Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00210

Experiment: D-Xylose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose 10 mg/mL (C)
47,259	+				-0.8
47,261	+				-0.6
47,261	+				+0.5
47,377	+		HMPREF1078_RS00200	0.30	-0.3
47,458	+		HMPREF1078_RS00200	0.50	+1.4
47,474	+		HMPREF1078_RS00200	0.53	+0.3
47,474	+		HMPREF1078_RS00200	0.53	+0.5
47,595	+		HMPREF1078_RS00200	0.82	-0.3
47,628	+				+1.9
47,628	+				-0.4
47,652	+				-2.2
47,659	+				-1.8
47,659	+				-1.6
47,666	+				-2.9
47,675	+				-3.4
48,176	+		HMPREF1078_RS00205	0.90	-0.8
48,179	+				+0.2
48,185	+				-3.0
48,227	+				-1.6
48,228	-				-0.8
48,231	+				-2.7
48,231	+				-2.7
48,231	+				-2.3
48,231	+				-1.6
48,231	+				-0.9
48,243	+				-1.5
48,243	+				-1.0
48,243	+				-3.2
48,247	-				+0.5
48,247	-				-0.0
48,247	-				-0.0
48,380	+				-0.0
48,381	-				+0.2
48,417	+		HMPREF1078_RS00210	0.10	+0.2
48,527	+		HMPREF1078_RS00210	0.17	-1.3
48,527	+		HMPREF1078_RS00210	0.17	+0.2
48,531	+		HMPREF1078_RS00210	0.18	-0.3
48,532	-		HMPREF1078_RS00210	0.18	-1.7
48,584	+		HMPREF1078_RS00210	0.21	-1.0
48,584	+		HMPREF1078_RS00210	0.21	-0.0
48,584	+		HMPREF1078_RS00210	0.21	+0.5
48,585	-		HMPREF1078_RS00210	0.21	-0.3
48,585	-		HMPREF1078_RS00210	0.21	-0.9
48,632	+		HMPREF1078_RS00210	0.24	-0.0
48,639	-		HMPREF1078_RS00210	0.25	-0.0
48,662	+		HMPREF1078_RS00210	0.26	-0.0
48,663	-		HMPREF1078_RS00210	0.26	+0.2
48,663	-		HMPREF1078_RS00210	0.26	+0.2
48,676	+		HMPREF1078_RS00210	0.27	-0.5
48,677	-		HMPREF1078_RS00210	0.27	-0.0
48,703	+		HMPREF1078_RS00210	0.29	-0.0
48,703	+		HMPREF1078_RS00210	0.29	-0.5
48,716	+		HMPREF1078_RS00210	0.30	-0.5
48,734	+		HMPREF1078_RS00210	0.31	+0.2
48,783	+		HMPREF1078_RS00210	0.34	-0.0
48,809	-		HMPREF1078_RS00210	0.36	+0.5
48,809	-		HMPREF1078_RS00210	0.36	-0.0
48,843	-		HMPREF1078_RS00210	0.38	-1.6
48,843	-		HMPREF1078_RS00210	0.38	+0.2
48,888	-		HMPREF1078_RS00210	0.41	-0.0
48,992	+		HMPREF1078_RS00210	0.47	-0.5
48,998	+		HMPREF1078_RS00210	0.48	+0.5
49,026	-		HMPREF1078_RS00210	0.50	+0.2
49,113	-		HMPREF1078_RS00210	0.55	-0.5
49,157	-		HMPREF1078_RS00210	0.58	-0.3
49,230	-		HMPREF1078_RS00210	0.63	+0.2
49,255	+		HMPREF1078_RS00210	0.64	-1.5
49,316	+		HMPREF1078_RS00210	0.68	-0.3
49,322	+		HMPREF1078_RS00210	0.69	+0.5
49,322	+		HMPREF1078_RS00210	0.69	-0.0
49,340	+		HMPREF1078_RS00210	0.70	-0.6
49,341	-		HMPREF1078_RS00210	0.70	-0.6
49,405	+		HMPREF1078_RS00210	0.74	-0.5
49,410	+		HMPREF1078_RS00210	0.74	+0.5
