Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16690 and HMPREF1078_RS16695 are separated by 23 nucleotides HMPREF1078_RS16695 and HMPREF1078_RS16700 are separated by 910 nucleotides
HMPREF1078_RS16690: HMPREF1078_RS16690 - biosynthetic-type acetolactate synthase large subunit, at 50,409 to 52,109
_RS16690
HMPREF1078_RS16695: HMPREF1078_RS16695 - dihydroxy-acid dehydratase, at 52,133 to 53,968
_RS16695
HMPREF1078_RS16700: HMPREF1078_RS16700 - PatB family C-S lyase, at 54,879 to 56,054
_RS16700
Position (kb) 52
53
54 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 51.338 kb on + strand, within HMPREF1078_RS16690 at 51.345 kb on - strand, within HMPREF1078_RS16690 at 51.537 kb on - strand, within HMPREF1078_RS16690 at 51.554 kb on - strand, within HMPREF1078_RS16690 at 51.565 kb on + strand, within HMPREF1078_RS16690 at 51.566 kb on - strand, within HMPREF1078_RS16690 at 51.566 kb on - strand, within HMPREF1078_RS16690 at 51.570 kb on + strand, within HMPREF1078_RS16690 at 51.586 kb on + strand, within HMPREF1078_RS16690 at 51.650 kb on + strand, within HMPREF1078_RS16690 at 51.713 kb on - strand, within HMPREF1078_RS16690 at 51.738 kb on - strand, within HMPREF1078_RS16690 at 51.815 kb on + strand, within HMPREF1078_RS16690 at 51.858 kb on - strand, within HMPREF1078_RS16690 at 51.858 kb on - strand, within HMPREF1078_RS16690 at 51.919 kb on + strand, within HMPREF1078_RS16690 at 51.963 kb on + strand at 51.986 kb on - strand at 52.003 kb on + strand at 52.004 kb on - strand at 52.008 kb on - strand at 52.059 kb on + strand at 52.312 kb on + strand at 52.338 kb on - strand, within HMPREF1078_RS16695 at 52.338 kb on - strand, within HMPREF1078_RS16695 at 52.340 kb on - strand, within HMPREF1078_RS16695 at 52.394 kb on - strand, within HMPREF1078_RS16695 at 52.463 kb on + strand, within HMPREF1078_RS16695 at 52.464 kb on - strand, within HMPREF1078_RS16695 at 52.479 kb on - strand, within HMPREF1078_RS16695 at 52.482 kb on + strand, within HMPREF1078_RS16695 at 52.483 kb on - strand, within HMPREF1078_RS16695 at 52.483 kb on - strand, within HMPREF1078_RS16695 at 52.691 kb on - strand, within HMPREF1078_RS16695 at 52.728 kb on + strand, within HMPREF1078_RS16695 at 52.783 kb on + strand, within HMPREF1078_RS16695 at 52.783 kb on + strand, within HMPREF1078_RS16695 at 52.984 kb on + strand, within HMPREF1078_RS16695 at 52.985 kb on - strand, within HMPREF1078_RS16695 at 53.246 kb on - strand, within HMPREF1078_RS16695 at 53.246 kb on - strand, within HMPREF1078_RS16695 at 53.258 kb on + strand, within HMPREF1078_RS16695 at 53.259 kb on - strand, within HMPREF1078_RS16695 at 53.293 kb on + strand, within HMPREF1078_RS16695 at 53.309 kb on - strand, within HMPREF1078_RS16695 at 53.320 kb on + strand, within HMPREF1078_RS16695 at 53.380 kb on + strand, within HMPREF1078_RS16695 at 53.576 kb on + strand, within HMPREF1078_RS16695 at 53.577 kb on - strand, within HMPREF1078_RS16695 at 53.647 kb on + strand, within HMPREF1078_RS16695 at 53.647 kb on + strand, within HMPREF1078_RS16695 at 53.650 kb on - strand, within HMPREF1078_RS16695 at 53.671 kb on + strand, within HMPREF1078_RS16695 at 53.741 kb on - strand, within HMPREF1078_RS16695 at 53.805 kb on + strand at 53.805 kb on + strand at 53.805 kb on + strand at 53.805 kb on + strand at 53.805 kb on + strand at 53.807 kb on - strand at 53.856 kb on - strand at 53.975 kb on - strand at 54.017 kb on + strand at 54.022 kb on + strand at 54.032 kb on + strand at 54.033 kb on - strand at 54.035 kb on - strand at 54.069 kb on + strand at 54.076 kb on + strand at 54.076 kb on + strand at 54.083 kb on - strand at 54.085 kb on - strand at 54.155 kb on + strand at 54.155 kb on + strand at 54.156 kb on - strand at 54.162 kb on + strand at 