Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16075 and HMPREF1078_RS16080 are separated by 98 nucleotides HMPREF1078_RS16080 and HMPREF1078_RS16085 are separated by 127 nucleotides HMPREF1078_RS16085 and HMPREF1078_RS16090 are separated by 57 nucleotides
HMPREF1078_RS16075: HMPREF1078_RS16075 - AAA family ATPase, at 338,923 to 341,049
_RS16075
HMPREF1078_RS16080: HMPREF1078_RS16080 - TrkA C-terminal domain-containing protein, at 341,148 to 342,746
_RS16080
HMPREF1078_RS16085: HMPREF1078_RS16085 - tRNA pseudouridine(38-40) synthase TruA, at 342,874 to 343,638
_RS16085
HMPREF1078_RS16090: HMPREF1078_RS16090 - DMT family transporter, at 343,696 to 344,592
_RS16090
Position (kb) 341
342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 340.205 kb on - strand, within HMPREF1078_RS16075 at 340.205 kb on - strand, within HMPREF1078_RS16075 at 340.229 kb on + strand, within HMPREF1078_RS16075 at 340.269 kb on - strand, within HMPREF1078_RS16075 at 340.327 kb on - strand, within HMPREF1078_RS16075 at 340.344 kb on + strand, within HMPREF1078_RS16075 at 340.344 kb on + strand, within HMPREF1078_RS16075 at 340.346 kb on + strand, within HMPREF1078_RS16075 at 340.347 kb on - strand, within HMPREF1078_RS16075 at 340.382 kb on + strand, within HMPREF1078_RS16075 at 340.495 kb on - strand, within HMPREF1078_RS16075 at 340.495 kb on - strand, within HMPREF1078_RS16075 at 340.502 kb on + strand, within HMPREF1078_RS16075 at 340.606 kb on + strand, within HMPREF1078_RS16075 at 340.607 kb on - strand, within HMPREF1078_RS16075 at 340.616 kb on - strand, within HMPREF1078_RS16075 at 340.624 kb on + strand, within HMPREF1078_RS16075 at 340.647 kb on + strand, within HMPREF1078_RS16075 at 340.647 kb on + strand, within HMPREF1078_RS16075 at 340.659 kb on + strand, within HMPREF1078_RS16075 at 340.753 kb on - strand, within HMPREF1078_RS16075 at 340.826 kb on + strand, within HMPREF1078_RS16075 at 340.826 kb on + strand, within HMPREF1078_RS16075 at 340.826 kb on + strand, within HMPREF1078_RS16075 at 340.827 kb on - strand, within HMPREF1078_RS16075 at 340.881 kb on + strand at 340.882 kb on - strand at 340.889 kb on - strand at 340.889 kb on - strand at 340.889 kb on - strand at 340.889 kb on - strand at 340.936 kb on - strand at 341.081 kb on + strand at 341.081 kb on + strand at 341.123 kb on + strand at 341.142 kb on + strand at 341.143 kb on - strand at 341.143 kb on - strand at 341.150 kb on - strand at 341.151 kb on + strand at 341.152 kb on - strand at 341.187 kb on + strand at 341.188 kb on - strand at 341.400 kb on + strand, within HMPREF1078_RS16080 at 341.497 kb on - strand, within HMPREF1078_RS16080 at 341.497 kb on - strand, within HMPREF1078_RS16080 at 341.497 kb on - strand, within HMPREF1078_RS16080 at 341.646 kb on + strand, within HMPREF1078_RS16080 at 341.647 kb on - strand, within HMPREF1078_RS16080 at 341.737 kb on - strand, within HMPREF1078_RS16080 at 341.841 kb on - strand, within HMPREF1078_RS16080 at 341.870 kb on - strand, within HMPREF1078_RS16080 at 341.875 kb on - strand, within HMPREF1078_RS16080 at 342.054 kb on + strand, within