680 0.83 -2.6 102,149 - HMPREF1078_RS17680 0.83 -1.7 102,326 - -0.2 102,328 - +0.9 102,336 + -1.5 102,344 + -1.2 102,521 - HMPREF1078_RS17685 0.35 -2.5 102,763 + HMPREF1078_RS17685 0.82 +0.4 102,839 - -0.4 102,839 - -2.6 102,859 + -0.1 103,105 + HMPREF1078_RS17690 0.41 -2.7 103,105 + HMPREF1078_RS17690 0.41 -1.7 103,106 - HMPREF1078_RS17690 0.41 +0.2 103,120 - HMPREF1078_RS17690 0.43 +0.1 103,138 - HMPREF1078_RS17690 0.46 +0.2 103,305 + HMPREF1078_RS17690 0.74 -2.4 103,305 + HMPREF1078_RS17690 0.74 +0.3 103,305 + HMPREF1078_RS17690 0.74 -2.7 103,306 - HMPREF1078_RS17690 0.74 -0.7 103,306 - HMPREF1078_RS17690 0.74 -1.1
Or see this region's nucleotide sequence