Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10215

Experiment: D-Galactose 10 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS10210 and HMPREF1078_RS10215 are separated by 9 nucleotidesHMPREF1078_RS10215 and HMPREF1078_RS10220 are separated by 2 nucleotides HMPREF1078_RS10210: HMPREF1078_RS10210 - ABC transporter permease, at 668,834 to 670,054 _RS10210 HMPREF1078_RS10215: HMPREF1078_RS10215 - ABC transporter permease, at 670,064 to 671,263 _RS10215 HMPREF1078_RS10220: HMPREF1078_RS10220 - efflux RND transporter periplasmic adaptor subunit, at 671,266 to 672,261 _RS10220 Position (kb) 670 671 672Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 669.229 kb on + strand, within HMPREF1078_RS10210at 669.230 kb on - strand, within HMPREF1078_RS10210at 669.230 kb on - strand, within HMPREF1078_RS10210at 669.237 kb on + strand, within HMPREF1078_RS10210at 669.238 kb on - strand, within HMPREF1078_RS10210at 669.239 kb on + strand, within HMPREF1078_RS10210at 669.240 kb on - strand, within HMPREF1078_RS10210at 669.290 kb on + strand, within HMPREF1078_RS10210at 669.291 kb on - strand, within HMPREF1078_RS10210at 669.291 kb on - strand, within HMPREF1078_RS10210at 669.313 kb on - strand, within HMPREF1078_RS10210at 669.319 kb on + strand, within HMPREF1078_RS10210at 669.319 kb on + strand, within HMPREF1078_RS10210at 669.320 kb on - strand, within HMPREF1078_RS10210at 669.324 kb on + strand, within HMPREF1078_RS10210at 669.431 kb on - strand, within HMPREF1078_RS10210at 669.522 kb on + strand, within HMPREF1078_RS10210at 669.522 kb on + strand, within HMPREF1078_RS10210at 669.523 kb on - strand, within HMPREF1078_RS10210at 669.564 kb on - strand, within HMPREF1078_RS10210at 669.612 kb on + strand, within HMPREF1078_RS10210at 669.667 kb on - strand, within HMPREF1078_RS10210at 669.669 kb on + strand, within HMPREF1078_RS10210at 669.670 kb on - strand, within HMPREF1078_RS10210at 669.670 kb on - strand, within HMPREF1078_RS10210at 669.693 kb on + strand, within HMPREF1078_RS10210at 669.693 kb on + strand, within HMPREF1078_RS10210at 669.694 kb on - strand, within HMPREF1078_RS10210at 669.694 kb on - strand, within HMPREF1078_RS10210at 669.694 kb on - strand, within HMPREF1078_RS10210at 669.694 kb on - strand, within HMPREF1078_RS10210at 669.788 kb on - strand, within HMPREF1078_RS10210at 669.914 kb on - strand, within HMPREF1078_RS10210at 669.914 kb on - strand, within HMPREF1078_RS10210at 669.933 kb on + strandat 669.934 kb on - strandat 669.937 kb on + strandat 669.937 kb on + strandat 669.938 kb on - strandat 669.939 kb on + strandat 669.939 kb on + strandat 669.939 kb on + strandat 669.945 kb on + strandat 669.996 kb on + strandat 669.996 kb on + strandat 669.997 kb on - strandat 670.029 kb on - strandat 670.029 kb on - strandat 670.037 kb on + strandat 670.038 kb on - strandat 670.038 kb on - strandat 670.041 kb on - strandat 670.048 kb on + strandat 670.055 kb on - strandat 670.055 kb on - strandat 670.164 kb on + strandat 670.165 kb on - strandat 670.215 kb on + strand, within HMPREF1078_RS10215at 670.216 kb on - strand, within HMPREF1078_RS10215at 670.218 kb on - strand, within HMPREF1078_RS10215at 670.218 kb on - strand, within HMPREF1078_RS10215at 670.248 kb on + strand, within HMPREF1078_RS10215at 670.249 kb on - strand, within HMPREF1078_RS10215at 