Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00655 and HMPREF1078_RS00660 are separated by 106 nucleotides HMPREF1078_RS00660 and HMPREF1078_RS00665 are separated by 253 nucleotides HMPREF1078_RS00665 and HMPREF1078_RS00670 are separated by 0 nucleotides
HMPREF1078_RS00655: HMPREF1078_RS00655 - uracil phosphoribosyltransferase, at 154,035 to 154,688
_RS00655
HMPREF1078_RS00660: HMPREF1078_RS00660 - HU family DNA-binding protein, at 154,795 to 155,085
_RS00660
HMPREF1078_RS00665: HMPREF1078_RS00665 - UDP-N-acetylmuramate dehydrogenase, at 155,339 to 156,352
_RS00665
HMPREF1078_RS00670: HMPREF1078_RS00670 - MBL fold metallo-hydrolase, at 156,353 to 157,138
_RS00670
Position (kb) 155
156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 154.366 kb on + strand, within HMPREF1078_RS00655 at 154.366 kb on + strand, within HMPREF1078_RS00655 at 154.367 kb on - strand, within HMPREF1078_RS00655 at 154.458 kb on - strand, within HMPREF1078_RS00655 at 154.532 kb on - strand, within HMPREF1078_RS00655 at 154.544 kb on + strand, within HMPREF1078_RS00655 at 154.545 kb on - strand, within HMPREF1078_RS00655 at 154.555 kb on + strand, within HMPREF1078_RS00655 at 154.586 kb on + strand, within HMPREF1078_RS00655 at 154.601 kb on + strand, within HMPREF1078_RS00655 at 154.601 kb on + strand, within HMPREF1078_RS00655 at 154.676 kb on + strand at 154.727 kb on - strand at 154.787 kb on - strand at 154.818 kb on + strand at 154.819 kb on - strand at 154.835 kb on + strand, within HMPREF1078_RS00660 at 154.856 kb on - strand, within HMPREF1078_RS00660 at 154.910 kb on - strand, within HMPREF1078_RS00660 at 154.933 kb on + strand, within HMPREF1078_RS00660 at 154.933 kb on + strand, within HMPREF1078_RS00660 at 154.934 kb on - strand, within HMPREF1078_RS00660 at 154.981 kb on - strand, within HMPREF1078_RS00660 at 154.981 kb on - strand, within HMPREF1078_RS00660 at 154.981 kb on - strand, within HMPREF1078_RS00660 at 154.990 kb on + strand, within HMPREF1078_RS00660 at 154.999 kb on + strand, within HMPREF1078_RS00660 at 154.999 kb on + strand, within HMPREF1078_RS00660 at 154.999 kb on + strand, within HMPREF1078_RS00660 at 155.000 kb on - strand, within HMPREF1078_RS00660 at 155.000 kb on - strand, within HMPREF1078_RS00660 at 155.003 kb on + strand, within HMPREF1078_RS00660 at 155.004 kb on - strand, within HMPREF1078_RS00660 at 155.004 kb on - strand, within HMPREF1078_RS00660 at 155.004 kb on - strand, within HMPREF1078_RS00660 at 155.038 kb on + strand, within HMPREF1078_RS00660 at 155.139 kb on + strand at 155.139 kb on + strand at 155.140 kb on - strand at 155.146 kb on + strand at 155.147 kb on - strand at 155.185 kb on + strand at 155.186 kb on - strand at 155.199 kb on + strand at 155.199 kb on + strand at 155.200 kb on - strand at 155.200 kb on - strand at 155.200 kb on - strand at 155.200 kb on - strand at 155.200 kb on - strand at 155.257 kb on - strand at 155.300 kb on + strand at 155.331 kb on + strand at 155.331 kb on + strand at 156.345 kb on + strand at 156.345 kb on + strand at 156.345 kb on + strand at 156.345 kb on + strand at 156.345 kb on + strand at 156.361 kb on - strand at 156.402 kb on + strand at 156.403 kb on - strand at 156.425 kb on - strand at 156.425 kb on - strand at 156.457 kb on + strand, within HMPREF1078_RS00670 at 156.458 kb on - strand, within HMPREF1078_RS00670 at 156.458 kb on - strand, within HMPREF1078_RS00670 at 156.466 kb on - strand, within HMPREF1078_RS00670 at 156.545 kb on + strand, within HMPREF1078_RS00670 at 156.546 kb on - strand, within HMPREF1078_RS00670 at 156.546 kb on - strand, within HMPREF1078_RS00670 at 156.582 kb on - strand, within HMPREF1078_RS00670 at 156.609 kb on + strand, within HMPREF1078_RS00670 at 156.642 kb on + strand, within HMPREF1078_RS00670 at 156.642 kb on + strand, within HMPREF1078_RS00670 at 156.642 kb on + strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.682 kb on + strand, within HMPREF1078_RS00670 at 