Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS02490

Experiment: D-Xylose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS02485 and HMPREF1078_RS02490 are separated by 18 nucleotidesHMPREF1078_RS02490 and HMPREF1078_RS02495 are separated by 20 nucleotides HMPREF1078_RS02485: HMPREF1078_RS02485 - hypothetical protein, at 612,463 to 614,739 _RS02485 HMPREF1078_RS02490: HMPREF1078_RS02490 - alpha-N-acetylglucosaminidase, at 614,758 to 617,016 _RS02490 HMPREF1078_RS02495: HMPREF1078_RS02495 - NPCBM/NEW2 domain-containing protein, at 617,037 to 619,853 _RS02495 Position (kb) 614 615 616 617 618Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 613.867 kb on - strand, within HMPREF1078_RS02485at 614.034 kb on + strand, within HMPREF1078_RS02485at 614.035 kb on - strand, within HMPREF1078_RS02485at 614.074 kb on - strand, within HMPREF1078_RS02485at 614.078 kb on - strand, within HMPREF1078_RS02485at 614.078 kb on - strand, within HMPREF1078_RS02485at 614.135 kb on - strand, within HMPREF1078_RS02485at 614.168 kb on - strand, within HMPREF1078_RS02485at 614.198 kb on - strand, within HMPREF1078_RS02485at 614.235 kb on + strand, within HMPREF1078_RS02485at 614.235 kb on + strand, within HMPREF1078_RS02485at 614.257 kb on + strand, within HMPREF1078_RS02485at 614.381 kb on - strand, within HMPREF1078_RS02485at 614.447 kb on + strand, within HMPREF1078_RS02485at 614.597 kb on + strandat 614.604 kb on + strandat 614.605 kb on - strandat 614.620 kb on - strandat 614.660 kb on - strandat 614.696 kb on + strandat 614.716 kb on + strandat 614.717 kb on - strandat 614.725 kb on + strandat 614.742 kb on + strandat 614.742 kb on + strandat 614.766 kb on + strandat 614.767 kb on - strandat 614.782 kb on - strandat 614.782 kb on - strandat 614.800 kb on - strandat 614.921 kb on - strandat 614.921 kb on - strandat 614.964 kb on + strandat 614.964 kb on + strandat 615.008 kb on - strand, within HMPREF1078_RS02490at 615.015 kb on + strand, within HMPREF1078_RS02490at 615.115 kb on + strand, within HMPREF1078_RS02490at 615.130 kb on - strand, within HMPREF1078_RS02490at 615.130 kb on - strand, within HMPREF1078_RS02490at 615.210 kb on + strand, within HMPREF1078_RS02490at 615.216 kb on + strand, within HMPREF1078_RS02490at 615.248 kb on - strand, within HMPREF1078_RS02490at 615.248 kb on - strand, within HMPREF1078_RS02490at 615.253 kb on - strand, within HMPREF1078_RS02490at 615.253 kb on - strand, within HMPREF1078_RS02490at 615.268 kb on - strand, within HMPREF1078_RS02490at 615.388 kb on - strand, within HMPREF1078_RS02490at 615.490 kb on + strand, within HMPREF1078_RS02490at 615.506 kb on + strand, within HMPREF1078_RS02490at 615.616 kb on + strand, within HMPREF1078_RS02490at 615.892 kb on - strand, within HMPREF1078_RS02490at 615.906 kb on + strand, within HMPREF1078_RS02490at 615.907 kb on - strand, within HMPREF1078_RS02490at 615.949 kb on + strand, within HMPREF1078_RS02490at 615.950 kb on - strand, within HMPREF1078_RS02490at 615.953 kb on + strand, within HMPREF1078_RS02490at 615.954 kb on - strand, within HMPREF1078_RS02490at 616.027 kb on + strand, within HMPREF1078_RS02490at 616.028 kb on - strand, within HMPREF1078_RS02490at 616.077 kb on - strand, within HMPREF1078_RS02490at 616.270 kb on + strand, within HMPREF1078_RS02490at 616.304 kb on + strand, within HMPREF1078_RS02490at 616.305 kb on - strand, within HMPREF1078_RS02490at 616.365 kb on + strand, within HMPREF1078_RS02490at 616.461 kb on + strand, within HMPREF1078_RS02490at 616.718 kb on - strand, within HMPREF1078_RS02490at 616.723 kb on - strand, within HMPREF1078_RS02490at 616.920 kb on + strandat 616.951 kb on + strandat 616.952 kb on - strandat 616.953 kb on + strandat 616.989 kb on + strandat 617.015 kb on - strandat 617.032 kb on - strandat 617.033 kb on + strandat 617.036 kb on + strandat 617.036 kb on + strandat 617.037 kb on - strandat 617.110 kb on + strandat 617.111 kb on - strandat 617.322 kb on + strand, within HMPREF1078_RS02495at 617.377 kb on - strand, within HMPREF1078_RS02495at 617.404 kb on - strand, within HMPREF1078_RS02495at 617.449 kb on + strand, within HMPREF1078_RS02495at 617.449 kb on + strand, within HMPREF1078_RS02495at 617.450 kb on - strand, within HMPREF1078_RS02495at 617.628 kb on - strand, within HMPREF1078_RS02495at 617.632 kb on - strand, within HMPREF1078_RS02495at 617.694 kb on - strand, within HMPREF1078_RS02495at 617.766 kb on - strand, within HMPREF1078_RS02495at 617.840 kb on - strand, within HMPREF1078_RS02495at 617.854 kb on + strand, within HMPREF1078_RS02495at 617.927 kb on + strand, within HMPREF1078_RS02495

