Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08040 and HMPREF1078_RS08045 are separated by 10 nucleotides HMPREF1078_RS08045 and HMPREF1078_RS08050 are separated by 167 nucleotides HMPREF1078_RS08050 and HMPREF1078_RS08055 are separated by 4 nucleotides
HMPREF1078_RS08040: HMPREF1078_RS08040 - winged helix DNA-binding domain-containing protein, at 170,637 to 171,707
_RS08040
HMPREF1078_RS08045: HMPREF1078_RS08045 - L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha, at 171,718 to 173,010
_RS08045
HMPREF1078_RS08050: HMPREF1078_RS08050 - membrane protein, at 173,178 to 173,468
_RS08050
HMPREF1078_RS08055: HMPREF1078_RS08055 - glycine zipper family protein, at 173,473 to 174,135
_RS08055
Position (kb) 171
172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 170.803 kb on + strand, within HMPREF1078_RS08040 at 170.804 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.887 kb on + strand, within HMPREF1078_RS08040 at 170.888 kb on - strand, within HMPREF1078_RS08040 at 170.888 kb on - strand, within HMPREF1078_RS08040 at 170.899 kb on + strand, within HMPREF1078_RS08040 at 170.900 kb on - strand, within HMPREF1078_RS08040 at 170.908 kb on + strand, within HMPREF1078_RS08040 at 170.909 kb on - strand, within HMPREF1078_RS08040 at 170.972 kb on - strand, within HMPREF1078_RS08040 at 171.081 kb on - strand, within HMPREF1078_RS08040 at 171.108 kb on + strand, within HMPREF1078_RS08040 at 171.184 kb on + strand, within HMPREF1078_RS08040 at 171.184 kb on + strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.204 kb on - strand, within HMPREF1078_RS08040 at 171.204 kb on - strand, within HMPREF1078_RS08040 at 171.208 kb on - strand, within HMPREF1078_RS08040 at 171.253 kb on + strand, within HMPREF1078_RS08040 at 171.254 kb on - strand, within HMPREF1078_RS08040 at 171.259 kb on - strand, within HMPREF1078_RS08040 at 171.359 kb on + strand, within HMPREF1078_RS08040 at 171.360 kb on - strand, within HMPREF1078_RS08040 at 171.504 kb on + strand, within HMPREF1078_RS08040 at 171.504 kb on + strand, within HMPREF1078_RS08040 at 171.504 kb on + strand, within HMPREF1078_RS08040 at 171.504 kb on + strand, within HMPREF1078_RS08040 at 171.505 kb on - strand, within HMPREF1078_RS08040 at 171.506 kb on + strand, within HMPREF1078_RS08040 at 171.507 kb on - strand, within HMPREF1078_RS08040 at 171.507 kb on - strand, within HMPREF1078_RS08040 at 171.602 kb on + strand at 171.602 kb on + strand at 171.602 kb on + strand at 171.602 kb on + strand at 171.602 kb on + strand at 171.603 kb on - strand at 171.603 kb on - strand at 171.603 kb on - strand at 171.603 kb on - strand at 171.605 kb on - strand at 171.707 kb on + strand at 171.707 kb on + strand at 171.707 kb on + strand at 171.707 kb on + strand at 171.708 kb on - strand at 171.738 kb on + strand at 171.787 kb on - strand at 171.885 kb on + strand, within HMPREF1078_RS08045 at 171.885 kb on + strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.958 kb on - strand, within HMPREF1078_RS08045 at 172.016 kb on + strand, within HMPREF1078_RS08045 at 172.017 kb on - strand, within HMPREF1078_RS08045 at 172.017 kb on - strand, within HMPREF1078_RS08045 at 172.020 kb on + strand, within HMPREF1078_RS08045 at 172.020 kb on + strand, within HMPREF1078_RS08045 at 172.097 kb on + strand, within HMPREF1078_RS08045 at 172.098 kb on - strand, within HMPREF1078_RS08045 at 172.293 kb on + strand, within HMPREF1078_RS08045 at 172.294 kb on - strand, within HMPREF1078_RS08045 at 172.296 kb on - strand, within HMPREF1078_RS08045 at 172.296 kb on - strand, within HMPREF1078_RS08045 at 172.313 kb on + strand, within HMPREF1078_RS08045 at 172.313 kb on + strand, within HMPREF1078_RS08045 at 172.314 kb on - strand, within HMPREF1078_RS08045 at 172.314 kb on - strand, within HMPREF1078_RS08045 at 172.314 kb on - strand, within HMPREF1078_RS08045 at 172.326 kb on - strand, within HMPREF1078_RS08045 at 172.326 kb on - strand, within HMPREF1078_RS08045 at 172.353 kb on + strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.461 kb on - strand, within HMPREF1078_RS08045 at 172.468 kb on - strand, within HMPREF1078_RS08045 at 172.468 kb on - strand, within HMPREF1078_RS08045 at 172.640 kb on + strand, within HMPREF1078_RS08045 at 172.640 kb on + strand, within HMPREF1078_RS08045 at 172.641 kb on - strand, within HMPREF1078_RS08045 at 172.664 kb on - strand, within HMPREF1078_RS08045 at 172.684 kb on - strand, within HMPREF1078_RS08045 at 172.738 kb on + strand, within HMPREF1078_RS08045 at 172.751 kb on + strand, within HMPREF1078_RS08045 at 172.773 kb on + strand, within HMPREF1078_RS08045 at 172.773 kb on + strand, within HMPREF1078_RS08045 at 172.791 kb on + strand, within HMPREF1078_RS08045 at 172.792 kb on - strand, within HMPREF1078_RS08045 at 172.792 kb on - strand, within HMPREF1078_RS08045 at 172.792 kb on - strand, within HMPREF1078_RS08045 at 172.942 kb on - strand at 172.972 kb on + strand at 172.973 kb on - strand at 172.975 kb on + strand at 172.975 kb on + strand at 173.004 kb on + strand at 173.004 kb on + strand at 173.016 kb on + strand at 173.017 kb on - strand at 173.046 kb on + strand at 173.067 kb on + strand at 173.067 kb on + strand at 173.067 kb on + strand at 173.071 kb on + strand at 173.090 kb on - strand at 173.093 kb on + strand at 173.094 kb on - strand at 173.159 kb on - strand at 173.197 kb on + strand at 173.205 kb on - strand at 173.205 kb on - strand at 173.205 kb on - strand at 173.209 kb on + strand, within HMPREF1078_RS08050 at 173.209 kb on + strand, within HMPREF1078_RS08050 at 173.309 kb on - strand, within HMPREF1078_RS08050 at 173.316 kb on - strand, within HMPREF1078_RS08050 at 173.356 kb on + strand, within HMPREF1078_RS08050 at 173.356 kb on + strand, within HMPREF1078_RS08050 at 173.356 kb on + strand, within HMPREF1078_RS08050 at 173.357 kb on - strand, within HMPREF1078_RS08050 at 173.357 kb on - strand, within HMPREF1078_RS08050 at 173.357 kb on - strand, within HMPREF1078_RS08050 at 173.395 kb on + strand, within HMPREF1078_RS08050 at 173.401 kb on + strand, within HMPREF1078_RS08050 at 173.408 kb on - strand, within HMPREF1078_RS08050 at 173.413 kb on + strand, within HMPREF1078_RS08050 at 173.414 kb on - strand, within HMPREF1078_RS08050 at 173.414 kb on - strand, within HMPREF1078_RS08050 at 173.414 kb on - strand, within HMPREF1078_RS08050 at 173.414 kb on - strand, within HMPREF1078_RS08050 at 173.422 kb on + strand, within HMPREF1078_RS08050 at 173.502 kb on + strand at 173.598 kb on + strand, within HMPREF1078_RS08055 at 173.605 kb on - strand, within HMPREF1078_RS08055 