156.689 kb on + strand, within HMPREF1078_RS00670 at 156.689 kb on + strand, within HMPREF1078_RS00670 at 156.690 kb on - strand, within HMPREF1078_RS00670 at 156.707 kb on - strand, within HMPREF1078_RS00670 at 156.710 kb on + strand, within HMPREF1078_RS00670 at 156.838 kb on + strand, within HMPREF1078_RS00670 at 156.845 kb on + strand, within HMPREF1078_RS00670 at 156.858 kb on + strand, within HMPREF1078_RS00670 at 156.863 kb on + strand, within HMPREF1078_RS00670 at 156.881 kb on + strand, within HMPREF1078_RS00670 at 156.881 kb on + strand, within HMPREF1078_RS00670 at 156.882 kb on - strand, within HMPREF1078_RS00670 at 157.004 kb on + strand, within HMPREF1078_RS00670 at 157.125 kb on + strand at 157.132 kb on + strand at 157.133 kb on - strand at 157.133 kb on - strand at 157.139 kb on + strand at 157.283 kb on + strand at 157.348 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 154,366 + HMPREF1078_RS00655 0.51 -0.7 154,366 + HMPREF1078_RS00655 0.51 -0.4 154,367 - HMPREF1078_RS00655 0.51 -1.0 154,458 - HMPREF1078_RS00655 0.65 +0.8 154,532 - HMPREF1078_RS00655 0.76 +0.0 154,544 + HMPREF1078_RS00655 0.78 -1.4 154,545 - HMPREF1078_RS00655 0.78 +0.0 154,555 + HMPREF1078_RS00655 0.80 +0.1 154,586 + HMPREF1078_RS00655 0.84 +0.3 154,601 + HMPREF1078_RS00655 0.87 -0.3 154,601 + HMPREF1078_RS00655 0.87 -0.0 154,676 + -0.2 154,727 - +0.7 154,787 - -0.3 154,818 + +0.1 154,819 - -0.5 154,835 + HMPREF1078_RS00660 0.14 -0.3 154,856 - HMPREF1078_RS00660 0.21 +0.1 154,910 - HMPREF1078_RS00660 0.40 -0.1 154,933 + HMPREF1078_RS00660 0.47 -0.2 154,933 + HMPREF1078_RS00660 0.47 -0.3 154,934 - HMPREF1078_RS00660 0.48 -0.8 154,981 - HMPREF1078_RS00660 0.64 +0.8 154,981 - HMPREF1078_RS00660 0.64 -0.9 154,981 - HMPREF1078_RS00660 0.64 +1.9 154,990 + HMPREF1078_RS00660 0.67 -0.6 154,999 + HMPREF1078_RS00660 0.70 +1.0 154,999 + HMPREF1078_RS00660 0.70 -0.8 154,999 + HMPREF1078_RS00660 0.70 -1.0 155,000 - HMPREF1078_RS00660 0.70 -0.9 155,000 - HMPREF1078_RS00660 0.70 -0.3 155,003 + HMPREF1078_RS00660 0.71 -0.1 155,004 - HMPREF1078_RS00660 0.72 -1.4 155,004 - HMPREF1078_RS00660 0.72 -0.1 155,004 - HMPREF1078_RS00660 0.72 -0.5 155,038 + HMPREF1078_RS00660 0.84 -0.3 155,139 + -0.7 155,139 + -0.3 155,140 - +0.6 155,146 + +0.3 155,147 - -1.7 155,185 + -0.7 155,186 - +0.3 155,199 + +0.1 155,199 + +0.9 155,200 - +0.9 155,200 - -1.0 155,200 - +0.4 155,200 - -1.9 155,200 - -1.1 155,257 - -0.3 155,300 + -1.3 155,331 + +0.8 155,331 + -0.1 156,345 + +0.5 156,345 + -0.6 156,345 + +0.5 156,345 + +1.3 156,345 + +0.1 156,361 - +0.1 156,402 + -1.9 156,403 - -1.6 156,425 - +0.5 156,425 - -0.0 156,457 + HMPREF1078_RS00670 0.13 -0.9 156,458 - HMPREF1078_RS00670 0.13 -2.8 156,458 - HMPREF1078_RS00670 0.13 +0.4 156,466 - HMPREF1078_RS00670 0.14 -1.0 156,545 + HMPREF1078_RS00670 0.24 -0.4 156,546 - HMPREF1078_RS00670 0.25 +1.9 156,546 - HMPREF1078_RS00670 0.25 -0.2 156,582 - HMPREF1078_RS00670 0.29 -0.4 156,609 + HMPREF1078_RS00670 0.33 +0.2 156,642 + HMPREF1078_RS00670 0.37 -0.3 156,642 + HMPREF1078_RS00670 0.37 +1.1 156,642 + HMPREF1078_RS00670 0.37 -0.7 156,643 - HMPREF1078_RS00670 0.37 -1.6 156,643 - HMPREF1078_RS00670 0.37 -0.4 156,643 - HMPREF1078_RS00670 0.37 -0.8 156,643 - HMPREF1078_RS00670 0.37 -1.4 156,643 - HMPREF1078_RS00670 0.37 -0.0 156,682 + HMPREF1078_RS00670 0.42 -1.3 156,689 + HMPREF1078_RS00670 0.43 -0.0 156,689 + HMPREF1078_RS00670 0.43 +0.6 156,690 - HMPREF1078_RS00670 0.43 -0.7 156,707 - HMPREF1078_RS00670 0.45 +0.9 156,710 + HMPREF1078_RS00670 0.45 -1.5 156,838 + HMPREF1078_RS00670 0.62 +1.6 156,845 + HMPREF1078_RS00670 0.63 -1.6 156,858 + HMPREF1078_RS00670 0.64 -0.7 156,863 + HMPREF1078_RS00670 0.65 -1.0 156,881 + HMPREF1078_RS00670 0.67 -2.1 156,881 + HMPREF1078_RS00670 0.67 -1.2 156,882 - HMPREF1078_RS00670 0.67 +0.1 157,004 + HMPREF1078_RS00670 0.83 -0.7 157,125 + -0.4 157,132 + +0.6 157,133 - +0.9 157,133 - +0.1 157,139 + -0.7 157,283 + +0.9 157,348 + -0.7
Or see this region's nucleotide sequence