Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01780 and HMPREF1078_RS01785 are separated by 11 nucleotides HMPREF1078_RS01785 and HMPREF1078_RS19690 are separated by 175 nucleotides HMPREF1078_RS19690 and HMPREF1078_RS19695 overlap by 43 nucleotides
HMPREF1078_RS01780: HMPREF1078_RS01780 - family 78 glycoside hydrolase catalytic domain, at 444,438 to 447,017
_RS01780
HMPREF1078_RS01785: HMPREF1078_RS01785 - alpha-L-rhamnosidase C-terminal domain-containing protein, at 447,029 to 449,245
_RS01785
HMPREF1078_RS19690: HMPREF1078_RS19690 - energy transducer TonB, at 449,421 to 449,954
_RS19690
HMPREF1078_RS19695: HMPREF1078_RS19695 - hypothetical protein, at 449,912 to 450,565
_RS19695
Position (kb) 447
448
449
450 Strain fitness (log2 ratio) -2
-1
0
1
2 at 446.090 kb on + strand, within HMPREF1078_RS01780 at 446.090 kb on + strand, within HMPREF1078_RS01780 at 446.090 kb on + strand, within HMPREF1078_RS01780 at 446.112 kb on - strand, within HMPREF1078_RS01780 at 446.154 kb on - strand, within HMPREF1078_RS01780 at 446.246 kb on + strand, within HMPREF1078_RS01780 at 446.262 kb on + strand, within HMPREF1078_RS01780 at 446.262 kb on + strand, within HMPREF1078_RS01780 at 446.263 kb on - strand, within HMPREF1078_RS01780 at 446.263 kb on - strand, within HMPREF1078_RS01780 at 446.263 kb on - strand, within HMPREF1078_RS01780 at 446.263 kb on - strand, within HMPREF1078_RS01780 at 446.264 kb on + strand, within HMPREF1078_RS01780 at 446.265 kb on - strand, within HMPREF1078_RS01780 at 446.265 kb on - strand, within HMPREF1078_RS01780 at 446.265 kb on - strand, within HMPREF1078_RS01780 at 446.271 kb on - strand, within HMPREF1078_RS01780 at 446.278 kb on - strand, within HMPREF1078_RS01780 at 446.412 kb on + strand, within HMPREF1078_RS01780 at 446.413 kb on - strand, within HMPREF1078_RS01780 at 446.413 kb on - strand, within HMPREF1078_RS01780 at 446.451 kb on + strand, within HMPREF1078_RS01780 at 446.455 kb on + strand, within HMPREF1078_RS01780 at 446.603 kb on + strand, within HMPREF1078_RS01780 at 446.603 kb on + strand, within HMPREF1078_RS01780 at 446.604 kb on - strand, within HMPREF1078_RS01780 at 446.664 kb on + strand, within HMPREF1078_RS01780 at 446.666 kb on + strand, within HMPREF1078_RS01780 at 446.666 kb on + strand, within HMPREF1078_RS01780 at 446.666 kb on + strand, within HMPREF1078_RS01780 at 446.667 kb on - strand, within HMPREF1078_RS01780 at 446.693 kb on - strand, within HMPREF1078_RS01780 at 446.781 kb on + strand at 446.782 kb on - strand at 446.782 kb on - strand at 446.863 kb on - strand at 446.863 kb on - strand at 446.949 kb on - strand at 446.997 kb on - strand at 447.026 kb on - strand at 447.068 kb on - strand at 447.175 kb on - strand at 447.291 kb on - strand, within HMPREF1078_RS01785 at 447.303 kb on - strand, within HMPREF1078_RS01785 at 447.319 kb on - strand, within HMPREF1078_RS01785 at 447.480 kb on + strand, within HMPREF1078_RS01785 at 447.480 kb on + strand, within HMPREF1078_RS01785 at 447.480 kb on + strand, within HMPREF1078_RS01785 at 447.481 kb on - strand, within HMPREF1078_RS01785 at 447.482 kb on + strand, within HMPREF1078_RS01785 at 447.483 kb on - strand, within HMPREF1078_RS01785 at 447.538 kb on + strand, within HMPREF1078_RS01785 