Experiment: D-Xylose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11355 and HMPREF1078_RS11360 are separated by 584 nucleotides HMPREF1078_RS11360 and HMPREF1078_RS11365 are separated by 265 nucleotides
HMPREF1078_RS11355: HMPREF1078_RS11355 - DEAD/DEAH box helicase family protein, at 189,636 to 191,213
_RS11355
HMPREF1078_RS11360: HMPREF1078_RS11360 - JAB domain-containing protein, at 191,798 to 192,250
_RS11360
HMPREF1078_RS11365: HMPREF1078_RS11365 - tyrosine-type recombinase/integrase, at 192,516 to 193,103
_RS11365
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1
2 at 190.824 kb on + strand, within HMPREF1078_RS11355 at 190.824 kb on + strand, within HMPREF1078_RS11355 at 190.825 kb on - strand, within HMPREF1078_RS11355 at 190.834 kb on - strand, within HMPREF1078_RS11355 at 190.889 kb on - strand, within HMPREF1078_RS11355 at 190.889 kb on - strand, within HMPREF1078_RS11355 at 190.890 kb on + strand, within HMPREF1078_RS11355 at 190.891 kb on - strand, within HMPREF1078_RS11355 at 190.898 kb on + strand, within HMPREF1078_RS11355 at 190.898 kb on + strand, within HMPREF1078_RS11355 at 190.898 kb on + strand, within HMPREF1078_RS11355 at 190.909 kb on - strand, within HMPREF1078_RS11355 at 190.913 kb on + strand, within HMPREF1078_RS11355 at 190.913 kb on + strand, within HMPREF1078_RS11355 at 190.913 kb on + strand, within HMPREF1078_RS11355 at 190.913 kb on + strand, within HMPREF1078_RS11355 at 190.914 kb on - strand, within HMPREF1078_RS11355 at 190.917 kb on + strand, within HMPREF1078_RS11355 at 190.917 kb on + strand, within HMPREF1078_RS11355 at 190.961 kb on + strand, within HMPREF1078_RS11355 at 190.994 kb on - strand, within HMPREF1078_RS11355 at 190.994 kb on - strand, within HMPREF1078_RS11355 at 191.004 kb on + strand, within HMPREF1078_RS11355 at 191.004 kb on + strand, within HMPREF1078_RS11355 at 191.005 kb on - strand, within HMPREF1078_RS11355 at 191.005 kb on - strand, within HMPREF1078_RS11355 at 191.012 kb on + strand, within HMPREF1078_RS11355 at 191.020 kb on + strand, within HMPREF1078_RS11355 at 191.020 kb on + strand, within HMPREF1078_RS11355 at 191.021 kb on - strand, within HMPREF1078_RS11355 at 191.024 kb on + strand, within HMPREF1078_RS11355 at 191.024 kb on + strand, within HMPREF1078_RS11355 at 191.024 kb on + strand, within HMPREF1078_RS11355 at 191.025 kb on - strand, within HMPREF1078_RS11355 at 191.025 kb on - strand, within HMPREF1078_RS11355 at 191.025 kb on - strand, within HMPREF1078_RS11355 at 191.025 kb on - strand, within HMPREF1078_RS11355 at 191.055 kb on + strand, within HMPREF1078_RS11355 at 191.056 kb on - strand at 191.057 kb on + strand at 191.115 kb on + strand at 191.146 kb on + strand at 191.211 kb on + strand at 191.235 kb on + strand at 191.235 kb on + strand at 191.255 kb on + strand at 191.293 kb on + strand at 191.298 kb on + strand at 191.298 kb on + strand at 191.298 kb on + strand at 191.298 kb on + strand at 191.299 kb on - strand at 191.300 kb on + strand at 191.301 kb on - strand at 191.301 kb on - strand at 191.342 kb on + strand at 191.342 kb on + strand at 191.353 kb on + strand at 191.353 kb on + strand at 191.354 kb on - strand at 191.355 kb on + strand at 191.355 kb on + strand at 191.355 kb on + strand at 