Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS17540

Experiment: D-Mannose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose 10 mg/mL (C)
59,668	+		HMPREF1078_RS17535	0.37	+1.1
59,668	+		HMPREF1078_RS17535	0.37	+0.2
59,669	-		HMPREF1078_RS17535	0.37	-0.3
59,701	+		HMPREF1078_RS17535	0.40	+0.7
59,854	+		HMPREF1078_RS17535	0.52	+0.8
59,882	-		HMPREF1078_RS17535	0.54	+0.3
59,966	-		HMPREF1078_RS17535	0.61	-0.6
60,006	+		HMPREF1078_RS17535	0.64	-1.1
60,066	+		HMPREF1078_RS17535	0.68	-1.2
60,066	+		HMPREF1078_RS17535	0.68	-1.2
60,067	-		HMPREF1078_RS17535	0.68	-0.6
60,067	-		HMPREF1078_RS17535	0.68	-0.2
60,390	-				+0.1
60,399	-				-1.6
60,540	-				-1.0
60,540	-				-2.0
60,545	+				-1.0
60,545	+				+1.4
60,545	+				+0.9
60,549	+				-0.0
60,552	+				-0.3
60,560	+				-1.4
60,560	+				-3.7
60,561	-				+1.4
60,582	-				+0.0
60,592	+				-3.2
60,592	+				-4.5
60,592	+				-1.3
60,592	+				-3.4
60,593	-				-1.7
60,593	-				-1.2
60,593	-				+0.0
60,593	-				-0.6
60,593	-				-0.8
60,593	-				+0.4
60,594	+				-4.7
60,663	+		HMPREF1078_RS17540	0.14	-3.3
60,663	+		HMPREF1078_RS17540	0.14	-1.1
60,664	-		HMPREF1078_RS17540	0.15	+0.0
60,704	+		HMPREF1078_RS17540	0.20	-2.7
60,715	+		HMPREF1078_RS17540	0.21	-4.7
60,763	+		HMPREF1078_RS17540	0.28	-5.1
60,763	+		HMPREF1078_RS17540	0.28	-4.0
60,763	+		HMPREF1078_RS17540	0.28	-3.0
60,763	+		HMPREF1078_RS17540	0.28	-3.1
60,763	+		HMPREF1078_RS17540	0.28	-4.2
60,764	-		HMPREF1078_RS17540	0.28	-1.0
60,764	-		HMPREF1078_RS17540	0.28	-1.0
60,764	-		HMPREF1078_RS17540	0.28	-0.6
60,764	-		HMPREF1078_RS17540	0.28	-2.0
60,764	-		HMPREF1078_RS17540	0.28	-1.6
60,764	-		HMPREF1078_RS17540	0.28	-1.0
60,764	-		HMPREF1078_RS17540	0.28	-1.9
60,918	+		HMPREF1078_RS17540	0.48	-2.5
61,057	+		HMPREF1078_RS17540	0.66	-3.6
61,058	-		HMPREF1078_RS17540	0.66	-0.5
61,099	-		HMPREF1078_RS17540	0.72	+0.8
61,131	+		HMPREF1078_RS17540	0.76	-5.7
61,210	+		HMPREF1078_RS17540	0.86	-3.0
61,211	-		HMPREF1078_RS17540	0.86	-0.2
61,211	-		HMPREF1078_RS17540	0.86	-0.8
61,211	-		HMPREF1078_RS17540	0.86	-0.5
61,228	+		HMPREF1078_RS17540	0.89	-3.0
61,231	+		HMPREF1078_RS17540	0.89	-3.1
61,231	+		HMPREF1078_RS17540	0.89	-2.6
61,338	+				-2.6
61,338	+				-1.8
61,338	+				-3.5
61,338	+				-3.6
61,338	+				-1.7
61,338	+				-3.3
61,338	+				-3.7
61,340	+				+0.5
61,340	+				-3.8
62,302	-		HMPREF1078_RS17545	0.38	+2.4