670.257 kb on + strand, within HMPREF1078_RS10215at 670.258 kb on - strand, within HMPREF1078_RS10215at 670.258 kb on - strand, within HMPREF1078_RS10215at 670.345 kb on + strand, within HMPREF1078_RS10215at 670.345 kb on + strand, within HMPREF1078_RS10215at 670.346 kb on - strand, within HMPREF1078_RS10215at 670.352 kb on - strand, within HMPREF1078_RS10215at 670.354 kb on + strand, within HMPREF1078_RS10215at 670.458 kb on - strand, within HMPREF1078_RS10215at 670.465 kb on + strand, within HMPREF1078_RS10215at 670.465 kb on + strand, within HMPREF1078_RS10215at 670.483 kb on - strand, within HMPREF1078_RS10215at 670.493 kb on + strand, within HMPREF1078_RS10215at 670.493 kb on + strand, within HMPREF1078_RS10215at 670.513 kb on + strand, within HMPREF1078_RS10215at 670.522 kb on - strand, within HMPREF1078_RS10215at 670.640 kb on - strand, within HMPREF1078_RS10215at 670.853 kb on + strand, within HMPREF1078_RS10215at 670.860 kb on - strand, within HMPREF1078_RS10215at 670.870 kb on - strand, within HMPREF1078_RS10215at 670.870 kb on - strand, within HMPREF1078_RS10215at 670.870 kb on - strand, within HMPREF1078_RS10215at 670.875 kb on + strand, within HMPREF1078_RS10215at 670.876 kb on - strand, within HMPREF1078_RS10215at 670.879 kb on - strand, within HMPREF1078_RS10215at 670.945 kb on - strand, within HMPREF1078_RS10215at 670.950 kb on + strand, within HMPREF1078_RS10215at 670.950 kb on + strand, within HMPREF1078_RS10215at 670.951 kb on - strand, within HMPREF1078_RS10215at 670.952 kb on + strand, within HMPREF1078_RS10215at 670.952 kb on + strand, within HMPREF1078_RS10215at 670.953 kb on - strand, within HMPREF1078_RS10215at 670.953 kb on - strand, within HMPREF1078_RS10215at 671.009 kb on + strand, within HMPREF1078_RS10215at 671.065 kb on + strand, within HMPREF1078_RS10215at 671.065 kb on + strand, within HMPREF1078_RS10215at 671.066 kb on - strand, within HMPREF1078_RS10215at 671.066 kb on - strand, within HMPREF1078_RS10215at 671.093 kb on + strand, within HMPREF1078_RS10215at 671.140 kb on + strand, within HMPREF1078_RS10215at 671.198 kb on + strandat 671.199 kb on - strandat 671.246 kb on - strandat 671.271 kb on + strandat 671.272 kb on - strandat 671.345 kb on - strandat 671.355 kb on + strandat 671.356 kb on - strandat 671.356 kb on - strandat 671.366 kb on + strand, within HMPREF1078_RS10220at 671.367 kb on - strand, within HMPREF1078_RS10220at 671.367 kb on - strand, within HMPREF1078_RS10220at 671.406 kb on + strand, within HMPREF1078_RS10220at 671.411 kb on - strand, within HMPREF1078_RS10220at 671.533 kb on - strand, within HMPREF1078_RS10220at 671.533 kb on - strand, within HMPREF1078_RS10220at 671.566 kb on - strand, within HMPREF1078_RS10220at 671.582 kb on - strand, within HMPREF1078_RS10220at 671.726 kb on - strand, within HMPREF1078_RS10220at 671.795 kb on + strand, within HMPREF1078_RS10220at 671.795 kb on + strand, within HMPREF1078_RS10220at 671.795 kb on + strand, within HMPREF1078_RS10220at 671.795 kb on + strand, within HMPREF1078_RS10220at 671.795 kb on + strand, within HMPREF1078_RS10220at 671.796 kb on - strand, within HMPREF1078_RS10220at 671.797 kb on + strand, within HMPREF1078_RS10220at 671.797 kb on + strand, within HMPREF1078_RS10220at 671.845 kb on - strand, within HMPREF1078_RS10220at 671.868 kb on - strand, within HMPREF1078_RS10220at 672.091 kb on - strand, within HMPREF1078_RS10220at 672.091 kb on - strand, within HMPREF1078_RS10220at 672.120 kb on + strand, within HMPREF1078_RS10220at 672.120 kb on + strand, within HMPREF1078_RS10220at 672.120 kb on + strand, within HMPREF1078_RS10220at 672.120 kb on + strand, within HMPREF1078_RS10220at 672.120 kb on + strand, within HMPREF1078_RS10220at 672.120 kb on + strand, within HMPREF1078_RS10220at 672.121 kb on - strand, within HMPREF1078_RS10220at 672.121 kb on - strand, within HMPREF1078_RS10220at 672.121 kb on - strand, within HMPREF1078_RS10220at 672.121 kb on - strand, within HMPREF1078_RS10220at 672.121 kb on - strand, within HMPREF1078_RS10220at 672.121 kb on - strand, within HMPREF1078_RS10220at 672.121 kb on - strand, within HMPREF1078_RS10220at 672.124 kb on + strand, within HMPREF1078_RS10220at 672.124 kb on + strand, within HMPREF1078_RS10220at 672.125 kb on - strand, within HMPREF1078_RS10220at 672.125 kb on - strand, within HMPREF1078_RS10220at 672.125 kb on - strand, within HMPREF1078_RS10220at 672.166 kb on - strandat 672.183 kb on + strandat 672.220 kb on + strandat 672.221 kb on - strandat 672.223 kb on + strandat 672.223 kb on + strandat 672.224 kb on - strandat 672.224 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C)
remove
669,229 + HMPREF1078_RS10210 0.32 +0.1
669,230 - HMPREF1078_RS10210 0.32 +0.5
669,230 - HMPREF1078_RS10210 0.32 -0.8
669,237 + HMPREF1078_RS10210 0.33 -0.6
669,238 - HMPREF1078_RS10210 0.33 -1.0
669,239 + HMPREF1078_RS10210 0.33 -1.0
669,240 - HMPREF1078_RS10210 0.33 -0.7
669,290 + HMPREF1078_RS10210 0.37 +0.5
669,291 - HMPREF1078_RS10210 0.37 +0.7
669,291 - HMPREF1078_RS10210 0.37 +0.6
669,313 - HMPREF1078_RS10210 0.39 +0.4
669,319 + HMPREF1078_RS10210 0.40 -0.2
669,319 + HMPREF1078_RS10210 0.40 -0.4
669,320 - HMPREF1078_RS10210 0.40 +0.6
669,324 + HMPREF1078_RS10210 0.40 -0.3
669,431 - HMPREF1078_RS10210 0.49 -0.0
669,522 + HMPREF1078_RS10210 0.56 -0.0
669,522 + HMPREF1078_RS10210 0.56 +1.6
669,523 - HMPREF1078_RS10210 0.56 +0.1
669,564 - HMPREF1078_RS10210 0.60 +0.8
669,612 + HMPREF1078_RS10210 0.64 -0.5
669,667 - HMPREF1078_RS10210 0.68 -0.8
669,669 + HMPREF1078_RS10210 0.68 -0.3
669,670 - HMPREF1078_RS10210 0.68 -0.7
669,670 - HMPREF1078_RS10210 0.68 -0.8
669,693 + HMPREF1078_RS10210 0.70 -1.4
669,693 + HMPREF1078_RS10210 0.70 -0.7
669,694 - HMPREF1078_RS10210 0.70 -0.5
669,694 - HMPREF1078_RS10210 0.70 +0.8
669,694 - HMPREF1078_RS10210 0.70 +0.2
669,694 - HMPREF1078_RS10210 0.70 +0.2
669,788 - HMPREF1078_RS10210 0.78 +0.1
669,914 - HMPREF1078_RS10210 0.88 -2.7
669,914 - HMPREF1078_RS10210 0.88 +0.3
669,933 + +1.6
669,934 - +0.0
669,937 + -0.3
669,937 + +0.2
669,938 - +0.2
669,939 + -1.1
669,939 + +0.1
669,939 + -0.2
669,945 + +1.0
669,996 + -0.6
669,996 + +0.0
669,997 - +0.7
670,029 - +1.4
670,029 - +0.2
670,037 + +0.4
670,038 - -0.8
670,038 - +2.1
670,041 - -0.0
670,048 + -0.8
670,055 - +0.2
670,055 - +0.2
670,164 + +0.7
670,165 - -0.6
670,215 + HMPREF1078_RS10215 0.13 -0.1
670,216 - HMPREF1078_RS10215 0.13 -0.7
670,218 - HMPREF1078_RS10215 0.13 +1.3
670,218 - HMPREF1078_RS10215 0.13 -0.7
670,248 + HMPREF1078_RS10215 0.15 +1.8
670,249 - HMPREF1078_RS10215 0.15 -0.2
670,257 + HMPREF1078_RS10215 0.16 -0.4
670,258 - HMPREF1078_RS10215 0.16 -0.1