HMPREF1078_RS16080 at 342.055 kb on - strand, within HMPREF1078_RS16080 at 342.141 kb on + strand, within HMPREF1078_RS16080 at 342.141 kb on + strand, within HMPREF1078_RS16080 at 342.141 kb on + strand, within HMPREF1078_RS16080 at 342.142 kb on - strand, within HMPREF1078_RS16080 at 342.143 kb on + strand, within HMPREF1078_RS16080 at 342.143 kb on + strand, within HMPREF1078_RS16080 at 342.143 kb on + strand, within HMPREF1078_RS16080 at 342.143 kb on + strand, within HMPREF1078_RS16080 at 342.144 kb on - strand, within HMPREF1078_RS16080 at 342.144 kb on - strand, within HMPREF1078_RS16080 at 342.188 kb on - strand, within HMPREF1078_RS16080 at 342.427 kb on + strand, within HMPREF1078_RS16080 at 342.427 kb on + strand, within HMPREF1078_RS16080 at 342.428 kb on - strand, within HMPREF1078_RS16080 at 342.428 kb on - strand, within HMPREF1078_RS16080 at 342.428 kb on - strand, within HMPREF1078_RS16080 at 342.431 kb on + strand, within HMPREF1078_RS16080 at 342.432 kb on - strand, within HMPREF1078_RS16080 at 342.432 kb on - strand, within HMPREF1078_RS16080 at 342.432 kb on - strand, within HMPREF1078_RS16080 at 342.435 kb on + strand, within HMPREF1078_RS16080 at 342.480 kb on + strand, within HMPREF1078_RS16080 at 342.480 kb on + strand, within HMPREF1078_RS16080 at 342.481 kb on - strand, within HMPREF1078_RS16080 at 342.481 kb on - strand, within HMPREF1078_RS16080 at 342.481 kb on - strand, within HMPREF1078_RS16080 at 342.538 kb on - strand, within HMPREF1078_RS16080 at 342.538 kb on - strand, within HMPREF1078_RS16080 at 342.561 kb on + strand, within HMPREF1078_RS16080 at 342.597 kb on + strand at 342.681 kb on + strand at 342.754 kb on - strand at 342.772 kb on + strand at 342.802 kb on + strand at 342.804 kb on + strand at 342.804 kb on + strand at 342.805 kb on - strand at 342.805 kb on - strand at 342.805 kb on - strand at 342.805 kb on - strand at 342.856 kb on - strand at 342.856 kb on - strand at 342.888 kb on + strand at 342.890 kb on + strand at 342.891 kb on - strand at 342.896 kb on + strand at 342.896 kb on + strand at 342.896 kb on + strand at 342.901 kb on + strand at 342.932 kb on + strand at 342.964 kb on - strand, within HMPREF1078_RS16085 at 342.964 kb on - strand, within HMPREF1078_RS16085 at 342.982 kb on - strand, within HMPREF1078_RS16085 at 343.134 kb on + strand, within HMPREF1078_RS16085 at 343.149 kb on + strand, within HMPREF1078_RS16085 at 343.154 kb on + strand, within HMPREF1078_RS16085 at 343.154 kb on + strand, within HMPREF1078_RS16085 at 343.154 kb on + strand, within HMPREF1078_RS16085 at 343.155 kb on - strand, within HMPREF1078_RS16085 at 343.160 kb on + strand, within HMPREF1078_RS16085 at 343.161 kb on - strand, within HMPREF1078_RS16085 at 343.201 kb on - strand, within HMPREF1078_RS16085 at 343.201 kb on - strand, within HMPREF1078_RS16085 at 343.205 kb on - strand, within HMPREF1078_RS16085 at 343.205 kb on - strand, within HMPREF1078_RS16085 at 343.206 kb on + strand, within HMPREF1078_RS16085 at 343.207 kb on - strand, within HMPREF1078_RS16085 at 343.210 kb on + strand, within HMPREF1078_RS16085 at 343.257 