at 447.539 kb on - strand, within HMPREF1078_RS01785 at 447.539 kb on - strand, within HMPREF1078_RS01785 at 447.670 kb on - strand, within HMPREF1078_RS01785 at 447.687 kb on - strand, within HMPREF1078_RS01785 at 447.687 kb on - strand, within HMPREF1078_RS01785 at 447.702 kb on - strand, within HMPREF1078_RS01785 at 447.702 kb on - strand, within HMPREF1078_RS01785 at 447.733 kb on + strand, within HMPREF1078_RS01785 at 447.740 kb on + strand, within HMPREF1078_RS01785 at 447.741 kb on - strand, within HMPREF1078_RS01785 at 447.756 kb on - strand, within HMPREF1078_RS01785 at 447.777 kb on - strand, within HMPREF1078_RS01785 at 447.777 kb on - strand, within HMPREF1078_RS01785 at 447.830 kb on + strand, within HMPREF1078_RS01785 at 447.848 kb on + strand, within HMPREF1078_RS01785 at 447.867 kb on - strand, within HMPREF1078_RS01785 at 447.893 kb on + strand, within HMPREF1078_RS01785 at 447.932 kb on + strand, within HMPREF1078_RS01785 at 447.934 kb on + strand, within HMPREF1078_RS01785 at 447.935 kb on - strand, within HMPREF1078_RS01785 at 448.065 kb on + strand, within HMPREF1078_RS01785 at 448.066 kb on - strand, within HMPREF1078_RS01785 at 448.066 kb on - strand, within HMPREF1078_RS01785 at 448.068 kb on - strand, within HMPREF1078_RS01785 at 448.088 kb on + strand, within HMPREF1078_RS01785 at 448.088 kb on + strand, within HMPREF1078_RS01785 at 448.089 kb on - strand, within HMPREF1078_RS01785 at 448.089 kb on - strand, within HMPREF1078_RS01785 at 448.160 kb on + strand, within HMPREF1078_RS01785 at 448.183 kb on + strand, within HMPREF1078_RS01785 at 448.184 kb on - strand, within HMPREF1078_RS01785 at 448.206 kb on - strand, within HMPREF1078_RS01785 at 448.305 kb on + strand, within HMPREF1078_RS01785 at 448.322 kb on + strand, within HMPREF1078_RS01785 at 448.323 kb on - strand, within HMPREF1078_RS01785 at 448.332 kb on - strand, within HMPREF1078_RS01785 at 448.334 kb on + strand, within HMPREF1078_RS01785 at 448.335 kb on - strand, within HMPREF1078_RS01785 at 448.335 kb on - strand, within HMPREF1078_RS01785 at 448.337 kb on + strand, within HMPREF1078_RS01785 at 448.338 kb on - strand, within HMPREF1078_RS01785 at 448.339 kb on + strand, within HMPREF1078_RS01785 at 448.352 kb on - strand, within HMPREF1078_RS01785 at 448.370 kb on + strand, within HMPREF1078_RS01785 at 448.388 kb on + strand, within HMPREF1078_RS01785 at 448.402 kb on - strand, within HMPREF1078_RS01785 at 448.410 kb on + strand, within HMPREF1078_RS01785 at 448.411 kb on - strand, within HMPREF1078_RS01785 at 448.589 kb on + strand, within HMPREF1078_RS01785 at 448.589 kb on + strand, within HMPREF1078_RS01785 at 448.589 kb on + strand, within HMPREF1078_RS01785 at 448.590 kb on - strand, within HMPREF1078_RS01785 at 448.637 kb on + strand, within HMPREF1078_RS01785 at 448.655 kb on - strand, within HMPREF1078_RS01785 at 448.769 kb on + strand, within HMPREF1078_RS01785 at 448.865 kb on + strand, within HMPREF1078_RS01785 at 448.865 kb on + strand, within HMPREF1078_RS01785 at 448.871 kb on - strand, within HMPREF1078_RS01785 at 448.877 kb on - strand, within HMPREF1078_RS01785 at 448.878 kb on - strand, within HMPREF1078_RS01785 at 448.996 kb on + strand, within HMPREF1078_RS01785 at 