670,258 - HMPREF1078_RS10215 0.16 -0.1
670,345 + HMPREF1078_RS10215 0.23 -1.4
670,345 + HMPREF1078_RS10215 0.23 -0.1
670,346 - HMPREF1078_RS10215 0.23 +1.8
670,352 - HMPREF1078_RS10215 0.24 +0.8
670,354 + HMPREF1078_RS10215 0.24 +0.2
670,458 - HMPREF1078_RS10215 0.33 -0.8
670,465 + HMPREF1078_RS10215 0.33 +1.0
670,465 + HMPREF1078_RS10215 0.33 -0.0
670,483 - HMPREF1078_RS10215 0.35 +2.1
670,493 + HMPREF1078_RS10215 0.36 -0.1
670,493 + HMPREF1078_RS10215 0.36 -0.2
670,513 + HMPREF1078_RS10215 0.37 -0.6
670,522 - HMPREF1078_RS10215 0.38 -0.8
670,640 - HMPREF1078_RS10215 0.48 -0.2
670,853 + HMPREF1078_RS10215 0.66 -1.2
670,860 - HMPREF1078_RS10215 0.66 -1.1
670,870 - HMPREF1078_RS10215 0.67 +0.6
670,870 - HMPREF1078_RS10215 0.67 +1.1
670,870 - HMPREF1078_RS10215 0.67 +0.2
670,875 + HMPREF1078_RS10215 0.68 -1.8
670,876 - HMPREF1078_RS10215 0.68 +0.2
670,879 - HMPREF1078_RS10215 0.68 -0.9
670,945 - HMPREF1078_RS10215 0.73 +0.1
670,950 + HMPREF1078_RS10215 0.74 -2.3
670,950 + HMPREF1078_RS10215 0.74 -0.4
670,951 - HMPREF1078_RS10215 0.74 -1.6
670,952 + HMPREF1078_RS10215 0.74 -1.3
670,952 + HMPREF1078_RS10215 0.74 +1.0
670,953 - HMPREF1078_RS10215 0.74 -1.0
670,953 - HMPREF1078_RS10215 0.74 +1.4
671,009 + HMPREF1078_RS10215 0.79 -0.5
671,065 + HMPREF1078_RS10215 0.83 -0.0
671,065 + HMPREF1078_RS10215 0.83 -0.3
671,066 - HMPREF1078_RS10215 0.83 -1.1
671,066 - HMPREF1078_RS10215 0.83 +0.4
671,093 + HMPREF1078_RS10215 0.86 +0.5
671,140 + HMPREF1078_RS10215 0.90 -0.8
671,198 + -0.2
671,199 - -3.2
671,246 - +0.6
671,271 + -0.7
671,272 - +1.2
671,345 - -0.1
671,355 + -1.1
671,356 - -0.7
671,356 - +0.1
671,366 + HMPREF1078_RS10220 0.10 +0.5
671,367 - HMPREF1078_RS10220 0.10 +0.4
671,367 - HMPREF1078_RS10220 0.10 +0.2
671,406 + HMPREF1078_RS10220 0.14 -0.0
671,411 - HMPREF1078_RS10220 0.15 +0.5
671,533 - HMPREF1078_RS10220 0.27 -0.7
671,533 - HMPREF1078_RS10220 0.27 +1.6
671,566 - HMPREF1078_RS10220 0.30 -0.1
671,582 - HMPREF1078_RS10220 0.32 -0.6
671,726 - HMPREF1078_RS10220 0.46 +0.8
671,795 + HMPREF1078_RS10220 0.53 -0.1
671,795 + HMPREF1078_RS10220 0.53 -1.0
671,795 + HMPREF1078_RS10220 0.53 +0.1
671,795 + HMPREF1078_RS10220 0.53 +2.3
671,795 + HMPREF1078_RS10220 0.53 -0.7
671,796 - HMPREF1078_RS10220 0.53 +0.7
671,797 + HMPREF1078_RS10220 0.53 -2.3
671,797 + HMPREF1078_RS10220 0.53 -0.0
671,845 - HMPREF1078_RS10220 0.58 -1.6
671,868 - HMPREF1078_RS10220 0.60 +0.6
672,091 - HMPREF1078_RS10220 0.83 -0.4
672,091 - HMPREF1078_RS10220 0.83 +0.4
672,120 + HMPREF1078_RS10220 0.86 +0.3
672,120 + HMPREF1078_RS10220 0.86 +0.9
672,120 + HMPREF1078_RS10220 0.86 +0.2
672,120 + HMPREF1078_RS10220 0.86 +1.6
672,120 + HMPREF1078_RS10220 0.86 -0.2
672,120 + HMPREF1078_RS10220 0.86 -0.2
672,121 - HMPREF1078_RS10220 0.86 +0.2
672,121 - HMPREF1078_RS10220 0.86 -1.8
672,121 - HMPREF1078_RS10220 0.86 -0.7
672,121 - HMPREF1078_RS10220 0.86 -1.3
672,121 - HMPREF1078_RS10220 0.86 -1.2
672,121 - HMPREF1078_RS10220 0.86 -1.1
672,121 - HMPREF1078_RS10220 0.86 -0.1
672,124 + HMPREF1078_RS10220 0.86 -0.8
672,124 + HMPREF1078_RS10220 0.86 +0.5
672,125 - HMPREF1078_RS10220 0.86 +0.4
672,125 - HMPREF1078_RS10220 0.86 +0.2
672,125 - HMPREF1078_RS10220 0.86 -1.2
672,166 - +0.9
672,183 + +0.8
672,220 + -0.2
672,221 - -1.5
672,223 + -0.6
672,223 + -0.6
672,224 - -0.9
672,224 - -0.1

Or see this region's nucleotide sequence