Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16730

Experiment: D-Mannose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose 10 mg/mL (C)
58,784	+		HMPREF1078_RS16720	0.86	-2.0
58,784	+		HMPREF1078_RS16720	0.86	-0.4
58,810	+				-0.2
58,812	+				-2.0
58,812	+				-1.5
58,812	+				-1.7
58,843	+				+1.7
58,866	+				+0.6
58,880	+				+1.0
59,740	+				+1.0
59,750	+				-0.8
59,750	+				+0.7
59,810	+				-2.8
59,810	+				-3.2
59,817	+				-4.5
59,818	-				-3.0
59,932	-		HMPREF1078_RS16730	0.26	-3.8
59,932	-		HMPREF1078_RS16730	0.26	-2.3
59,942	-		HMPREF1078_RS16730	0.28	-2.8
59,947	+		HMPREF1078_RS16730	0.29	-1.4
59,948	-		HMPREF1078_RS16730	0.29	-3.1
59,974	+		HMPREF1078_RS16730	0.34	-1.8
59,975	-		HMPREF1078_RS16730	0.34	-3.7
59,975	-		HMPREF1078_RS16730	0.34	-1.7
59,979	+		HMPREF1078_RS16730	0.35	-0.5
59,979	+		HMPREF1078_RS16730	0.35	-3.7
60,057	+		HMPREF1078_RS16730	0.48	-2.5
60,058	-		HMPREF1078_RS16730	0.48	-3.0
60,186	+		HMPREF1078_RS16730	0.70	-2.2
60,265	+		HMPREF1078_RS16730	0.84	-1.9
60,266	-		HMPREF1078_RS16730	0.84	-3.5
60,269	-		HMPREF1078_RS16730	0.85	-2.6
60,343	+				-0.8
60,343	+				-3.5
60,345	+				+0.4
60,346	-				-2.3
60,346	-				-2.8
60,361	+				-0.5
60,361	+				-4.2
60,361	+				-2.9
60,361	+				-3.8
60,362	-				+0.1
60,362	-				-1.1
60,362	-				-2.6
60,362	-				+2.8
60,363	+				-1.6
60,363	+				-1.6
60,364	-				-0.7
60,365	+				-4.2
60,366	-				-0.5
60,366	-				+0.7
60,439	+		HMPREF1078_RS16735	0.12	-4.0
60,439	+		HMPREF1078_RS16735	0.12	-3.0
60,439	+		HMPREF1078_RS16735	0.12	-2.8
60,441	+		HMPREF1078_RS16735	0.12	-2.0
60,441	+		HMPREF1078_RS16735	0.12	-5.0
60,441	+		HMPREF1078_RS16735	0.12	-3.8
60,441	+		HMPREF1078_RS16735	0.12	-3.1
60,442	-		HMPREF1078_RS16735	0.12	+1.1
60,461	-		HMPREF1078_RS16735	0.15	-0.2
60,524	-		HMPREF1078_RS16735	0.24	-0.7
60,573	+		HMPREF1078_RS16735	0.31	-3.5
60,607	+		HMPREF1078_RS16735	0.36	-3.5
60,607	+		HMPREF1078_RS16735	0.36	-3.3
60,731	-		HMPREF1078_RS16735	0.53	-1.4
60,859	+		HMPREF1078_RS16735	0.72	-3.0
60,859	+		HMPREF1078_RS16735	0.72	-3.9
60,859	+		HMPREF1078_RS16735	0.72	-2.8
60,859	+		HMPREF1078_RS16735	0.72	-2.0
60,859	+		HMPREF1078_RS16735	0.72	-0.8
60,859	+		HMPREF1078_RS16735	0.72	-5.3
60,937	+		HMPREF1078_RS16735	0.83	-0.6
60,937	+		HMPREF1078_RS16735	0.83	-2.0
60,937	+		HMPREF1078_RS16735	0.83	-3.7
60,937	+		HMPREF1078_RS16735	0.83	-2.9
60,938	-		HMPREF1078_RS16735	0.83	-0.6
60,938	-		HMPREF1078_RS16735	0.83	-0.0
60,938	-		HMPREF1078_RS16735	0.83	+0.6
60,942	-		HMPREF1078_RS16735	0.83	+1.4
61,064	-				-0.3
61,071	-				-0.2
61,085	-				+0.8
61,122	+				-3.8
61,137	-				+0.4
61,137	-				+0.1
61,144	-				-0.2
61,211	+				-1.2
61,220	+				-0.2
61,220	+				-0.2
61,221	-				+0.5
61,319	+				+0.8