54.162 kb on + strand at 54.162 kb on + strand at 54.163 kb on - strand at 54.163 kb on - strand at 54.163 kb on - strand at 54.163 kb on - strand at 54.224 kb on + strand at 54.225 kb on - strand at 54.225 kb on - strand at 54.225 kb on - strand at 54.347 kb on + strand at 54.380 kb on + strand at 54.398 kb on + strand at 54.399 kb on - strand at 54.399 kb on - strand at 54.419 kb on + strand at 54.421 kb on + strand at 54.421 kb on + strand at 54.422 kb on - strand at 54.515 kb on - strand at 54.632 kb on - strand at 54.666 kb on - strand at 54.709 kb on + strand at 54.727 kb on - strand at 54.727 kb on - strand at 54.727 kb on - strand at 54.793 kb on + strand at 54.839 kb on + strand at 54.840 kb on - strand at 54.869 kb on + strand at 54.877 kb on + strand at 54.878 kb on - strand at 54.888 kb on + strand at 54.888 kb on + strand at 54.889 kb on - strand at 54.937 kb on - strand at 54.946 kb on + strand at 54.947 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 51,338 + HMPREF1078_RS16690 0.55 -4.4 51,345 - HMPREF1078_RS16690 0.55 -2.6 51,537 - HMPREF1078_RS16690 0.66 -3.1 51,554 - HMPREF1078_RS16690 0.67 -3.8 51,565 + HMPREF1078_RS16690 0.68 -3.9 51,566 - HMPREF1078_RS16690 0.68 -3.4 51,566 - HMPREF1078_RS16690 0.68 -5.0 51,570 + HMPREF1078_RS16690 0.68 -4.0 51,586 + HMPREF1078_RS16690 0.69 -4.5 51,650 + HMPREF1078_RS16690 0.73 -2.0 51,713 - HMPREF1078_RS16690 0.77 -2.8 51,738 - HMPREF1078_RS16690 0.78 -3.7 51,815 + HMPREF1078_RS16690 0.83 -3.1 51,858 - HMPREF1078_RS16690 0.85 -0.6 51,858 - HMPREF1078_RS16690 0.85 -2.0 51,919 + HMPREF1078_RS16690 0.89 -3.1 51,963 + -0.2 51,986 - -3.3 52,003 + -3.8 52,004 - -4.8 52,008 - -1.2 52,059 + -4.6 52,312 + -1.0 52,338 - HMPREF1078_RS16695 0.11 -1.2 52,338 - HMPREF1078_RS16695 0.11 -3.8 52,340 - HMPREF1078_RS16695 0.11 -3.4 52,394 - HMPREF1078_RS16695 0.14 -3.8 52,463 + HMPREF1078_RS16695 0.18 -3.6 52,464 - HMPREF1078_RS16695 0.18 -3.8 52,479 - HMPREF1078_RS16695 0.19 -2.8 52,482 + HMPREF1078_RS16695 0.19 -2.4 52,483 - HMPREF1078_RS16695 0.19 -3.9 52,483 - HMPREF1078_RS16695 0.19 -2.0 52,691 - HMPREF1078_RS16695 0.30 -2.5 52,728 + HMPREF1078_RS16695 0.32 -4.0 52,783 + HMPREF1078_RS16695 0.35 -4.4 52,783 + HMPREF1078_RS16695 0.35 -2.8 52,984 + HMPREF1078_RS16695 0.46 -4.6 52,985 - HMPREF1078_RS16695 0.46 -0.5 53,246 - HMPREF1078_RS16695 0.61 -1.2 53,246 - HMPREF1078_RS16695 0.61 -3.8 53,258 + HMPREF1078_RS16695 0.61 -2.2 53,259 - HMPREF1078_RS16695 0.61 -1.5 53,293 + HMPREF1078_RS16695 0.63 -3.5 53,309 - HMPREF1078_RS16695 0.64 -3.2 53,320 + HMPREF1078_RS16695 0.65 -3.9 53,380 + HMPREF1078_RS16695 0.68 -1.9 53,576 + HMPREF1078_RS16695 0.79 -3.8 53,577 - HMPREF1078_RS16695 0.79 -1.3 53,647 + HMPREF1078_RS16695 0.82 -1.2 53,647 + HMPREF1078_RS16695 0.82 +0.4 53,650 - HMPREF1078_RS16695 0.83 -3.5 53,671 + HMPREF1078_RS16695 0.84 -4.3 53,741 - HMPREF1078_RS16695 0.88 -3.4 53,805 + -4.4 53,805 + -1.0 53,805 + -2.1 53,805 + -3.0 53,805 + -3.2 53,807 - -3.2 53,856 - -2.0 53,975 - -2.1 54,017 + -1.6 54,022 + -1.1 54,032 + -4.6 54,033 - +2.7 54,035 - -0.2 54,069 + -3.4 54,076 + -3.8 54,076 + -3.8 54,083 - -1.0 54,085 - -3.4 54,155 + -1.5 54,155 + -2.9 54,156 - -0.2 54,162 + -3.2 54,162 + -2.7 54,162 + -4.2 54,163 - -0.1 54,163 - -0.4 54,163 - +0.0 54,163 - -0.3 54,224 + -3.0 54,225 - +0.8 54,225 - -0.5 54,225 - +0.0 54,347 + +0.1 54,380 + +0.6 54,398 + +0.0 54,399 - -1.0 54,399 - -1.6 54,419 + +0.6 54,421 + +0.7 54,421 + +1.1 54,422 - +1.1 54,515 - -0.9 54,632 - +0.2 54,666 - +0.4 54,709 + +0.6 54,727 - -0.2 54,727 - +0.1 54,727 - -0.0 54,793 + -0.5 54,839 + +0.6 54,840 - -0.5 54,869 + -0.8 54,877 + +0.5 54,878 - +0.0 54,888 + -0.6 54,888 + -0.9 54,889 - -0.2 54,937 - +0.5 54,946 + -2.0 54,947 - -0.8
Or see this region's nucleotide sequence