49,417	-		HMPREF1078_RS00210	0.75	+0.2
49,442	+		HMPREF1078_RS00210	0.76	-1.7
49,464	+		HMPREF1078_RS00210	0.78	+0.5
49,465	-		HMPREF1078_RS00210	0.78	+0.2
49,641	+		HMPREF1078_RS00210	0.89	-0.8
49,642	-		HMPREF1078_RS00210	0.89	-1.0
49,803	+				-1.8
49,857	+				+0.2
49,935	-		HMPREF1078_RS00215	0.32	-0.5
49,994	-		HMPREF1078_RS00215	0.49	-0.3
50,055	+		HMPREF1078_RS00215	0.68	-0.0
50,055	+		HMPREF1078_RS00215	0.68	-0.8
50,055	+		HMPREF1078_RS00215	0.68	-0.6
50,104	+		HMPREF1078_RS00215	0.82	-0.6
50,117	+		HMPREF1078_RS00215	0.86	-0.3
50,117	+		HMPREF1078_RS00215	0.86	-0.0
50,118	-		HMPREF1078_RS00215	0.86	+0.2
50,160	+				-0.5
50,161	-				+0.5
50,161	-				-2.3
50,174	-				-1.7
50,182	-				-0.4
50,182	-				-3.1
50,183	+				+0.2
50,205	-				+1.4
50,205	-				+0.3
50,228	+				-1.0
50,229	-				-0.8
50,246	+				-1.4
50,247	-				-0.6
50,253	-				-3.1
50,256	+				-1.1
50,257	-				-2.3
50,286	+				-2.4
50,286	+				-2.2
50,292	+				-1.3
50,294	+				-2.1
50,297	+				-0.6
50,298	-				-4.0
50,298	-				-2.1
50,319	+				-3.6
50,323	+				-1.2
50,326	-				-3.0
50,402	+				-5.5
50,403	-				-2.2
50,414	+				-3.3
50,414	+				-2.9
50,415	-				-4.2
50,433	-				-3.3
50,477	+				-2.5
50,478	-				-0.3
50,483	+				-2.3
50,516	+		HMPREF1078_RS00220	0.10	-0.3
50,516	+		HMPREF1078_RS00220	0.10	-2.1
50,517	-		HMPREF1078_RS00220	0.10	-2.4
50,518	+		HMPREF1078_RS00220	0.10	-4.2
50,518	+		HMPREF1078_RS00220	0.10	-3.8
50,519	-		HMPREF1078_RS00220	0.10	-3.2
50,539	+		HMPREF1078_RS00220	0.11	-1.0
50,539	+		HMPREF1078_RS00220	0.11	-5.4
50,540	-		HMPREF1078_RS00220	0.11	-2.6
50,540	-		HMPREF1078_RS00220	0.11	-1.2
50,579	+		HMPREF1078_RS00220	0.13	-2.0
50,579	+		HMPREF1078_RS00220	0.13	+0.2
50,579	+		HMPREF1078_RS00220	0.13	-0.6
50,582	+		HMPREF1078_RS00220	0.13	-3.2
50,583	-		HMPREF1078_RS00220	0.13	-2.9
50,583	-		HMPREF1078_RS00220	0.13	-4.8
50,583	-		HMPREF1078_RS00220	0.13	-3.9
50,631	+		HMPREF1078_RS00220	0.16	-3.4
50,631	+		HMPREF1078_RS00220	0.16	-4.5
50,640	-		HMPREF1078_RS00220	0.16	-3.2
50,640	-		HMPREF1078_RS00220	0.16	-4.4
50,772	-		HMPREF1078_RS00220	0.22	-2.5
50,776	+		HMPREF1078_RS00220	0.22	-2.7
50,776	+		HMPREF1078_RS00220	0.22	-2.0
50,777	-		HMPREF1078_RS00220	0.22	+0.2
50,777	-		HMPREF1078_RS00220	0.22	-3.5
50,783	+		HMPREF1078_RS00220	0.23	-2.9
50,784	-		HMPREF1078_RS00220	0.23	-1.0
50,784	-		HMPREF1078_RS00220	0.23	-2.0
50,804	+		HMPREF1078_RS00220	0.24	-3.6
50,804	+		HMPREF1078_RS00220	0.24	-3.2