Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS19145 and HMPREF1078_RS19150 are separated by 18 nucleotides HMPREF1078_RS19150 and HMPREF1078_RS07120 are separated by 35 nucleotides
HMPREF1078_RS19145: HMPREF1078_RS19145 - MFS transporter, at 840,792 to 841,991
_RS19145
HMPREF1078_RS19150: HMPREF1078_RS19150 - 4-phosphoerythronate dehydrogenase PdxB, at 842,010 to 843,122
_RS19150
HMPREF1078_RS07120: HMPREF1078_RS07120 - hypothetical protein, at 843,158 to 844,012
_RS07120
Position (kb) 842
843
844 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 841.081 kb on + strand, within HMPREF1078_RS19145 at 841.081 kb on + strand, within HMPREF1078_RS19145 at 841.081 kb on + strand, within HMPREF1078_RS19145 at 841.082 kb on - strand, within HMPREF1078_RS19145 at 841.082 kb on - strand, within HMPREF1078_RS19145 at 841.082 kb on - strand, within HMPREF1078_RS19145 at 841.084 kb on - strand, within HMPREF1078_RS19145 at 841.163 kb on - strand, within HMPREF1078_RS19145 at 841.163 kb on - strand, within HMPREF1078_RS19145 at 841.163 kb on - strand, within HMPREF1078_RS19145 at 841.262 kb on - strand, within HMPREF1078_RS19145 at 841.301 kb on - strand, within HMPREF1078_RS19145 at 841.301 kb on - strand, within HMPREF1078_RS19145 at 841.312 kb on + strand, within HMPREF1078_RS19145 at 841.312 kb on + strand, within HMPREF1078_RS19145 at 841.312 kb on + strand, within HMPREF1078_RS19145 at 841.312 kb on + strand, within HMPREF1078_RS19145 at 841.313 kb on - strand, within HMPREF1078_RS19145 at 841.313 kb on - strand, within HMPREF1078_RS19145 at 841.313 kb on - strand, within HMPREF1078_RS19145 at 841.448 kb on - strand, within HMPREF1078_RS19145 at 841.448 kb on - strand, within HMPREF1078_RS19145 at 841.504 kb on + strand, within HMPREF1078_RS19145 at 841.690 kb on + strand, within HMPREF1078_RS19145 at 841.716 kb on - strand, within HMPREF1078_RS19145 at 841.717 kb on + strand, within HMPREF1078_RS19145 at 841.747 kb on + strand, within HMPREF1078_RS19145 at 841.811 kb on + strand, within HMPREF1078_RS19145 at 841.826 kb on + strand, within HMPREF1078_RS19145 at 841.827 kb on - strand, within HMPREF1078_RS19145 at 841.829 kb on + strand, within HMPREF1078_RS19145 at 841.831 kb on + strand, within HMPREF1078_RS19145 at 841.832 kb on - strand, within HMPREF1078_RS19145 at 841.832 kb on - strand, within HMPREF1078_RS19145 at 841.915 kb on + strand at 841.947 kb on + strand at 841.953 kb on - strand at 841.971 kb on + strand at 841.973 kb on + strand at 841.973 kb on + strand at 841.973 kb on + strand at 841.973 kb on + strand at 842.080 kb on + strand at 842.089 kb on + strand at 842.161 kb on - strand, within HMPREF1078_RS19150 at 842.318 kb on + strand, within HMPREF1078_RS19150 at 842.319 kb on - strand, within HMPREF1078_RS19150 at 842.319 kb on - strand, within HMPREF1078_RS19150 at 842.830 kb on + strand, within HMPREF1078_RS19150 at 842.879 kb on + strand, within HMPREF1078_RS19150 at 842.888 kb on + strand, within HMPREF1078_RS19150 at 842.888 kb on + strand, within HMPREF1078_RS19150 at 842.909 kb on + strand, within HMPREF1078_RS19150 at 842.982 kb on - strand, within HMPREF1078_RS19150 at 842.988 kb on - strand, within HMPREF1078_RS19150 at 842.988 kb on - strand, within HMPREF1078_RS19150 at 843.003 kb on + strand, within HMPREF1078_RS19150 at 843.058 kb on - strand at 843.197 kb on + strand at 843.197 kb on + strand at 843.198 kb on - strand at 843.414 kb on + strand, within HMPREF1078_RS07120 at 843.434 kb on + strand, within HMPREF1078_RS07120 at 843.435 kb on - strand, within HMPREF1078_RS07120 at 843.525 kb on - strand, within HMPREF1078_RS07120 at 843.601 kb on + strand, within HMPREF1078_RS07120 at 843.601 kb on + strand, within HMPREF1078_RS07120 at 843.602 kb