Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS17220

Experiment: D-Xylose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS17210 and HMPREF1078_RS17215 are separated by 294 nucleotidesHMPREF1078_RS17215 and HMPREF1078_RS17220 overlap by 4 nucleotidesHMPREF1078_RS17220 and HMPREF1078_RS17225 are separated by 109 nucleotides HMPREF1078_RS17210: HMPREF1078_RS17210 - ABC transporter ATP-binding protein, at 158,569 to 160,416 _RS17210 HMPREF1078_RS17215: HMPREF1078_RS17215 - radical SAM-associated putative lipoprotein, at 160,711 to 161,187 _RS17215 HMPREF1078_RS17220: HMPREF1078_RS17220 - TIGR04133 family radical SAM/SPASM protein, at 161,184 to 162,257 _RS17220 HMPREF1078_RS17225: HMPREF1078_RS17225 - DUF4091 domain-containing protein, at 162,367 to 164,142 _RS17225 Position (kb) 161 162 163Strain fitness (log2 ratio) -2 -1 0 1 2at 160.506 kb on + strandat 160.556 kb on + strandat 160.557 kb on - strandat 160.557 kb on - strandat 160.617 kb on + strandat 160.625 kb on + strandat 160.626 kb on - strandat 160.627 kb on + strandat 160.630 kb on + strandat 160.633 kb on - strandat 160.671 kb on - strandat 160.672 kb on + strandat 160.685 kb on - strandat 160.686 kb on + strandat 160.689 kb on + strandat 160.704 kb on + strandat 160.736 kb on + strandat 160.769 kb on + strand, within HMPREF1078_RS17215at 160.769 kb on + strand, within HMPREF1078_RS17215at 160.770 kb on - strand, within HMPREF1078_RS17215at 160.770 kb on - strand, within HMPREF1078_RS17215at 160.770 kb on - strand, within HMPREF1078_RS17215at 160.819 kb on + strand, within HMPREF1078_RS17215at 160.819 kb on + strand, within HMPREF1078_RS17215at 160.820 kb on - strand, within HMPREF1078_RS17215at 160.820 kb on - strand, within HMPREF1078_RS17215at 160.824 kb on + strand, within HMPREF1078_RS17215at 160.824 kb on + strand, within HMPREF1078_RS17215at 161.027 kb on + strand, within HMPREF1078_RS17215at 161.039 kb on + strand, within HMPREF1078_RS17215at 161.039 kb on + strand, within HMPREF1078_RS17215at 161.062 kb on + strand, within HMPREF1078_RS17215at 161.085 kb on + strand, within HMPREF1078_RS17215at 161.154 kb on - strandat 161.222 kb on - strandat 161.222 kb on - strandat 161.227 kb on + strandat 161.420 kb on + strand, within HMPREF1078_RS17220at 161.796 kb on - strand, within HMPREF1078_RS17220at 161.911 kb on + strand, within HMPREF1078_RS17220at 161.912 kb on - strand, within HMPREF1078_RS17220at 162.026 kb on + strand, within HMPREF1078_RS17220at 162.026 kb on + strand, within HMPREF1078_RS17220at 162.027 kb on - strand, within HMPREF1078_RS17220at 162.072 kb on - strand, within HMPREF1078_RS17220at 162.121 kb on - strand, within HMPREF1078_RS17220at 162.342 kb on + strandat 162.381 kb on + strandat 162.381 kb on + strandat 162.466 kb on - strandat 162.624 kb on + strand, within HMPREF1078_RS17225at 162.624 kb on + strand, within HMPREF1078_RS17225at 162.625 kb on - strand, within HMPREF1078_RS17225at 162.625 kb on - strand, within HMPREF1078_RS17225at 162.638 kb on + strand, within HMPREF1078_RS17225at 162.652 kb on - strand, within HMPREF1078_RS17225at 162.671 kb on + strand, within HMPREF1078_RS17225at 162.672 kb on - strand, within HMPREF1078_RS17225at 162.743 kb on + strand, within HMPREF1078_RS17225at 162.744 kb on - strand, within HMPREF1078_RS17225at 162.748 kb on + strand, within HMPREF1078_RS17225at 162.748 kb on + strand, within HMPREF1078_RS17225at 162.749 kb on - strand, within HMPREF1078_RS17225at 162.749 kb on - strand, within HMPREF1078_RS17225at 162.749 kb on - strand, within HMPREF1078_RS17225at 162.849 kb on + strand, within HMPREF1078_RS17225at 162.850 kb on - strand, within HMPREF1078_RS17225at 162.906 kb on - strand, within HMPREF1078_RS17225at 162.906 kb on - strand, within HMPREF1078_RS17225at 162.937 kb on + strand, within HMPREF1078_RS17225at 162.937 kb on + strand, within HMPREF1078_RS17225at 162.938 kb on - strand, within HMPREF1078_RS17225at 162.938 kb on - strand, within HMPREF1078_RS17225at 162.938 kb on - strand, within HMPREF1078_RS17225at 162.939 kb on + strand, within HMPREF1078_RS17225at 162.978 kb on + strand, within HMPREF1078_RS17225at 162.993 kb on - strand, within HMPREF1078_RS17225at 163.242 kb on + strand, within HMPREF1078_RS17225