191.357 kb on + strand at 191.358 kb on - strand at 191.400 kb on - strand at 191.455 kb on + strand at 191.464 kb on - strand at 191.464 kb on - strand at 191.511 kb on + strand at 191.565 kb on - strand at 191.895 kb on - strand, within HMPREF1078_RS11360 at 191.897 kb on - strand, within HMPREF1078_RS11360 at 191.908 kb on - strand, within HMPREF1078_RS11360 at 191.914 kb on - strand, within HMPREF1078_RS11360 at 191.961 kb on + strand, within HMPREF1078_RS11360 at 191.968 kb on + strand, within HMPREF1078_RS11360 at 191.982 kb on + strand, within HMPREF1078_RS11360 at 191.982 kb on + strand, within HMPREF1078_RS11360 at 191.982 kb on + strand, within HMPREF1078_RS11360 at 191.982 kb on + strand, within HMPREF1078_RS11360 at 192.037 kb on - strand, within HMPREF1078_RS11360 at 192.037 kb on - strand, within HMPREF1078_RS11360 at 192.037 kb on - strand, within HMPREF1078_RS11360 at 192.037 kb on - strand, within HMPREF1078_RS11360 at 192.047 kb on - strand, within HMPREF1078_RS11360 at 192.084 kb on + strand, within HMPREF1078_RS11360 at 192.115 kb on - strand, within HMPREF1078_RS11360 at 192.115 kb on - strand, within HMPREF1078_RS11360 at 192.115 kb on - strand, within HMPREF1078_RS11360 at 192.125 kb on - strand, within HMPREF1078_RS11360 at 192.125 kb on - strand, within HMPREF1078_RS11360 at 192.277 kb on + strand at 192.277 kb on + strand at 192.277 kb on + strand at 192.284 kb on + strand at 192.284 kb on + strand at 192.285 kb on - strand at 192.285 kb on - strand at 192.308 kb on + strand at 192.361 kb on + strand at 192.489 kb on - strand at 192.489 kb on - strand at 192.512 kb on + strand at 192.512 kb on + strand at 192.512 kb on + strand at 192.513 kb on - strand at 192.516 kb on - strand at 192.528 kb on + strand at 192.606 kb on + strand, within HMPREF1078_RS11365 at 192.606 kb on + strand, within HMPREF1078_RS11365 at 192.608 kb on + strand, within HMPREF1078_RS11365 at 192.631 kb on + strand, within HMPREF1078_RS11365 at 192.632 kb on - strand, within HMPREF1078_RS11365 at 192.653 kb on + strand, within HMPREF1078_RS11365 at 192.653 kb on + strand, within HMPREF1078_RS11365 at 192.653 kb on + strand, within HMPREF1078_RS11365 at 192.662 kb on + strand, within HMPREF1078_RS11365 at 192.663 kb on - strand, within HMPREF1078_RS11365 at 192.664 kb on + strand, within HMPREF1078_RS11365 at 192.664 kb on + strand, within HMPREF1078_RS11365 at 192.664 kb on + strand, within HMPREF1078_RS11365 at 192.664 kb on + strand, within HMPREF1078_RS11365 at 192.664 kb on + strand, within HMPREF1078_RS11365 at 192.665 kb on - strand, within HMPREF1078_RS11365 at 192.665 kb on - strand, within HMPREF1078_RS11365 at 192.665 kb on - strand, within HMPREF1078_RS11365 at 192.665 kb on - strand, within HMPREF1078_RS11365 at 192.707 kb on + strand, within HMPREF1078_RS11365 at 192.708 kb on - strand, within HMPREF1078_RS11365 at 192.774 kb on - strand, within HMPREF1078_RS11365 at 192.774 kb on - strand, within HMPREF1078_RS11365 at 192.812 kb on + strand, within HMPREF1078_RS11365 at 192.821 kb on + strand, within HMPREF1078_RS11365 at 192.821 kb on + strand, within HMPREF1078_RS11365 at 192.824 kb on - strand, within HMPREF1078_RS11365 at 192.830 kb on - strand, within HMPREF1078_RS11365 at 192.849 kb on + strand, within HMPREF1078_RS11365 at 192.850 kb on - strand, within HMPREF1078_RS11365 at 192.850 kb on - strand, within HMPREF1078_RS11365 at 192.850 kb on - strand, within HMPREF1078_RS11365 at 192.920 kb on + strand, within HMPREF1078_RS11365 at 192.960 kb on + strand, within HMPREF1078_RS11365 at 192.961 kb on - strand, within HMPREF1078_RS11365 at 192.961 kb on - strand, within HMPREF1078_RS11365 at 193.016 kb on + strand, within HMPREF1078_RS11365 at 193.073 kb on - strand at 193.083 kb on + strand at 193.083 kb on + strand at 193.084 kb on - strand at 193.102 kb on - strand at 193.109 kb on + strand at 193.112 kb on + strand at 193.112 kb on + strand at 193.112 kb on + strand at 193.113 kb on - strand at 193.137 kb on + strand at 193.137 kb on + strand at 193.137 kb on + strand at 193.137 kb on + strand at 193.137 kb on + strand at 193.178 kb on + strand at 193.192 kb on + strand at 193.192 kb on + strand at 193.194 kb on + strand at 193.194 kb on + strand at 193.204 kb on + strand at 193.204 kb on + strand at 193.204 kb on + strand at 193.204 kb on + strand at 193.204 kb on + strand at 193.204 kb on + strand at 193.204 kb on + strand at 193.205 kb on - strand at 193.205 kb on - strand at 193.205 kb on - strand at 193.205 kb on - strand at 193.205 kb on - strand at 193.205 kb on - strand at 193.223 kb on + strand at 193.232 kb on + strand at 193.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mg/mL (C) remove 190,824 + HMPREF1078_RS11355 0.75 +0.7 190,824 + HMPREF1078_RS11355 0.75 +0.3 190,825 - HMPREF1078_RS11355 0.75 +0.4 190,834 - HMPREF1078_RS11355 0.76 +0.9 190,889 - HMPREF1078_RS11355 0.79 -0.0 190,889 - HMPREF1078_RS11355 0.79 +1.5 190,890 + HMPREF1078_RS11355 0.79 +0.5 190,891 - HMPREF1078_RS11355 0.80 +0.5 190,898 + HMPREF1078_RS11355 0.80 -0.8 190,898 + HMPREF1078_RS11355 0.80 -0.2 190,898 + HMPREF1078_RS11355 0.80 -0.4 190,909 - HMPREF1078_RS11355 0.81 -1.0 190,913 + HMPREF1078_RS11355 0.81 -0.4 190,913 + HMPREF1078_RS11355 0.81 -2.5 190,913 + HMPREF1078_RS11355 0.81 -0.1 190,913 + HMPREF1078_RS11355 0.81 +1.4 190,914 - HMPREF1078_RS11355 0.81 -0.1 190,917 + HMPREF1078_RS11355 0.81 -2.2 190,917 + HMPREF1078_RS11355 0.81 +0.3 190,961 + HMPREF1078_RS11355 0.84 +0.1 190,994 - HMPREF1078_RS11355 0.86 -0.4 190,994 - HMPREF1078_RS11355 0.86 -0.5 191,004 + HMPREF1078_RS11355 0.87 -0.6 191,004 + HMPREF1078_RS11355 0.87 +0.8 191,005 - HMPREF1078_RS11355 0.87 -1.2 191,005 - HMPREF1078_RS11355 0.87 +0.7 191,012 + HMPREF1078_RS11355 0.87 -0.0 191,020 + HMPREF1078_RS11355 0.88 +0.1 191,020 + HMPREF1078_RS11355 0.88 +0.2 191,021 - HMPREF1078_RS11355 0.88 +0.9 191,024 + HMPREF1078_RS11355 0.88 +0.3 191,024 + HMPREF1078_RS11355 0.88 -0.2 191,024 + HMPREF1078_RS11355 0.88 -0.2 191,025 - HMPREF1078_RS11355 0.88 -1.5 191,025 - HMPREF1078_RS11355 0.88 +1.2 191,025 - HMPREF1078_RS11355 0.88 -0.6 191,025 - HMPREF1078_RS11355 0.88 +1.8 191,055 + HMPREF1078_RS11355 0.90 -0.7 191,056 - +0.4 191,057 + +1.4 191,115 + -0.4 191,146 + -1.3 191,211 + -1.1 191,235 + -0.8 191,235 + +0.6 191,255 + +0.2 191,293 + +0.3 191,298 + +0.2 191,298 + -0.7 191,298 + -0.0 191,298 + +0.2 191,299 - +1.0 191,300 + -0.1 191,301 - -1.0 191,301 - +0.1 191,342 + -1.1 191,342 + -0.9 191,353 + +0.7 191,353 + -0.7 191,354 - -1.4 