on - strand, within HMPREF1078_RS07120 at 843.603 kb on + strand, within HMPREF1078_RS07120 at 843.628 kb on - strand, within HMPREF1078_RS07120 at 843.726 kb on + strand, within HMPREF1078_RS07120 at 843.757 kb on - strand, within HMPREF1078_RS07120 at 843.852 kb on + strand, within HMPREF1078_RS07120 at 843.867 kb on + strand, within HMPREF1078_RS07120 at 843.903 kb on + strand, within HMPREF1078_RS07120 at 843.920 kb on - strand, within HMPREF1078_RS07120 at 843.921 kb on + strand, within HMPREF1078_RS07120 at 843.961 kb on - strand at 843.995 kb on + strand at 844.013 kb on - strand at 844.018 kb on + strand at 844.019 kb on - strand at 844.019 kb on - strand at 844.029 kb on + strand at 844.030 kb on - strand at 844.070 kb on - strand at 844.070 kb on - strand at 844.070 kb on - strand at 844.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 841,081 + HMPREF1078_RS19145 0.24 -0.9 841,081 + HMPREF1078_RS19145 0.24 +0.9 841,081 + HMPREF1078_RS19145 0.24 -0.4 841,082 - HMPREF1078_RS19145 0.24 +0.2 841,082 - HMPREF1078_RS19145 0.24 -0.0 841,082 - HMPREF1078_RS19145 0.24 -2.0 841,084 - HMPREF1078_RS19145 0.24 -0.9 841,163 - HMPREF1078_RS19145 0.31 -0.5 841,163 - HMPREF1078_RS19145 0.31 +0.1 841,163 - HMPREF1078_RS19145 0.31 -1.2 841,262 - HMPREF1078_RS19145 0.39 -0.9 841,301 - HMPREF1078_RS19145 0.42 -1.0 841,301 - HMPREF1078_RS19145 0.42 -3.4 841,312 + HMPREF1078_RS19145 0.43 -0.9 841,312 + HMPREF1078_RS19145 0.43 +1.0 841,312 + HMPREF1078_RS19145 0.43 +0.7 841,312 + HMPREF1078_RS19145 0.43 -1.2 841,313 - HMPREF1078_RS19145 0.43 -0.2 841,313 - HMPREF1078_RS19145 0.43 +0.8 841,313 - HMPREF1078_RS19145 0.43 +1.2 841,448 - HMPREF1078_RS19145 0.55 +0.0 841,448 - HMPREF1078_RS19145 0.55 -0.3 841,504 + HMPREF1078_RS19145 0.59 -0.3 841,690 + HMPREF1078_RS19145 0.75 +0.7 841,716 - HMPREF1078_RS19145 0.77 -0.4 841,717 + HMPREF1078_RS19145 0.77 -2.1 841,747 + HMPREF1078_RS19145 0.80 +0.4 841,811 + HMPREF1078_RS19145 0.85 +1.1 841,826 + HMPREF1078_RS19145 0.86 -1.3 841,827 - HMPREF1078_RS19145 0.86 +0.1 841,829 + HMPREF1078_RS19145 0.86 -0.2 841,831 + HMPREF1078_RS19145 0.87 +0.3 841,832 - HMPREF1078_RS19145 0.87 +0.2 841,832 - HMPREF1078_RS19145 0.87 +0.5 841,915 + -0.4 841,947 + -0.5 841,953 - -0.4 841,971 + +0.6 841,973 + -0.5 841,973 + -1.3 841,973 + -0.1 841,973 + -2.1 842,080 + -1.7 842,089 + -1.1 842,161 - HMPREF1078_RS19150 0.14 -1.3 842,318 + HMPREF1078_RS19150 0.28 -1.4 842,319 - HMPREF1078_RS19150 0.28 -0.5 842,319 - HMPREF1078_RS19150 0.28 -0.7 842,830 + HMPREF1078_RS19150 0.74 -4.0 842,879 + HMPREF1078_RS19150 0.78 -3.5 842,888 + HMPREF1078_RS19150 0.79 -3.2 842,888 + HMPREF1078_RS19150 0.79 -2.5 842,909 + HMPREF1078_RS19150 0.81 -2.1 842,982 - HMPREF1078_RS19150 0.87 -4.2 842,988 - HMPREF1078_RS19150 0.88 -3.6 842,988 - HMPREF1078_RS19150 0.88 -3.5 843,003 + HMPREF1078_RS19150 0.89 -3.1 843,058 - -1.6 843,197 + +0.0 843,197 + +0.7 843,198 - -0.2 843,414 + HMPREF1078_RS07120 0.30 +0.5 843,434 + HMPREF1078_RS07120 0.32 +0.5 843,435 - HMPREF1078_RS07120 0.32 -0.5 843,525 - HMPREF1078_RS07120 0.43 -1.2 843,601 + HMPREF1078_RS07120 0.52 +0.0 843,601 + HMPREF1078_RS07120 0.52 -1.4 843,602 - HMPREF1078_RS07120 0.52 +0.8 843,603 + HMPREF1078_RS07120 0.52 +0.2 843,628 - HMPREF1078_RS07120 0.55 -0.4 843,726 + HMPREF1078_RS07120 0.66 -0.9 843,757 - HMPREF1078_RS07120 0.70 +0.1 843,852 + HMPREF1078_RS07120 0.81 -0.5 843,867 + HMPREF1078_RS07120 0.83 -0.0 843,903 + HMPREF1078_RS07120 0.87 +0.4 843,920 - HMPREF1078_RS07120 0.89 -0.4 843,921 + HMPREF1078_RS07120 0.89 +1.2 843,961 - -1.7 843,995 + -1.1 844,013 - +0.6 844,018 + -0.6 844,019 - +0.5 844,019 - -0.1 844,029 + -0.1 844,030 - +0.3 844,070 - -0.3 844,070 - +0.9 844,070 - -0.9 844,070 - -0.9
Or see this region's nucleotide sequence