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose 10 mg/mL (C)
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160,506 + -0.4
160,556 + +0.8
160,557 - -0.6
160,557 - -0.7
160,617 + +1.0
160,625 + -0.2
160,626 - +0.8
160,627 + +0.5
160,630 + -1.0
160,633 - +0.1
160,671 - -1.4
160,672 + +1.8
160,685 - -1.3
160,686 + +0.3
160,689 + -0.9
160,704 + -1.4
160,736 + -0.8
160,769 + HMPREF1078_RS17215 0.12 -0.6
160,769 + HMPREF1078_RS17215 0.12 +0.3
160,770 - HMPREF1078_RS17215 0.12 +0.1
160,770 - HMPREF1078_RS17215 0.12 +0.6
160,770 - HMPREF1078_RS17215 0.12 -1.2
160,819 + HMPREF1078_RS17215 0.23 -1.3
160,819 + HMPREF1078_RS17215 0.23 +0.5
160,820 - HMPREF1078_RS17215 0.23 -2.6
160,820 - HMPREF1078_RS17215 0.23 -1.4
160,824 + HMPREF1078_RS17215 0.24 -0.0
160,824 + HMPREF1078_RS17215 0.24 +0.4
161,027 + HMPREF1078_RS17215 0.66 +0.8
161,039 + HMPREF1078_RS17215 0.69 -0.1
161,039 + HMPREF1078_RS17215 0.69 +0.6
161,062 + HMPREF1078_RS17215 0.74 -0.7
161,085 + HMPREF1078_RS17215 0.78 -0.2
161,154 - -0.9
161,222 - -0.6
161,222 - +0.4
161,227 + +2.0
161,420 + HMPREF1078_RS17220 0.22 -0.3
161,796 - HMPREF1078_RS17220 0.57 -0.3
161,911 + HMPREF1078_RS17220 0.68 -1.2
161,912 - HMPREF1078_RS17220 0.68 -0.5
162,026 + HMPREF1078_RS17220 0.78 -1.5
162,026 + HMPREF1078_RS17220 0.78 +0.5
162,027 - HMPREF1078_RS17220 0.78 -0.4
162,072 - HMPREF1078_RS17220 0.83 -0.2
162,121 - HMPREF1078_RS17220 0.87 -0.0
162,342 + +0.1
162,381 + +0.8
162,381 + +1.2
162,466 - -0.0
162,624 + HMPREF1078_RS17225 0.14 -0.1
162,624 + HMPREF1078_RS17225 0.14 +0.1
162,625 - HMPREF1078_RS17225 0.15 -0.1
162,625 - HMPREF1078_RS17225 0.15 -1.0
162,638 + HMPREF1078_RS17225 0.15 +1.8
162,652 - HMPREF1078_RS17225 0.16 -0.2
162,671 + HMPREF1078_RS17225 0.17 -0.1
162,672 - HMPREF1078_RS17225 0.17 -0.0
162,743 + HMPREF1078_RS17225 0.21 +0.2
162,744 - HMPREF1078_RS17225 0.21 +1.1
162,748 + HMPREF1078_RS17225 0.21 -1.6
162,748 + HMPREF1078_RS17225 0.21 +1.0
162,749 - HMPREF1078_RS17225 0.22 -1.6
162,749 - HMPREF1078_RS17225 0.22 -1.6
162,749 - HMPREF1078_RS17225 0.22 +1.5
162,849 + HMPREF1078_RS17225 0.27 -0.1
162,850 - HMPREF1078_RS17225 0.27 +0.1
162,906 - HMPREF1078_RS17225 0.30 +0.7
162,906 - HMPREF1078_RS17225 0.30 -1.8
162,937 + HMPREF1078_RS17225 0.32 +0.3
162,937 + HMPREF1078_RS17225 0.32 +2.2
162,938 - HMPREF1078_RS17225 0.32 -0.9
162,938 - HMPREF1078_RS17225 0.32 +0.7
162,938 - HMPREF1078_RS17225 0.32 -0.5
162,939 + HMPREF1078_RS17225 0.32 +0.2
162,978 + HMPREF1078_RS17225 0.34 -0.4
162,993 - HMPREF1078_RS17225 0.35 +0.1
163,242 + HMPREF1078_RS17225 0.49 -0.0

Or see this region's nucleotide sequence