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose 10 mg/mL (C)
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613,867 - HMPREF1078_RS02485 0.62 -1.0
614,034 + HMPREF1078_RS02485 0.69 -0.4
614,035 - HMPREF1078_RS02485 0.69 +0.6
614,074 - HMPREF1078_RS02485 0.71 +0.9
614,078 - HMPREF1078_RS02485 0.71 -0.0
614,078 - HMPREF1078_RS02485 0.71 -1.9
614,135 - HMPREF1078_RS02485 0.73 -2.4
614,168 - HMPREF1078_RS02485 0.75 +0.5
614,198 - HMPREF1078_RS02485 0.76 -0.8
614,235 + HMPREF1078_RS02485 0.78 +0.3
614,235 + HMPREF1078_RS02485 0.78 +0.6
614,257 + HMPREF1078_RS02485 0.79 +0.4
614,381 - HMPREF1078_RS02485 0.84 -0.6
614,447 + HMPREF1078_RS02485 0.87 +0.5
614,597 + -1.8
614,604 + +0.4
614,605 - -1.9
614,620 - -3.4
614,660 - +2.2
614,696 + +1.0
614,716 + -1.7
614,717 - -0.3
614,725 + -1.9
614,742 + -0.2
614,742 + -1.4
614,766 + -0.1
614,767 - -1.3
614,782 - -0.4
614,782 - +0.6
614,800 - -0.5
614,921 - -2.2
614,921 - +0.0
614,964 + -0.1
614,964 + -0.1
615,008 - HMPREF1078_RS02490 0.11 -0.3
615,015 + HMPREF1078_RS02490 0.11 -1.7
615,115 + HMPREF1078_RS02490 0.16 +0.1
615,130 - HMPREF1078_RS02490 0.16 -0.1
615,130 - HMPREF1078_RS02490 0.16 -1.0
615,210 + HMPREF1078_RS02490 0.20 -1.2
615,216 + HMPREF1078_RS02490 0.20 +0.2
615,248 - HMPREF1078_RS02490 0.22 +1.0
615,248 - HMPREF1078_RS02490 0.22 -2.4
615,253 - HMPREF1078_RS02490 0.22 -0.6
615,253 - HMPREF1078_RS02490 0.22 +0.3
615,268 - HMPREF1078_RS02490 0.23 -2.0
615,388 - HMPREF1078_RS02490 0.28 -2.5
615,490 + HMPREF1078_RS02490 0.32 -2.2
615,506 + HMPREF1078_RS02490 0.33 -1.0
615,616 + HMPREF1078_RS02490 0.38 +2.2
615,892 - HMPREF1078_RS02490 0.50 +0.8
615,906 + HMPREF1078_RS02490 0.51 +2.8
615,907 - HMPREF1078_RS02490 0.51 -2.2
615,949 + HMPREF1078_RS02490 0.53 +0.9
615,950 - HMPREF1078_RS02490 0.53 -0.9
615,953 + HMPREF1078_RS02490 0.53 -0.8
615,954 - HMPREF1078_RS02490 0.53 +0.5
616,027 + HMPREF1078_RS02490 0.56 +1.1
616,028 - HMPREF1078_RS02490 0.56 -1.7
616,077 - HMPREF1078_RS02490 0.58 -0.8
616,270 + HMPREF1078_RS02490 0.67 -0.8
616,304 + HMPREF1078_RS02490 0.68 -1.8
616,305 - HMPREF1078_RS02490 0.68 -0.3
616,365 + HMPREF1078_RS02490 0.71 +1.0
616,461 + HMPREF1078_RS02490 0.75 +0.7
616,718 - HMPREF1078_RS02490 0.87 -1.5
616,723 - HMPREF1078_RS02490 0.87 -1.4
616,920 + -0.8
616,951 + +0.4
616,952 - -1.2
616,953 + +1.1
616,989 + -1.2
617,015 - +0.4
617,032 - +2.3
617,033 + -0.9
617,036 + -0.3
617,036 + -0.8
617,037 - -1.0
617,110 + +1.6
617,111 - +0.1
617,322 + HMPREF1078_RS02495 0.10 +1.8
617,377 - HMPREF1078_RS02495 0.12 +0.9
617,404 - HMPREF1078_RS02495 0.13 -0.7
617,449 + HMPREF1078_RS02495 0.15 -2.4
617,449 + HMPREF1078_RS02495 0.15 -0.9
617,450 - HMPREF1078_RS02495 0.15 -0.5
617,628 - HMPREF1078_RS02495 0.21 +2.5
617,632 - HMPREF1078_RS02495 0.21 +0.7
617,694 - HMPREF1078_RS02495 0.23 +0.6
617,766 - HMPREF1078_RS02495 0.26 +1.1
617,840 - HMPREF1078_RS02495 0.29 -0.6
617,854 + HMPREF1078_RS02495 0.29 +0.8
617,927 + HMPREF1078_RS02495 0.32 -2.3

Or see this region's nucleotide sequence