Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17070 and HMPREF1078_RS17075 are separated by 184 nucleotides HMPREF1078_RS17075 and HMPREF1078_RS17080 are separated by 3 nucleotides HMPREF1078_RS17080 and HMPREF1078_RS17085 are separated by 67 nucleotides
HMPREF1078_RS17070: HMPREF1078_RS17070 - LPS export ABC transporter ATP-binding protein, at 123,426 to 124,178
_RS17070
HMPREF1078_RS17075: HMPREF1078_RS17075 - ABC transporter permease, at 124,363 to 125,109
_RS17075
HMPREF1078_RS17080: HMPREF1078_RS17080 - ATP-binding cassette domain-containing protein, at 125,113 to 125,901
_RS17080
HMPREF1078_RS17085: HMPREF1078_RS17085 - insulinase family protein, at 125,969 to 128,881
_RS17085
Position (kb) 125
126 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 124.221 kb on - strand at 124.221 kb on - strand at 124.223 kb on - strand at 124.252 kb on + strand at 124.264 kb on + strand at 124.264 kb on + strand at 124.357 kb on - strand at 124.369 kb on - strand at 124.376 kb on + strand at 124.376 kb on + strand at 124.376 kb on + strand at 124.377 kb on - strand at 124.385 kb on + strand at 124.393 kb on + strand at 124.393 kb on + strand at 124.394 kb on - strand at 124.394 kb on - strand at 124.394 kb on - strand at 124.469 kb on + strand, within HMPREF1078_RS17075 at 124.470 kb on - strand, within HMPREF1078_RS17075 at 124.478 kb on + strand, within HMPREF1078_RS17075 at 124.479 kb on - strand, within HMPREF1078_RS17075 at 124.556 kb on - strand, within HMPREF1078_RS17075 at 124.557 kb on + strand, within HMPREF1078_RS17075 at 124.589 kb on + strand, within HMPREF1078_RS17075 at 124.596 kb on + strand, within HMPREF1078_RS17075 at 124.597 kb on - strand, within HMPREF1078_RS17075 at 124.597 kb on - strand, within HMPREF1078_RS17075 at 124.806 kb on + strand, within HMPREF1078_RS17075 at 124.806 kb on + strand, within HMPREF1078_RS17075 at 124.815 kb on + strand, within HMPREF1078_RS17075 at 124.816 kb on - strand, within HMPREF1078_RS17075 at 124.816 kb on - strand, within HMPREF1078_RS17075 at 124.869 kb on + strand, within HMPREF1078_RS17075 at 124.869 kb on + strand, within HMPREF1078_RS17075 at 124.870 kb on - strand, within HMPREF1078_RS17075 at 124.906 kb on + strand, within HMPREF1078_RS17075 at 124.907 kb on - strand, within HMPREF1078_RS17075 at 124.930 kb on + strand, within HMPREF1078_RS17075 at 124.930 kb on + strand, within HMPREF1078_RS17075 at 124.941 kb on + strand, within HMPREF1078_RS17075 at 124.941 kb on + strand, within HMPREF1078_RS17075 at 124.954 kb on + strand, within HMPREF1078_RS17075 at 124.955 kb on - strand, within HMPREF1078_RS17075 at 124.966 kb on - strand, within HMPREF1078_RS17075 at 124.995 kb on + strand, within HMPREF1078_RS17075 at 124.996 kb on - strand, within HMPREF1078_RS17075 at 124.996 kb on - strand, within HMPREF1078_RS17075 at 125.088 kb on - strand at 125.097 kb on - strand at 125.107 kb on + strand at 125.130 kb on + strand at 125.130 kb on + strand at 125.130 kb on + strand at 125.130 kb on + strand at 125.291 kb on - strand, within HMPREF1078_RS17080 at 125.320 kb on - strand, within HMPREF1078_RS17080 at 