Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17435 and HMPREF1078_RS17440 are separated by 386 nucleotides HMPREF1078_RS17440 and HMPREF1078_RS17445 are separated by 16 nucleotides
HMPREF1078_RS17435: HMPREF1078_RS17435 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 41,207 to 42,520
_RS17435
HMPREF1078_RS17440: HMPREF1078_RS17440 - hypothetical protein, at 42,907 to 43,134
_RS17440
HMPREF1078_RS17445: HMPREF1078_RS17445 - lipopolysaccharide biosynthesis protein, at 43,151 to 44,596
_RS17445
Position (kb) 42
43
44 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 41.923 kb on + strand, within HMPREF1078_RS17435 at 41.924 kb on - strand, within HMPREF1078_RS17435 at 41.924 kb on - strand, within HMPREF1078_RS17435 at 41.975 kb on + strand, within HMPREF1078_RS17435 at 41.976 kb on - strand, within HMPREF1078_RS17435 at 42.016 kb on + strand, within HMPREF1078_RS17435 at 42.017 kb on - strand, within HMPREF1078_RS17435 at 42.018 kb on + strand, within HMPREF1078_RS17435 at 42.018 kb on + strand, within HMPREF1078_RS17435 at 42.070 kb on - strand, within HMPREF1078_RS17435 at 42.154 kb on + strand, within HMPREF1078_RS17435 at 42.154 kb on + strand, within HMPREF1078_RS17435 at 42.155 kb on - strand, within HMPREF1078_RS17435 at 42.160 kb on + strand, within HMPREF1078_RS17435 at 42.161 kb on - strand, within HMPREF1078_RS17435 at 42.161 kb on - strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.167 kb on - strand, within HMPREF1078_RS17435 at 42.167 kb on - strand, within HMPREF1078_RS17435 at 42.203 kb on - strand, within HMPREF1078_RS17435 at 42.203 kb on - strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.264 kb on - strand, within HMPREF1078_RS17435 at 42.264 kb on - strand, within HMPREF1078_RS17435 at 42.264 kb on - strand, within HMPREF1078_RS17435 at 42.289 kb on - strand, within HMPREF1078_RS17435 at 42.324 kb on - strand, within HMPREF1078_RS17435 at 42.338 kb on + strand, within HMPREF1078_RS17435 at 42.338 kb on + strand, within HMPREF1078_RS17435 at 42.338 kb on + strand, within HMPREF1078_RS17435 at 42.339 kb on - strand, within HMPREF1078_RS17435 at 42.339 kb on - strand, within HMPREF1078_RS17435 at 42.339 kb on - strand, within HMPREF1078_RS17435 at 42.349 kb on - strand, within HMPREF1078_RS17435 at 42.464 kb on + strand at 42.465 kb on - strand at 42.465 kb on - strand at 42.511 kb on - strand at 42.518 kb on + strand at 42.518 kb on + strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.522 kb on + strand at 42.522 kb on + strand at 42.522 kb on + strand at 42.523 kb on - strand at 42.555 kb on + strand at 42.558 kb on + strand at 42.558 kb on + strand at 42.569 kb on + strand at 42.601 kb on + strand at 42.601 kb on + strand at 42.602 kb on - strand at 42.602 kb on - strand at 42.602 kb on - strand at 42.603 kb on + strand at 42.604 kb on - strand at 42.632 kb on + strand at 42.636 kb on + strand at 42.636 kb on + strand at 42.637 kb on - strand at 42.637 kb on - strand at 42.663 kb on + strand at 42.663 kb on + strand at 42.663 kb on + strand