448.996 kb on + strand, within HMPREF1078_RS01785 at 448.996 kb on + strand, within HMPREF1078_RS01785 at 448.996 kb on + strand, within HMPREF1078_RS01785 at 449.067 kb on + strand at 449.068 kb on - strand at 449.068 kb on - strand at 449.068 kb on - strand at 449.068 kb on - strand at 449.071 kb on + strand at 449.072 kb on - strand at 449.088 kb on + strand at 449.088 kb on + strand at 449.089 kb on - strand at 449.223 kb on + strand at 449.224 kb on - strand at 449.247 kb on - strand at 449.255 kb on - strand at 449.293 kb on + strand at 449.294 kb on - strand at 449.452 kb on + strand at 449.453 kb on - strand at 449.453 kb on - strand at 449.457 kb on + strand at 449.458 kb on - strand at 449.458 kb on - strand at 449.550 kb on + strand, within HMPREF1078_RS19690 at 449.682 kb on + strand, within HMPREF1078_RS19690 at 449.682 kb on + strand, within HMPREF1078_RS19690 at 449.718 kb on - strand, within HMPREF1078_RS19690 at 449.786 kb on + strand, within HMPREF1078_RS19690 at 449.862 kb on - strand, within HMPREF1078_RS19690 at 449.874 kb on + strand, within HMPREF1078_RS19690 at 449.874 kb on + strand, within HMPREF1078_RS19690 at 449.875 kb on - strand, within HMPREF1078_RS19690 at 449.908 kb on + strand at 450.117 kb on + strand, within HMPREF1078_RS19695 at 450.176 kb on - strand, within HMPREF1078_RS19695
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 446,090 + HMPREF1078_RS01780 0.64 -1.5 446,090 + HMPREF1078_RS01780 0.64 -0.5 446,090 + HMPREF1078_RS01780 0.64 +0.2 446,112 - HMPREF1078_RS01780 0.65 +1.3 446,154 - HMPREF1078_RS01780 0.67 -0.2 446,246 + HMPREF1078_RS01780 0.70 -0.1 446,262 + HMPREF1078_RS01780 0.71 -0.5 446,262 + HMPREF1078_RS01780 0.71 +0.1 446,263 - HMPREF1078_RS01780 0.71 +0.2 446,263 - HMPREF1078_RS01780 0.71 +0.6 446,263 - HMPREF1078_RS01780 0.71 -0.1 446,263 - HMPREF1078_RS01780 0.71 -0.5 446,264 + HMPREF1078_RS01780 0.71 -1.1 446,265 - HMPREF1078_RS01780 0.71 +0.1 446,265 - HMPREF1078_RS01780 0.71 -0.5 446,265 - HMPREF1078_RS01780 0.71 -0.4 446,271 - HMPREF1078_RS01780 0.71 +0.8 446,278 - HMPREF1078_RS01780 0.71 +0.5 446,412 + HMPREF1078_RS01780 0.77 +1.2 446,413 - HMPREF1078_RS01780 0.77 +1.4 446,413 - HMPREF1078_RS01780 0.77 +0.2 446,451 + HMPREF1078_RS01780 0.78 +0.4 446,455 + HMPREF1078_RS01780 0.78 +0.7 446,603 + HMPREF1078_RS01780 0.84 +0.9 446,603 + HMPREF1078_RS01780 0.84 -0.8 446,604 - HMPREF1078_RS01780 0.84 -1.6 446,664 + HMPREF1078_RS01780 0.86 -0.1 446,666 + HMPREF1078_RS01780 0.86 +1.4 446,666 + HMPREF1078_RS01780 0.86 -0.4 446,666 + HMPREF1078_RS01780 0.86 +0.3 446,667 - HMPREF1078_RS01780 0.86 +0.8 446,693 - HMPREF1078_RS01780 0.87 -1.2 446,781 + +1.2 446,782 - -0.2 446,782 - -1.3 446,863 - -0.4 446,863 - +0.9 446,949 - -0.6 446,997 - +0.5 447,026 - -0.1 447,068 - -2.4 447,175 - -0.1 447,291 - HMPREF1078_RS01785 0.12 +0.6 447,303 - HMPREF1078_RS01785 0.12 -0.7 447,319 - HMPREF1078_RS01785 0.13 -0.2 447,480 + HMPREF1078_RS01785 0.20 -0.7 447,480 + HMPREF1078_RS01785 0.20 -0.1 447,480 + HMPREF1078_RS01785 0.20 +0.9 447,481 - HMPREF1078_RS01785 0.20 +1.1 447,482 + HMPREF1078_RS01785 0.20 -0.6 447,483 - HMPREF1078_RS01785 0.20 +0.2 447,538 + HMPREF1078_RS01785 0.23 -0.8 447,539 - HMPREF1078_RS01785 0.23 -0.3 447,539 - HMPREF1078_RS01785 