kb on + strand, within HMPREF1078_RS16085 at 343.257 kb on + strand, within HMPREF1078_RS16085 at 343.258 kb on - strand, within HMPREF1078_RS16085 at 343.318 kb on + strand, within HMPREF1078_RS16085 at 343.319 kb on - strand, within HMPREF1078_RS16085 at 343.322 kb on + strand, within HMPREF1078_RS16085 at 343.322 kb on + strand, within HMPREF1078_RS16085 at 343.381 kb on + strand, within HMPREF1078_RS16085 at 343.381 kb on + strand, within HMPREF1078_RS16085 at 343.382 kb on - strand, within HMPREF1078_RS16085 at 343.382 kb on - strand, within HMPREF1078_RS16085 at 343.383 kb on + strand, within HMPREF1078_RS16085 at 343.383 kb on + strand, within HMPREF1078_RS16085 at 343.384 kb on - strand, within HMPREF1078_RS16085 at 343.427 kb on + strand, within HMPREF1078_RS16085 at 343.428 kb on - strand, within HMPREF1078_RS16085 at 343.428 kb on - strand, within HMPREF1078_RS16085 at 343.452 kb on + strand, within HMPREF1078_RS16085 at 343.452 kb on + strand, within HMPREF1078_RS16085 at 343.453 kb on - strand, within HMPREF1078_RS16085 at 343.453 kb on - strand, within HMPREF1078_RS16085 at 343.582 kb on + strand at 343.664 kb on + strand at 343.695 kb on + strand at 343.696 kb on - strand at 343.696 kb on - strand at 343.741 kb on + strand at 343.741 kb on + strand at 343.741 kb on + strand at 343.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 340,205 - HMPREF1078_RS16075 0.60 +0.3 340,205 - HMPREF1078_RS16075 0.60 +0.6 340,229 + HMPREF1078_RS16075 0.61 -1.0 340,269 - HMPREF1078_RS16075 0.63 -2.1 340,327 - HMPREF1078_RS16075 0.66 -0.5 340,344 + HMPREF1078_RS16075 0.67 -0.5 340,344 + HMPREF1078_RS16075 0.67 +0.6 340,346 + HMPREF1078_RS16075 0.67 +0.2 340,347 - HMPREF1078_RS16075 0.67 +0.6 340,382 + HMPREF1078_RS16075 0.69 -0.2 340,495 - HMPREF1078_RS16075 0.74 -0.2 340,495 - HMPREF1078_RS16075 0.74 +0.4 340,502 + HMPREF1078_RS16075 0.74 +0.7 340,606 + HMPREF1078_RS16075 0.79 -1.3 340,607 - HMPREF1078_RS16075 0.79 +0.6 340,616 - HMPREF1078_RS16075 0.80 +0.4 340,624 + HMPREF1078_RS16075 0.80 -1.0 340,647 + HMPREF1078_RS16075 0.81 -0.0 340,647 + HMPREF1078_RS16075 0.81 -0.2 340,659 + HMPREF1078_RS16075 0.82 +0.0 340,753 - HMPREF1078_RS16075 0.86 -0.6 340,826 + HMPREF1078_RS16075 0.89 +0.8 340,826 + HMPREF1078_RS16075 0.89 -0.3 340,826 + HMPREF1078_RS16075 0.89 +2.1 340,827 - HMPREF1078_RS16075 0.90 -0.7 340,881 + -0.6 340,882 - -0.8 340,889 - +1.5 340,889 - -0.8 340,889 - -0.8 340,889 - -0.1 340,936 - -1.0 341,081 + +0.7 341,081 + +0.1 341,123 + +0.8 341,142 + +0.6 341,143 - +0.5 341,143 - -0.5 341,150 - -0.1 341,151 + -1.3 341,152 - -0.0 341,187 + +0.7 341,188 - -1.1 341,400 + HMPREF1078_RS16080 0.16 -1.8 341,497 - HMPREF1078_RS16080 0.22 +0.3 341,497 - HMPREF1078_RS16080 0.22 -0.3 341,497 - HMPREF1078_RS16080 0.22 +0.7 341,646 + HMPREF1078_RS16080 0.31 +0.5 341,647 - HMPREF1078_RS16080 0.31 -1.6 341,737 - HMPREF1078_RS16080 0.37 -0.7 341,841 - HMPREF1078_RS16080 0.43 +1.2 341,870 - HMPREF1078_RS16080 0.45 -0.4 341,875 - HMPREF1078_RS16080 0.45 +0.2 342,054 + HMPREF1078_RS16080 0.57 +0.1 342,055 - HMPREF1078_RS16080 0.57 -3.6 342,141 + HMPREF1078_RS16080 