at 42.664 kb on - strand at 42.678 kb on + strand at 42.678 kb on + strand at 42.689 kb on + strand at 42.689 kb on + strand at 42.692 kb on + strand at 42.692 kb on + strand at 42.692 kb on + strand at 42.707 kb on + strand at 42.707 kb on + strand at 42.707 kb on + strand at 42.732 kb on + strand at 42.732 kb on + strand at 42.732 kb on + strand at 42.733 kb on - strand at 42.733 kb on - strand at 42.734 kb on + strand at 42.735 kb on - strand at 42.735 kb on - strand at 42.735 kb on - strand at 42.735 kb on - strand at 42.754 kb on - strand at 42.764 kb on - strand at 42.764 kb on - strand at 42.822 kb on + strand at 42.823 kb on - strand at 42.825 kb on + strand at 42.826 kb on - strand at 42.826 kb on - strand at 42.829 kb on + strand at 42.829 kb on + strand at 42.829 kb on + strand at 42.830 kb on - strand at 42.830 kb on - strand at 42.854 kb on - strand at 42.898 kb on + strand at 42.898 kb on + strand at 42.898 kb on + strand at 42.923 kb on + strand at 42.927 kb on - strand at 42.930 kb on + strand, within HMPREF1078_RS17440 at 42.930 kb on + strand, within HMPREF1078_RS17440 at 42.930 kb on + strand, within HMPREF1078_RS17440 at 42.930 kb on + strand, within HMPREF1078_RS17440 at 42.931 kb on - strand, within HMPREF1078_RS17440 at 42.931 kb on - strand, within HMPREF1078_RS17440 at 42.931 kb on - strand, within HMPREF1078_RS17440 at 42.931 kb on - strand, within HMPREF1078_RS17440 at 42.956 kb on + strand, within HMPREF1078_RS17440 at 42.956 kb on + strand, within HMPREF1078_RS17440 at 42.983 kb on - strand, within HMPREF1078_RS17440 at 42.996 kb on + strand, within HMPREF1078_RS17440 at 43.000 kb on + strand, within HMPREF1078_RS17440 at 43.007 kb on + strand, within HMPREF1078_RS17440 at 43.007 kb on + strand, within HMPREF1078_RS17440 at 43.008 kb on - strand, within HMPREF1078_RS17440 at 43.008 kb on - strand, within HMPREF1078_RS17440 at 43.063 kb on + strand, within HMPREF1078_RS17440 at 43.110 kb on + strand, within HMPREF1078_RS17440 at 43.110 kb on + strand, within HMPREF1078_RS17440 at 43.111 kb on - strand, within HMPREF1078_RS17440 at 43.111 kb on - strand, within HMPREF1078_RS17440 at 43.120 kb on - strand at 43.120 kb on - strand at 43.148 kb on + strand at 43.476 kb on - strand, within HMPREF1078_RS17445 at 43.695 kb on - strand, within HMPREF1078_RS17445
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 41,923 + HMPREF1078_RS17435 0.54 -1.9 41,924 - HMPREF1078_RS17435 0.55 -3.3 41,924 - HMPREF1078_RS17435 0.55 -0.4 41,975 + HMPREF1078_RS17435 0.58 -0.3 41,976 - HMPREF1078_RS17435 0.59 -1.7 42,016 + HMPREF1078_RS17435 0.62 -1.9 42,017 - HMPREF1078_RS17435 0.62 -1.6 42,018 + HMPREF1078_RS17435 0.62 -1.6 42,018 + HMPREF1078_RS17435 0.62 +0.6 42,070 - HMPREF1078_RS17435 0.66 -1.9 42,154 + HMPREF1078_RS17435 0.72 +0.0 42,154 + HMPREF1078_RS17435 0.72 +1.5 42,155 - HMPREF1078_RS17435 0.72 -3.8 42,160 + HMPREF1078_RS17435 0.73 -1.7 42,161 - HMPREF1078_RS17435 0.73 -3.0 42,161 - HMPREF1078_RS17435 0.73 -1.8 42,166 + HMPREF1078_RS17435 0.73 -1.0 42,166 + HMPREF1078_RS17435 