at 173.606 kb on + strand, within HMPREF1078_RS08055 at 173.606 kb on + strand, within HMPREF1078_RS08055 at 173.606 kb on + strand, within HMPREF1078_RS08055 at 173.607 kb on - strand, within HMPREF1078_RS08055 at 173.607 kb on - strand, within HMPREF1078_RS08055 at 173.614 kb on - strand, within HMPREF1078_RS08055 at 173.639 kb on - strand, within HMPREF1078_RS08055 at 173.746 kb on - strand, within HMPREF1078_RS08055 at 173.767 kb on + strand, within HMPREF1078_RS08055 at 173.808 kb on + strand, within HMPREF1078_RS08055 at 173.808 kb on + strand, within HMPREF1078_RS08055 at 173.854 kb on - strand, within HMPREF1078_RS08055 at 173.855 kb on + strand, within HMPREF1078_RS08055 at 173.856 kb on - strand, within HMPREF1078_RS08055 at 173.856 kb on - strand, within HMPREF1078_RS08055 at 173.856 kb on - strand, within HMPREF1078_RS08055 at 173.885 kb on - strand, within HMPREF1078_RS08055 at 173.898 kb on + strand, within HMPREF1078_RS08055 at 173.898 kb on + strand, within HMPREF1078_RS08055 at 173.898 kb on + strand, within HMPREF1078_RS08055
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 170,803 + HMPREF1078_RS08040 0.15 +0.9 170,804 - HMPREF1078_RS08040 0.16 -0.4 170,835 - HMPREF1078_RS08040 0.18 -0.3 170,835 - HMPREF1078_RS08040 0.18 +0.3 170,835 - HMPREF1078_RS08040 0.18 -0.1 170,887 + HMPREF1078_RS08040 0.23 -0.8 170,888 - HMPREF1078_RS08040 0.23 +0.8 170,888 - HMPREF1078_RS08040 0.23 -1.4 170,899 + HMPREF1078_RS08040 0.24 -1.0 170,900 - HMPREF1078_RS08040 0.25 +0.9 170,908 + HMPREF1078_RS08040 0.25 +0.6 170,909 - HMPREF1078_RS08040 0.25 -1.4 170,972 - HMPREF1078_RS08040 0.31 -0.2 171,081 - HMPREF1078_RS08040 0.41 +0.7 171,108 + HMPREF1078_RS08040 0.44 -0.8 171,184 + HMPREF1078_RS08040 0.51 +0.3 171,184 + HMPREF1078_RS08040 0.51 +1.0 171,185 - HMPREF1078_RS08040 0.51 +0.3 171,185 - HMPREF1078_RS08040 0.51 -0.0 171,185 - HMPREF1078_RS08040 0.51 +0.1 171,204 - HMPREF1078_RS08040 0.53 -0.3 171,204 - HMPREF1078_RS08040 0.53 +0.8 171,208 - HMPREF1078_RS08040 0.53 +0.4 171,253 + HMPREF1078_RS08040 0.58 +0.8 171,254 - HMPREF1078_RS08040 0.58 -0.2 171,259 - HMPREF1078_RS08040 0.58 +0.7 171,359 + HMPREF1078_RS08040 0.67 +0.4 171,360 - HMPREF1078_RS08040 0.68 -2.4 171,504 + HMPREF1078_RS08040 0.81 +0.7 171,504 + HMPREF1078_RS08040 0.81 +1.5 171,504 + HMPREF1078_RS08040 0.81 -0.7 171,504 + HMPREF1078_RS08040 0.81 +1.7 171,505 - HMPREF1078_RS08040 0.81 -0.2 171,506 + HMPREF1078_RS08040 0.81 +0.8 171,507 - HMPREF1078_RS08040 0.81 +1.0 171,507 - HMPREF1078_RS08040 0.81 +1.2 171,602 + -0.3 171,602 + +0.4 171,602 + -0.8 171,602 + -2.3 171,602 + -0.7 171,603 - +0.1 171,603 - -2.2 171,603 - -0.3 171,603 - +0.1 171,605 - -1.6 171,707 + -0.1 171,707 + -0.1 171,707 + +0.1 171,707 + +0.4 171,708 - +0.9 171,738 + -2.6 171,787 - -0.5 171,885 + HMPREF1078_RS08045 0.13 +0.4 171,885 + HMPREF1078_RS08045 0.13 -0.3 171,944 - HMPREF1078_RS08045 0.17 -1.7 171,944 - HMPREF1078_RS08045 0.17 +0.4 171,944 - HMPREF1078_RS08045 0.17 +0.1 171,944 - HMPREF1078_RS08045 0.17 -0.1 171,944 - HMPREF1078_RS08045 0.17 +0.4 171,958 - HMPREF1078_RS08045 0.19 -2.0 172,016 + HMPREF1078_RS08045 0.23 -0.4 172,017 - HMPREF1078_RS08045 0.23 -1.5 172,017 - HMPREF1078_RS08045 0.23 -0.6 172,020 + HMPREF1078_RS08045 0.23 -0.7 172,020 + HMPREF1078_RS08045 0.23 -0.5 172,097 + HMPREF1078_RS08045 0.29 -1.4 172,098 - HMPREF1078_RS08045 0.29 +0.0 172,293 + HMPREF1078_RS08045 0.44 -0.6 172,294 - HMPREF1078_RS08045 0.45 +0.1 172,296 - HMPREF1078_RS08045 0.45 -2.5 172,296 - HMPREF1078_RS08045 0.45 -1.1 172,313 + HMPREF1078_RS08045 0.46 -1.1 172,313 + HMPREF1078_RS08045 0.46 -1.3 172,314 - HMPREF1078_RS08045 0.46 -0.6 172,314 - HMPREF1078_RS08045 0.46 -0.7 172,314 - HMPREF1078_RS08045 0.46 +0.0 172,326 - HMPREF1078_RS08045 0.47 +0.3 172,326 - HMPREF1078_RS08045 0.47 -1.2 172,353 + HMPREF1078_RS08045 0.49 -0.5 172,354 - HMPREF1078_RS08045 0.49 -1.2 172,354 - HMPREF1078_RS08045 0.49 -1.2 172,354 - HMPREF1078_RS08045 0.49 -0.2 172,354 - HMPREF1078_RS08045 0.49 +0.0 172,461 - HMPREF1078_RS08045 0.57 +1.8 172,468 - HMPREF1078_RS08045 0.58 -1.1 172,468 - HMPREF1078_RS08045 0.58 -0.9 172,640 + HMPREF1078_RS08045 0.71 -1.8 172,640 + HMPREF1078_RS08045 0.71 -1.0 172,641 - HMPREF1078_RS08045 0.71 -0.3 172,664 - HMPREF1078_RS08045 0.73 -0.2 172,684 - HMPREF1078_RS08045 0.75 -1.3 172,738 + HMPREF1078_RS08045 0.79 -0.4 172,751 + HMPREF1078_RS08045 0.80 -0.8 172,773 + HMPREF1078_RS08045 0.82 +2.5 172,773 + HMPREF1078_RS08045 0.82 -1.7 172,791 + HMPREF1078_RS08045 0.83 -0.0 172,792 - HMPREF1078_RS08045 0.83 -1.2 172,792 - HMPREF1078_RS08045 0.83 -0.3 172,792 - HMPREF1078_RS08045 0.83 -1.1 172,942 - +0.9 172,972 + -1.7 172,973 - +0.2 172,975 + +0.6 172,975 + -1.2 173,004 + -1.2 173,004 + +0.7 173,016 + -0.9 173,017 - +1.3 173,046 + -0.3 173,067 + +1.8 173,067 + -0.3 173,067 + +0.8 173,071 + +0.5 173,090 - -0.5 173,093 + +1.8 173,094 - +0.0 173,159 - +0.6 173,197 + +0.9 173,205 - -0.7 173,205 - -2.4 173,205 - -2.0 173,209 + HMPREF1078_RS08050 0.11 -0.3 173,209 + HMPREF1078_RS08050 0.11 +1.5 173,309 - HMPREF1078_RS08050 0.45 -0.1 173,316 - HMPREF1078_RS08050 0.47 -1.2 173,356 + HMPREF1078_RS08050 0.61 +0.1 173,356 + HMPREF1078_RS08050 0.61 -1.5 173,356 + HMPREF1078_RS08050 0.61 -0.8 173,357 - HMPREF1078_RS08050 0.62 +0.4 173,357 - HMPREF1078_RS08050 0.62 -1.7 173,357 - HMPREF1078_RS08050 0.62 -0.2 173,395 + HMPREF1078_RS08050 0.75 +0.5 173,401 + HMPREF1078_RS08050 0.77 -1.6 173,408 - HMPREF1078_RS08050 0.79 +0.5 173,413 + HMPREF1078_RS08050 0.81 -0.9 173,414 - HMPREF1078_RS08050 0.81 +0.5 173,414 - HMPREF1078_RS08050 0.81 +0.7 173,414 - HMPREF1078_RS08050 0.81 -0.0 173,414 - HMPREF1078_RS08050 0.81 +0.8 173,422 + HMPREF1078_RS08050 0.84 -0.7 173,502 + +0.3 173,598 + HMPREF1078_RS08055 0.19 +0.2 173,605 - HMPREF1078_RS08055 0.20 +0.2 173,606 + HMPREF1078_RS08055 0.20 +2.1 173,606 + HMPREF1078_RS08055 0.20 +1.6 173,606 + HMPREF1078_RS08055 0.20 +2.1 173,607 - HMPREF1078_RS08055 0.20 -0.9 173,607 - HMPREF1078_RS08055 0.20 -0.3 173,614 - HMPREF1078_RS08055 0.21 -0.1 173,639 - HMPREF1078_RS08055 0.25 +1.1 173,746 - HMPREF1078_RS08055 0.41 -0.1 173,767 + HMPREF1078_RS08055 0.44 +1.2 173,808 + HMPREF1078_RS08055 0.51 +2.1 173,808 + HMPREF1078_RS08055 0.51 +0.1 173,854 - HMPREF1078_RS08055 0.57 -0.4 173,855 + HMPREF1078_RS08055 0.58 -0.6 173,856 - HMPREF1078_RS08055 0.58 +0.1 173,856 - HMPREF1078_RS08055 0.58 -0.1 173,856 - HMPREF1078_RS08055 0.58 -0.3 173,885 - HMPREF1078_RS08055 0.62 +0.0 173,898 + HMPREF1078_RS08055 0.64 +0.4 173,898 + HMPREF1078_RS08055 0.64 -2.8 173,898 + HMPREF1078_RS08055 0.64 -0.8
Or see this region's nucleotide sequence