125.356 kb on - strand, within HMPREF1078_RS17080 at 125.424 kb on + strand, within HMPREF1078_RS17080 at 125.424 kb on + strand, within HMPREF1078_RS17080 at 125.425 kb on - strand, within HMPREF1078_RS17080 at 125.425 kb on - strand, within HMPREF1078_RS17080 at 125.425 kb on - strand, within HMPREF1078_RS17080 at 125.443 kb on + strand, within HMPREF1078_RS17080 at 125.443 kb on + strand, within HMPREF1078_RS17080 at 125.443 kb on + strand, within HMPREF1078_RS17080 at 125.443 kb on + strand, within HMPREF1078_RS17080 at 125.535 kb on + strand, within HMPREF1078_RS17080 at 125.585 kb on - strand, within HMPREF1078_RS17080 at 125.637 kb on + strand, within HMPREF1078_RS17080 at 125.658 kb on + strand, within HMPREF1078_RS17080 at 125.671 kb on + strand, within HMPREF1078_RS17080 at 125.685 kb on + strand, within HMPREF1078_RS17080 at 125.685 kb on + strand, within HMPREF1078_RS17080 at 125.685 kb on + strand, within HMPREF1078_RS17080 at 125.686 kb on - strand, within HMPREF1078_RS17080 at 125.686 kb on - strand, within HMPREF1078_RS17080 at 125.790 kb on + strand, within HMPREF1078_RS17080 at 125.791 kb on - strand, within HMPREF1078_RS17080 at 125.873 kb on + strand at 125.908 kb on - strand at 125.958 kb on + strand at 125.970 kb on + strand at 126.015 kb on + strand at 126.015 kb on + strand at 126.015 kb on + strand at 126.016 kb on - strand at 126.016 kb on - strand at 126.056 kb on + strand at 126.057 kb on - strand at 126.059 kb on + strand at 126.066 kb on + strand at 126.066 kb on + strand at 126.066 kb on + strand at 126.066 kb on + strand at 126.066 kb on + strand at 126.066 kb on + strand at 126.067 kb on - strand at 126.067 kb on - strand at 126.067 kb on - strand at 126.070 kb on + strand at 126.070 kb on + strand at 126.070 kb on + strand at 126.071 kb on - strand at 126.071 kb on - strand at 126.071 kb on - strand at 126.071 kb on - strand at 126.072 kb on + strand at 126.072 kb on + strand at 126.073 kb on - strand at 126.073 kb on - strand at 126.073 kb on - strand at 126.073 kb on - strand at 126.076 kb on + strand at 126.076 kb on + strand at 126.077 kb on - strand at 126.077 kb on - strand at 126.177 kb on - strand at 126.223 kb on + strand at 126.224 kb on - strand at 126.292 kb on + strand, within HMPREF1078_RS17085 at 126.293 kb on - strand, within HMPREF1078_RS17085 at 126.293 kb on - strand, within HMPREF1078_RS17085 at 126.295 kb on + strand, within HMPREF1078_RS17085 at 126.337 kb on + strand, within HMPREF1078_RS17085 at 126.361 kb on + strand, within HMPREF1078_RS17085 at 126.361 kb on + strand, within HMPREF1078_RS17085 at 126.361 kb on + strand, within HMPREF1078_RS17085 at 126.362 kb on - strand, within HMPREF1078_RS17085 at 126.362 kb on - strand, within HMPREF1078_RS17085 at 126.362 kb on - strand, within HMPREF1078_RS17085 at 126.362 kb on - strand, within HMPREF1078_RS17085 at 126.362 kb on - strand, within HMPREF1078_RS17085 at 126.366 kb on + strand, within HMPREF1078_RS17085 at 126.366 kb on + strand, within HMPREF1078_RS17085 at 126.368 kb on + strand, within HMPREF1078_RS17085 at 126.368 kb on + strand, within HMPREF1078_RS17085 