191,355 + +0.2 191,355 + +0.7 191,355 + +0.3 191,357 + +1.3 191,358 - +1.5 191,400 - +0.1 191,455 + +0.9 191,464 - -0.6 191,464 - +0.5 191,511 + -0.3 191,565 - -1.2 191,895 - HMPREF1078_RS11360 0.21 -0.8 191,897 - HMPREF1078_RS11360 0.22 +0.3 191,908 - HMPREF1078_RS11360 0.24 +0.2 191,914 - HMPREF1078_RS11360 0.26 +0.5 191,961 + HMPREF1078_RS11360 0.36 -0.1 191,968 + HMPREF1078_RS11360 0.38 +0.4 191,982 + HMPREF1078_RS11360 0.41 -0.8 191,982 + HMPREF1078_RS11360 0.41 +0.1 191,982 + HMPREF1078_RS11360 0.41 +1.1 191,982 + HMPREF1078_RS11360 0.41 +0.8 192,037 - HMPREF1078_RS11360 0.53 -0.7 192,037 - HMPREF1078_RS11360 0.53 -2.3 192,037 - HMPREF1078_RS11360 0.53 +1.4 192,037 - HMPREF1078_RS11360 0.53 -0.2 192,047 - HMPREF1078_RS11360 0.55 -1.3 192,084 + HMPREF1078_RS11360 0.63 +1.4 192,115 - HMPREF1078_RS11360 0.70 +0.7 192,115 - HMPREF1078_RS11360 0.70 -1.0 192,115 - HMPREF1078_RS11360 0.70 +0.5 192,125 - HMPREF1078_RS11360 0.72 +1.3 192,125 - HMPREF1078_RS11360 0.72 +0.1 192,277 + +0.7 192,277 + -0.3 192,277 + -0.7 192,284 + +0.6 192,284 + -0.3 192,285 - +0.4 192,285 - -1.0 192,308 + +0.2 192,361 + -1.3 192,489 - +1.0 192,489 - -2.3 192,512 + +0.4 192,512 + +1.4 192,512 + +0.5 192,513 - -2.7 192,516 - -0.4 192,528 + +1.2 192,606 + HMPREF1078_RS11365 0.15 -0.0 192,606 + HMPREF1078_RS11365 0.15 +0.5 192,608 + HMPREF1078_RS11365 0.16 +0.2 192,631 + HMPREF1078_RS11365 0.20 -0.2 192,632 - HMPREF1078_RS11365 0.20 -0.6 192,653 + HMPREF1078_RS11365 0.23 -0.7 192,653 + HMPREF1078_RS11365 0.23 +0.3 192,653 + HMPREF1078_RS11365 0.23 -0.0 192,662 + HMPREF1078_RS11365 0.25 +1.5 192,663 - HMPREF1078_RS11365 0.25 -0.4 192,664 + HMPREF1078_RS11365 0.25 +0.6 192,664 + HMPREF1078_RS11365 0.25 -0.1 192,664 + HMPREF1078_RS11365 0.25 -1.5 192,664 + HMPREF1078_RS11365 0.25 -0.3 192,664 + HMPREF1078_RS11365 0.25 +2.1 192,665 - HMPREF1078_RS11365 0.25 -2.3 192,665 - HMPREF1078_RS11365 0.25 -0.0 192,665 - HMPREF1078_RS11365 0.25 +0.8 192,665 - HMPREF1078_RS11365 0.25 +0.3 192,707 + HMPREF1078_RS11365 0.32 -0.1 192,708 - HMPREF1078_RS11365 0.33 -0.9 192,774 - HMPREF1078_RS11365 0.44 +0.9 192,774 - HMPREF1078_RS11365 0.44 -0.2 192,812 + HMPREF1078_RS11365 0.50 -2.3 192,821 + HMPREF1078_RS11365 0.52 -0.1 192,821 + HMPREF1078_RS11365 0.52 +0.5 192,824 - HMPREF1078_RS11365 0.52 -0.1 192,830 - HMPREF1078_RS11365 0.53 +0.8 192,849 + HMPREF1078_RS11365 0.57 +0.2 192,850 - HMPREF1078_RS11365 0.57 -0.5 192,850 - HMPREF1078_RS11365 0.57 -0.6 192,850 - HMPREF1078_RS11365 0.57 -1.9 192,920 + HMPREF1078_RS11365 0.69 -0.7 192,960 + HMPREF1078_RS11365 0.76 +1.2 192,961 - HMPREF1078_RS11365 0.76 +0.7 192,961 - HMPREF1078_RS11365 0.76 -0.3 193,016 + HMPREF1078_RS11365 0.85 -1.0 193,073 - +0.1 193,083 + -0.1 193,083 + +1.5 193,084 - +0.3 193,102 - +0.3 193,109 + -0.1 193,112 + +0.3 193,112 + +0.8 193,112 + -0.9 193,113 - +0.5 193,137 + +0.4 193,137 + -0.4 193,137 + -0.3 193,137 + -1.5 193,137 + -1.0 193,178 + +0.6 193,192 + -0.5 193,192 + -1.1 193,194 + +1.1 193,194 + +1.4 193,204 + +0.5 193,204 + +0.7 193,204 + +1.2 193,204 + -0.4 193,204 + +0.1 193,204 + -1.1 193,204 + +0.1 193,205 - -0.1 193,205 - -0.2 193,205 - +1.2 193,205 - +0.6 193,205 - +0.0 193,205 - -0.7 193,223 + +0.3 193,232 + -0.4 193,233 - -0.2
Or see this region's nucleotide sequence