0.73 -1.9 42,166 + HMPREF1078_RS17435 0.73 +0.5 42,166 + HMPREF1078_RS17435 0.73 -1.2 42,166 + HMPREF1078_RS17435 0.73 +1.1 42,167 - HMPREF1078_RS17435 0.73 -2.4 42,167 - HMPREF1078_RS17435 0.73 -2.2 42,203 - HMPREF1078_RS17435 0.76 -3.4 42,203 - HMPREF1078_RS17435 0.76 -3.0 42,263 + HMPREF1078_RS17435 0.80 -0.3 42,263 + HMPREF1078_RS17435 0.80 -0.7 42,263 + HMPREF1078_RS17435 0.80 -0.0 42,263 + HMPREF1078_RS17435 0.80 +0.1 42,263 + HMPREF1078_RS17435 0.80 -1.6 42,263 + HMPREF1078_RS17435 0.80 -0.5 42,264 - HMPREF1078_RS17435 0.80 -3.0 42,264 - HMPREF1078_RS17435 0.80 -3.9 42,264 - HMPREF1078_RS17435 0.80 -1.2 42,289 - HMPREF1078_RS17435 0.82 -1.2 42,324 - HMPREF1078_RS17435 0.85 -1.1 42,338 + HMPREF1078_RS17435 0.86 -0.4 42,338 + HMPREF1078_RS17435 0.86 -0.3 42,338 + HMPREF1078_RS17435 0.86 -1.1 42,339 - HMPREF1078_RS17435 0.86 -1.0 42,339 - HMPREF1078_RS17435 0.86 +0.0 42,339 - HMPREF1078_RS17435 0.86 -2.3 42,349 - HMPREF1078_RS17435 0.87 -2.7 42,464 + -0.5 42,465 - -2.0 42,465 - -0.7 42,511 - -1.1 42,518 + +1.6 42,518 + -0.8 42,519 - -2.0 42,519 - +0.3 42,519 - -3.5 42,519 - -2.5 42,519 - -3.1 42,519 - -0.2 42,519 - -1.9 42,519 - -0.2 42,519 - -0.5 42,522 + -0.2 42,522 + -1.1 42,522 + -0.6 42,523 - -2.2 42,555 + +0.1 42,558 + +0.3 42,558 + +0.3 42,569 + +0.0 42,601 + -0.4 42,601 + -1.1 42,602 - -3.5 42,602 - -0.8 42,602 - -1.0 42,603 + -2.5 42,604 - -2.4 42,632 + +0.0 42,636 + +0.3 42,636 + +0.0 42,637 - -1.6 42,637 - -0.8 42,663 + -0.4 42,663 + -0.2 42,663 + -1.1 42,664 - -0.8 42,678 + +0.4 42,678 + +0.0 42,689 + -1.0 42,689 + -1.4 42,692 + +0.2 42,692 + -0.2 42,692 + -0.4 42,707 + -0.7 42,707 + -1.9 42,707 + -0.6 42,732 + -0.1 42,732 + +0.2 42,732 + +0.7 42,733 - -2.6 42,733 - -2.8 42,734 + +0.4 42,735 - -1.8 42,735 - -1.0 42,735 - -2.7 42,735 - -2.6 42,754 - -1.0 42,764 - -2.0 42,764 - -2.1 42,822 + +0.7 42,823 - -2.3 42,825 + +0.5 42,826 - -2.6 42,826 - +0.0 42,829 + +1.2 42,829 + -0.5 42,829 + -1.9 42,830 - -1.7 42,830 - -0.8 42,854 - -1.4 42,898 + +0.2 42,898 + -2.9 42,898 + -0.1 42,923 + -0.2 42,927 - -1.8 42,930 + HMPREF1078_RS17440 0.10 +0.3 42,930 + HMPREF1078_RS17440 0.10 -1.4 42,930 + HMPREF1078_RS17440 0.10 -0.3 42,930 + HMPREF1078_RS17440 0.10 -0.5 42,931 - HMPREF1078_RS17440 0.11 -1.8 42,931 - HMPREF1078_RS17440 0.11 -1.1 42,931 - HMPREF1078_RS17440 0.11 -0.7 42,931 - HMPREF1078_RS17440 0.11 -0.7 42,956 + HMPREF1078_RS17440 0.21 -0.6 42,956 + HMPREF1078_RS17440 0.21 +1.0 42,983 - HMPREF1078_RS17440 0.33 -0.7 42,996 + HMPREF1078_RS17440 0.39 +1.1 43,000 + HMPREF1078_RS17440 0.41 +0.2 43,007 + HMPREF1078_RS17440 0.44 -0.2 43,007 + HMPREF1078_RS17440 0.44 +0.5 43,008 - HMPREF1078_RS17440 0.44 +0.3 43,008 - HMPREF1078_RS17440 0.44 -1.0 43,063 + HMPREF1078_RS17440 0.68 +0.9 43,110 + HMPREF1078_RS17440 0.89 -2.2 43,110 + HMPREF1078_RS17440 0.89 -2.7 43,111 - HMPREF1078_RS17440 0.89 -0.8 43,111 - HMPREF1078_RS17440 0.89 -0.5 43,120 - -2.7 43,120 - -1.7 43,148 + -0.8 43,476 - HMPREF1078_RS17445 0.22 +0.3 43,695 - HMPREF1078_RS17445 0.38 -0.7
Or see this region's nucleotide sequence