0.23 -0.6 447,670 - HMPREF1078_RS01785 0.29 -2.0 447,687 - HMPREF1078_RS01785 0.30 +1.2 447,687 - HMPREF1078_RS01785 0.30 +1.4 447,702 - HMPREF1078_RS01785 0.30 +0.4 447,702 - HMPREF1078_RS01785 0.30 +0.9 447,733 + HMPREF1078_RS01785 0.32 +0.4 447,740 + HMPREF1078_RS01785 0.32 -0.4 447,741 - HMPREF1078_RS01785 0.32 -2.1 447,756 - HMPREF1078_RS01785 0.33 +0.7 447,777 - HMPREF1078_RS01785 0.34 +0.4 447,777 - HMPREF1078_RS01785 0.34 +0.3 447,830 + HMPREF1078_RS01785 0.36 +0.1 447,848 + HMPREF1078_RS01785 0.37 -0.0 447,867 - HMPREF1078_RS01785 0.38 +1.4 447,893 + HMPREF1078_RS01785 0.39 -0.1 447,932 + HMPREF1078_RS01785 0.41 +0.3 447,934 + HMPREF1078_RS01785 0.41 -0.9 447,935 - HMPREF1078_RS01785 0.41 -0.9 448,065 + HMPREF1078_RS01785 0.47 +1.2 448,066 - HMPREF1078_RS01785 0.47 -0.4 448,066 - HMPREF1078_RS01785 0.47 +0.4 448,068 - HMPREF1078_RS01785 0.47 +0.9 448,088 + HMPREF1078_RS01785 0.48 +0.3 448,088 + HMPREF1078_RS01785 0.48 -0.1 448,089 - HMPREF1078_RS01785 0.48 +1.1 448,089 - HMPREF1078_RS01785 0.48 -1.4 448,160 + HMPREF1078_RS01785 0.51 -0.1 448,183 + HMPREF1078_RS01785 0.52 +0.6 448,184 - HMPREF1078_RS01785 0.52 +0.0 448,206 - HMPREF1078_RS01785 0.53 -0.3 448,305 + HMPREF1078_RS01785 0.58 -1.1 448,322 + HMPREF1078_RS01785 0.58 -0.3 448,323 - HMPREF1078_RS01785 0.58 -1.1 448,332 - HMPREF1078_RS01785 0.59 -0.5 448,334 + HMPREF1078_RS01785 0.59 -1.2 448,335 - HMPREF1078_RS01785 0.59 -0.9 448,335 - HMPREF1078_RS01785 0.59 +0.1 448,337 + HMPREF1078_RS01785 0.59 -0.2 448,338 - HMPREF1078_RS01785 0.59 -0.6 448,339 + HMPREF1078_RS01785 0.59 -0.1 448,352 - HMPREF1078_RS01785 0.60 -1.3 448,370 + HMPREF1078_RS01785 0.60 -0.6 448,388 + HMPREF1078_RS01785 0.61 -0.6 448,402 - HMPREF1078_RS01785 0.62 +0.2 448,410 + HMPREF1078_RS01785 0.62 -0.5 448,411 - HMPREF1078_RS01785 0.62 +1.7 448,589 + HMPREF1078_RS01785 0.70 +0.4 448,589 + HMPREF1078_RS01785 0.70 +0.2 448,589 + HMPREF1078_RS01785 0.70 +1.6 448,590 - HMPREF1078_RS01785 0.70 +1.2 448,637 + HMPREF1078_RS01785 0.73 -2.1 448,655 - HMPREF1078_RS01785 0.73 -0.2 448,769 + HMPREF1078_RS01785 0.78 +0.2 448,865 + HMPREF1078_RS01785 0.83 +0.1 448,865 + HMPREF1078_RS01785 0.83 -0.4 448,871 - HMPREF1078_RS01785 0.83 +0.8 448,877 - HMPREF1078_RS01785 0.83 -0.4 448,878 - HMPREF1078_RS01785 0.83 +0.9 448,996 + HMPREF1078_RS01785 0.89 +1.2 448,996 + HMPREF1078_RS01785 0.89 +0.4 448,996 + HMPREF1078_RS01785 0.89 +0.6 448,996 + HMPREF1078_RS01785 0.89 +0.9 449,067 + +0.4 449,068 - -0.9 449,068 - +0.8 449,068 - -0.1 449,068 - -0.8 449,071 + +0.8 449,072 - -0.9 449,088 + -0.1 449,088 + +0.0 449,089 - -0.4 449,223 + +1.0 449,224 - +1.1 449,247 - +0.2 449,255 - +1.7 449,293 + +1.0 449,294 - -0.5 449,452 + -1.2 449,453 - -0.8 449,453 - +0.4 449,457 + -0.6 449,458 - +0.3 449,458 - +2.1 449,550 + HMPREF1078_RS19690 0.24 +0.4 449,682 + HMPREF1078_RS19690 0.49 -0.8 449,682 + HMPREF1078_RS19690 0.49 -2.2 449,718 - HMPREF1078_RS19690 0.56 +0.3 449,786 + HMPREF1078_RS19690 0.68 +0.7 449,862 - HMPREF1078_RS19690 0.83 -2.2 449,874 + HMPREF1078_RS19690 0.85 -0.1 449,874 + HMPREF1078_RS19690 0.85 +0.2 449,875 - HMPREF1078_RS19690 0.85 +0.0 449,908 + +0.7 450,117 + HMPREF1078_RS19695 0.31 -0.1 450,176 - HMPREF1078_RS19695 0.40 -0.1
Or see this region's nucleotide sequence