0.62 -2.1 342,141 + HMPREF1078_RS16080 0.62 -0.8 342,141 + HMPREF1078_RS16080 0.62 +1.1 342,142 - HMPREF1078_RS16080 0.62 -0.8 342,143 + HMPREF1078_RS16080 0.62 -0.1 342,143 + HMPREF1078_RS16080 0.62 -1.8 342,143 + HMPREF1078_RS16080 0.62 -0.5 342,143 + HMPREF1078_RS16080 0.62 +2.5 342,144 - HMPREF1078_RS16080 0.62 -0.7 342,144 - HMPREF1078_RS16080 0.62 -2.3 342,188 - HMPREF1078_RS16080 0.65 +2.0 342,427 + HMPREF1078_RS16080 0.80 -0.1 342,427 + HMPREF1078_RS16080 0.80 +0.0 342,428 - HMPREF1078_RS16080 0.80 +0.9 342,428 - HMPREF1078_RS16080 0.80 -2.2 342,428 - HMPREF1078_RS16080 0.80 -1.7 342,431 + HMPREF1078_RS16080 0.80 -1.2 342,432 - HMPREF1078_RS16080 0.80 -2.1 342,432 - HMPREF1078_RS16080 0.80 -0.8 342,432 - HMPREF1078_RS16080 0.80 -2.8 342,435 + HMPREF1078_RS16080 0.80 -1.2 342,480 + HMPREF1078_RS16080 0.83 +0.2 342,480 + HMPREF1078_RS16080 0.83 -0.5 342,481 - HMPREF1078_RS16080 0.83 -1.3 342,481 - HMPREF1078_RS16080 0.83 +0.1 342,481 - HMPREF1078_RS16080 0.83 -0.3 342,538 - HMPREF1078_RS16080 0.87 -2.3 342,538 - HMPREF1078_RS16080 0.87 +0.5 342,561 + HMPREF1078_RS16080 0.88 +0.2 342,597 + -0.7 342,681 + +0.9 342,754 - -3.1 342,772 + -1.2 342,802 + -0.5 342,804 + -1.3 342,804 + +0.3 342,805 - -0.3 342,805 - -2.6 342,805 - +0.7 342,805 - -1.8 342,856 - +0.3 342,856 - +0.2 342,888 + +0.5 342,890 + +1.2 342,891 - +0.4 342,896 + -0.4 342,896 + +2.4 342,896 + -0.2 342,901 + +0.4 342,932 + +0.7 342,964 - HMPREF1078_RS16085 0.12 -0.1 342,964 - HMPREF1078_RS16085 0.12 +0.4 342,982 - HMPREF1078_RS16085 0.14 -0.2 343,134 + HMPREF1078_RS16085 0.34 +0.1 343,149 + HMPREF1078_RS16085 0.36 +0.9 343,154 + HMPREF1078_RS16085 0.37 +0.1 343,154 + HMPREF1078_RS16085 0.37 +0.1 343,154 + HMPREF1078_RS16085 0.37 +0.9 343,155 - HMPREF1078_RS16085 0.37 +0.4 343,160 + HMPREF1078_RS16085 0.37 +1.3 343,161 - HMPREF1078_RS16085 0.38 -0.2 343,201 - HMPREF1078_RS16085 0.43 +0.4 343,201 - HMPREF1078_RS16085 0.43 +0.4 343,205 - HMPREF1078_RS16085 0.43 -0.2 343,205 - HMPREF1078_RS16085 0.43 +0.3 343,206 + HMPREF1078_RS16085 0.43 +1.2 343,207 - HMPREF1078_RS16085 0.44 +0.7 343,210 + HMPREF1078_RS16085 0.44 +2.1 343,257 + HMPREF1078_RS16085 0.50 +0.4 343,257 + HMPREF1078_RS16085 0.50 +1.0 343,258 - HMPREF1078_RS16085 0.50 +0.7 343,318 + HMPREF1078_RS16085 0.58 -0.4 343,319 - HMPREF1078_RS16085 0.58 +0.4 343,322 + HMPREF1078_RS16085 0.59 -1.3 343,322 + HMPREF1078_RS16085 0.59 +1.9 343,381 + HMPREF1078_RS16085 0.66 +1.1 343,381 + HMPREF1078_RS16085 0.66 +1.3 343,382 - HMPREF1078_RS16085 0.66 +0.7 343,382 - HMPREF1078_RS16085 0.66 +1.5 343,383 + HMPREF1078_RS16085 0.67 -0.2 343,383 + HMPREF1078_RS16085 0.67 -0.8 343,384 - HMPREF1078_RS16085 0.67 +0.4 343,427 + HMPREF1078_RS16085 0.72 +0.5 343,428 - HMPREF1078_RS16085 0.72 +0.1 343,428 - HMPREF1078_RS16085 0.72 -0.2 343,452 + HMPREF1078_RS16085 0.76 +0.4 343,452 + HMPREF1078_RS16085 0.76 -0.5 343,453 - HMPREF1078_RS16085 0.76 +0.6 343,453 - HMPREF1078_RS16085 0.76 +0.4 343,582 + +0.5 343,664 + -1.3 343,695 + -0.2 343,696 - -0.2 343,696 - +0.0 343,741 + +0.1 343,741 + +0.9 343,741 + -0.2 343,742 - +0.4
Or see this region's nucleotide sequence