at 126.368 kb on + strand, within HMPREF1078_RS17085 at 126.368 kb on + strand, within HMPREF1078_RS17085 at 126.368 kb on + strand, within HMPREF1078_RS17085 at 126.368 kb on + strand, within HMPREF1078_RS17085 at 126.369 kb on - strand, within HMPREF1078_RS17085 at 126.369 kb on - strand, within HMPREF1078_RS17085 at 126.369 kb on - strand, within HMPREF1078_RS17085 at 126.369 kb on - strand, within HMPREF1078_RS17085 at 126.372 kb on + strand, within HMPREF1078_RS17085 at 126.372 kb on + strand, within HMPREF1078_RS17085 at 126.372 kb on + strand, within HMPREF1078_RS17085 at 126.372 kb on + strand, within HMPREF1078_RS17085 at 126.373 kb on - strand, within HMPREF1078_RS17085 at 126.373 kb on - strand, within HMPREF1078_RS17085 at 126.373 kb on - strand, within HMPREF1078_RS17085 at 126.373 kb on - strand, within HMPREF1078_RS17085 at 126.374 kb on - strand, within HMPREF1078_RS17085 at 126.398 kb on - strand, within HMPREF1078_RS17085 at 126.401 kb on - strand, within HMPREF1078_RS17085 at 126.421 kb on - strand, within HMPREF1078_RS17085 at 126.456 kb on - strand, within HMPREF1078_RS17085 at 126.493 kb on - strand, within HMPREF1078_RS17085 at 126.496 kb on + strand, within HMPREF1078_RS17085 at 126.496 kb on + strand, within HMPREF1078_RS17085 at 126.497 kb on - strand, within HMPREF1078_RS17085 at 126.497 kb on - strand, within HMPREF1078_RS17085 at 126.497 kb on - strand, within HMPREF1078_RS17085 at 126.497 kb on - strand, within HMPREF1078_RS17085 at 126.497 kb on - strand, within HMPREF1078_RS17085 at 126.497 kb on - strand, within HMPREF1078_RS17085 at 126.505 kb on + strand, within HMPREF1078_RS17085 at 126.506 kb on - strand, within HMPREF1078_RS17085 at 126.506 kb on - strand, within HMPREF1078_RS17085 at 126.559 kb on - strand, within HMPREF1078_RS17085 at 126.576 kb on + strand, within HMPREF1078_RS17085 at 126.577 kb on - strand, within HMPREF1078_RS17085 at 126.577 kb on - strand, within HMPREF1078_RS17085 at 126.577 kb on - strand, within HMPREF1078_RS17085 at 126.664 kb on + strand, within HMPREF1078_RS17085 at 126.664 kb on + strand, within HMPREF1078_RS17085 at 126.664 kb on + strand, within HMPREF1078_RS17085 at 126.664 kb on + strand, within HMPREF1078_RS17085 at 126.664 kb on + strand, within HMPREF1078_RS17085 at 126.665 kb on - strand, within HMPREF1078_RS17085 at 126.669 kb on + strand, within HMPREF1078_RS17085 at 126.669 kb on + strand, within HMPREF1078_RS17085 at 126.670 kb on - strand, within HMPREF1078_RS17085 at 126.670 kb on - strand, within HMPREF1078_RS17085 at 126.715 kb on - strand, within HMPREF1078_RS17085 at 126.718 kb on - strand, within HMPREF1078_RS17085 at 126.727 kb on + strand, within HMPREF1078_RS17085 at 126.728 kb on - strand, within HMPREF1078_RS17085 at 126.748 kb on + strand, within HMPREF1078_RS17085 at 126.806 kb on + strand, within HMPREF1078_RS17085 at 126.807 kb on - strand, within HMPREF1078_RS17085 at 126.815 kb on - strand, within HMPREF1078_RS17085 at 126.838 kb on + strand, within HMPREF1078_RS17085 at 126.843 kb on + strand, within HMPREF1078_RS17085 at 126.843 kb on + strand, within HMPREF1078_RS17085 at 126.844 kb on - strand, within HMPREF1078_RS17085
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 124,221 - -0.1 124,221 - -0.6 124,223 - -0.9 124,252 + -0.2 124,264 + +0.2 124,264 + +0.6 124,357 - -2.6 124,369 - -1.1 124,376 + -1.2 124,376 + -4.3 124,376 + -1.9 124,377 - -1.5 124,385 + -3.4 124,393 + -3.9 124,393 + -3.6 124,394 - -1.9 124,394 - -1.4 124,394 - -1.7 124,469 + HMPREF1078_RS17075 0.14 -3.5 124,470 - HMPREF1078_RS17075 0.14 -1.6 124,478 + HMPREF1078_RS17075 0.15 -3.7 124,479 - HMPREF1078_RS17075 0.16 -1.6 124,556 - HMPREF1078_RS17075 0.26 -0.8 124,557 + HMPREF1078_RS17075 0.26 -2.5 124,589 + HMPREF1078_RS17075 0.30 -3.2 124,596 + HMPREF1078_RS17075 0.31 -1.9 124,597 - HMPREF1078_RS17075 0.31 -1.9 124,597 - HMPREF1078_RS17075 0.31 -1.4 124,806 + HMPREF1078_RS17075 0.59 -3.7 124,806 + HMPREF1078_RS17075 0.59 -2.1 124,815 + HMPREF1078_RS17075 0.61 -2.5 124,816 - HMPREF1078_RS17075 0.61 -2.1 124,816 - HMPREF1078_RS17075 0.61 -2.7 124,869 + HMPREF1078_RS17075 0.68 -3.6 124,869 + HMPREF1078_RS17075 0.68 -0.6 124,870 - HMPREF1078_RS17075 0.68 -3.2 124,906 + HMPREF1078_RS17075 0.73 -1.0 124,907 - HMPREF1078_RS17075 0.73 -1.5 124,930 + HMPREF1078_RS17075 0.76 -1.6 124,930 + HMPREF1078_RS17075 0.76 -1.9 124,941 + HMPREF1078_RS17075 0.77 -1.2 124,941 + HMPREF1078_RS17075 0.77 -0.9 124,954 + HMPREF1078_RS17075 0.79 -3.0 124,955 - HMPREF1078_RS17075 0.79 -2.5 124,966 - HMPREF1078_RS17075 0.81 -2.0 124,995 + HMPREF1078_RS17075 0.85 -1.1 124,996 - HMPREF1078_RS17075 0.85 -2.6 124,996 - HMPREF1078_RS17075 0.85 -1.2 125,088 - -1.2 125,097 - +0.4 125,107 + -0.6 125,130 + -1.9 125,130 + -2.1 125,130 + -2.0 125,130 + -2.8 125,291 - HMPREF1078_RS17080 0.23 -1.1 125,320 - HMPREF1078_RS17080 0.26 -1.8 125,356 - HMPREF1078_RS17080 0.31 -1.6 125,424 + HMPREF1078_RS17080 0.39 -1.8 125,424 + HMPREF1078_RS17080 0.39 -1.8 125,425 - HMPREF1078_RS17080 0.40 -0.3 125,425 - HMPREF1078_RS17080 0.40 -2.6 125,425 - HMPREF1078_RS17080 0.40 -0.2 125,443 + HMPREF1078_RS17080 0.42 -2.0 125,443 + HMPREF1078_RS17080 0.42 -3.5 125,443 + HMPREF1078_RS17080 0.42 -2.7 125,443 + HMPREF1078_RS17080 0.42 +0.0 125,535 + HMPREF1078_RS17080 0.53 -3.9 125,585 - HMPREF1078_RS17080 0.60 -1.4 125,637 + HMPREF1078_RS17080 0.66 -0.8 125,658 + HMPREF1078_RS17080 0.69 -0.2 125,671 + HMPREF1078_RS17080 0.71 -1.2 125,685 + HMPREF1078_RS17080 0.72 -1.1 125,685 + HMPREF1078_RS17080 0.72 -2.3 125,685 + HMPREF1078_RS17080 0.72 -2.0 125,686 - HMPREF1078_RS17080 0.73 -2.2 125,686 - HMPREF1078_RS17080 0.73 -1.1 125,790 + HMPREF1078_RS17080 0.86 -2.5 125,791 - HMPREF1078_RS17080 0.86 -1.9 125,873 + +0.4 125,908 - -0.0 125,958 + +1.5 125,970 + +0.1 126,015 + +0.1 126,015 + +0.2 126,015 + -0.2 126,016 - +1.0 126,016 - -0.3 126,056 + +1.2 126,057 - -0.1 126,059 + -1.0 126,066 + -0.4 126,066 + -0.3 126,066 + +1.4 126,066 + +1.1 126,066 + +1.0 126,066 + +0.0 126,067 - +0.7 126,067 - -1.8 126,067 - +0.3 126,070 + +1.0 126,070 + +0.5 126,070 + +0.5 126,071 - -0.1 126,071 - -1.0 126,071 - +0.8 126,071 - +0.4 126,072 + +0.6 126,072 + +0.2 126,073 - +0.5 126,073 - +0.6 126,073 - +0.5 126,073 - +1.1 126,076 + +0.2 126,076 + +0.4 126,077 - -0.4 126,077 - -0.1 126,177 - -0.5 126,223 + -0.5 126,224 - +0.1 126,292 + HMPREF1078_RS17085 0.11 +0.2 126,293 - HMPREF1078_RS17085 0.11 -0.4 126,293 - HMPREF1078_RS17085 0.11 +0.7 126,295 + HMPREF1078_RS17085 0.11 -0.2 126,337 + HMPREF1078_RS17085 0.13 +0.5 126,361 + HMPREF1078_RS17085 0.13 +1.3 126,361 + HMPREF1078_RS17085 0.13 -0.1 126,361 + HMPREF1078_RS17085 0.13 +0.1 126,362 - HMPREF1078_RS17085 0.13 +0.6 126,362 - HMPREF1078_RS17085 0.13 +0.5 126,362 - HMPREF1078_RS17085 0.13 -0.3 126,362 - HMPREF1078_RS17085 0.13 -0.4 126,362 - HMPREF1078_RS17085 0.13 +0.4 126,366 + HMPREF1078_RS17085 0.14 +0.6 126,366 + HMPREF1078_RS17085 0.14 +1.7 126,368 + HMPREF1078_RS17085 0.14 +0.6 126,368 + HMPREF1078_RS17085 0.14 +0.6 126,368 + HMPREF1078_RS17085 0.14 +1.0 126,368 + HMPREF1078_RS17085 0.14 +1.1 126,368 + HMPREF1078_RS17085 0.14 +1.0 126,368 + HMPREF1078_RS17085 0.14 +0.8 126,369 - HMPREF1078_RS17085 0.14 -0.3 126,369 - HMPREF1078_RS17085 0.14 +0.7 126,369 - HMPREF1078_RS17085 0.14 -0.8 126,369 - HMPREF1078_RS17085 0.14 +0.3 126,372 + HMPREF1078_RS17085 0.14 +0.8 126,372 + HMPREF1078_RS17085 0.14 +0.6 126,372 + HMPREF1078_RS17085 0.14 +0.0 126,372 + HMPREF1078_RS17085 0.14 +0.2 126,373 - HMPREF1078_RS17085 0.14 -0.3 126,373 - HMPREF1078_RS17085 0.14 -0.5 126,373 - HMPREF1078_RS17085 0.14 +2.4 126,373 - HMPREF1078_RS17085 0.14 +1.3 126,374 - HMPREF1078_RS17085 0.14 +1.0 126,398 - HMPREF1078_RS17085 0.15 +0.6 126,401 - HMPREF1078_RS17085 0.15 +1.7 126,421 - HMPREF1078_RS17085 0.16 +1.3 126,456 - HMPREF1078_RS17085 0.17 +1.6 126,493 - HMPREF1078_RS17085 0.18 +0.1 126,496 + HMPREF1078_RS17085 0.18 +0.2 126,496 + HMPREF1078_RS17085 0.18 -0.1 126,497 - HMPREF1078_RS17085 0.18 -0.2 126,497 - HMPREF1078_RS17085 0.18 +1.0 126,497 - HMPREF1078_RS17085 0.18 +1.1 126,497 - HMPREF1078_RS17085 0.18 +0.4 126,497 - HMPREF1078_RS17085 0.18 +1.0 126,497 - HMPREF1078_RS17085 0.18 -0.6 126,505 + HMPREF1078_RS17085 0.18 +0.9 126,506 - HMPREF1078_RS17085 0.18 +0.0 126,506 - HMPREF1078_RS17085 0.18 +0.8 126,559 - HMPREF1078_RS17085 0.20 +0.4 126,576 + HMPREF1078_RS17085 0.21 -0.4 126,577 - HMPREF1078_RS17085 0.21 -1.2 126,577 - HMPREF1078_RS17085 0.21 +0.1 126,577 - HMPREF1078_RS17085 0.21 +0.5 126,664 + HMPREF1078_RS17085 0.24 +0.4 126,664 + HMPREF1078_RS17085 0.24 +0.7 126,664 + HMPREF1078_RS17085 0.24 -0.6 126,664 + HMPREF1078_RS17085 0.24 +1.7 126,664 + HMPREF1078_RS17085 0.24 +0.6 126,665 - HMPREF1078_RS17085 0.24 -0.8 126,669 + HMPREF1078_RS17085 0.24 -0.6 126,669 + HMPREF1078_RS17085 0.24 -0.4 126,670 - HMPREF1078_RS17085 0.24 +1.0 126,670 - HMPREF1078_RS17085 0.24 +0.5 126,715 - HMPREF1078_RS17085 0.26 +1.3 126,718 - HMPREF1078_RS17085 0.26 -0.1 126,727 + HMPREF1078_RS17085 0.26 +0.9 126,728 - HMPREF1078_RS17085 0.26 -0.6 126,748 + HMPREF1078_RS17085 0.27 -0.0 126,806 + HMPREF1078_RS17085 0.29 +1.1 126,807 - HMPREF1078_RS17085 0.29 +0.4 126,815 - HMPREF1078_RS17085 0.29 -0.0 126,838 + HMPREF1078_RS17085 0.30 -0.2 126,843 + HMPREF1078_RS17085 0.30 +0.4 126,843 + HMPREF1078_RS17085 0.30 +0.7 126,844 - HMPREF1078_RS17085 0.30 -0.6
Or see this region's nucleotide sequence