Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16615 and HMPREF1078_RS16620 are separated by 159 nucleotides HMPREF1078_RS16620 and HMPREF1078_RS16625 are separated by 81 nucleotides
HMPREF1078_RS16615: HMPREF1078_RS16615 - HD domain-containing protein, at 32,257 to 33,690
_RS16615
HMPREF1078_RS16620: HMPREF1078_RS16620 - hypothetical protein, at 33,850 to 34,680
_RS16620
HMPREF1078_RS16625: HMPREF1078_RS16625 - DUF6383 domain-containing protein, at 34,762 to 37,278
_RS16625
Position (kb) 33
34
35 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 33.691 kb on - strand at 33.691 kb on - strand at 33.691 kb on - strand at 33.691 kb on - strand at 33.691 kb on - strand at 33.693 kb on - strand at 33.693 kb on - strand at 33.693 kb on - strand at 33.693 kb on - strand at 33.693 kb on - strand at 33.693 kb on - strand at 33.695 kb on - strand at 33.695 kb on - strand at 33.695 kb on - strand at 33.695 kb on - strand at 33.695 kb on - strand at 33.697 kb on - strand at 33.697 kb on - strand at 33.716 kb on - strand at 33.716 kb on - strand at 33.762 kb on - strand at 33.766 kb on - strand at 33.827 kb on + strand at 33.849 kb on - strand at 33.873 kb on - strand at 33.903 kb on + strand at 33.903 kb on + strand at 33.955 kb on + strand, within HMPREF1078_RS16620 at 33.955 kb on + strand, within HMPREF1078_RS16620 at 33.956 kb on - strand, within HMPREF1078_RS16620 at 33.956 kb on - strand, within HMPREF1078_RS16620 at 33.992 kb on + strand, within HMPREF1078_RS16620 at 34.010 kb on + strand, within HMPREF1078_RS16620 at 34.010 kb on + strand, within HMPREF1078_RS16620 at 34.010 kb on + strand, within HMPREF1078_RS16620 at 34.010 kb on + strand, within HMPREF1078_RS16620 at 34.052 kb on + strand, within HMPREF1078_RS16620 at 34.179 kb on + strand, within HMPREF1078_RS16620 at 34.195 kb on + strand, within HMPREF1078_RS16620 at 34.195 kb on + strand, within HMPREF1078_RS16620 at 34.196 kb on - strand, within HMPREF1078_RS16620 at 34.196 kb on - strand, within HMPREF1078_RS16620 at 34.240 kb on + strand, within HMPREF1078_RS16620 at 34.240 kb on + strand, within HMPREF1078_RS16620 at 34.276 kb on + strand, within HMPREF1078_RS16620 at 34.276 kb on + strand, within HMPREF1078_RS16620 at 34.317 kb on + strand, within HMPREF1078_RS16620 at 34.336 kb on - strand, within HMPREF1078_RS16620 at 34.394 kb on - strand, within HMPREF1078_RS16620 at 34.394 kb on - strand, within HMPREF1078_RS16620 at 34.409 kb on + strand, within HMPREF1078_RS16620 at 34.416 kb on + strand, within HMPREF1078_RS16620 at 34.436 kb on - strand, within HMPREF1078_RS16620 at 34.510 kb on - strand, within HMPREF1078_RS16620 at 34.525 kb on + strand, within HMPREF1078_RS16620 at 34.526 kb on - strand, within HMPREF1078_RS16620 at 34.527 kb on + strand, within HMPREF1078_RS16620 at 34.573 kb on + strand, within HMPREF1078_RS16620 at 34.573 kb on + strand, within HMPREF1078_RS16620 at 34.592 kb on + strand, within HMPREF1078_RS16620 at 34.648 kb on + strand at 34.648 kb on + strand at 34.649 kb on - strand at 34.671 kb on + strand at 34.749 kb on - strand at 34.768 kb on + strand at 34.768 kb on + strand at 34.781 kb on + strand at 34.811 kb on - strand at 34.811 kb on - strand at 34.842 kb on - strand at 34.842 kb on - strand at 34.879 kb on + strand at 34.879 kb on + strand at 34.880 kb on - strand at 34.880 kb on - strand at 34.884 kb on + strand at 34.888 kb on - strand at 34.888 kb on - strand at 34.891 kb on + strand at 34.891 kb on + strand at 34.897 kb on - strand at 34.897 kb on - strand at 34.897 kb on - strand at 34.897 kb on - strand at 35.062 kb on + strand, within HMPREF1078_RS16625 at 35.062 kb on + strand, within HMPREF1078_RS16625 at 35.063 kb on - strand, within HMPREF1078_RS16625 at 35.063 kb on - strand, within HMPREF1078_RS16625 at 35.063 kb on - strand, within HMPREF1078_RS16625 at 35.063 kb on - strand, within HMPREF1078_RS16625 at 35.063 kb on - strand, within HMPREF1078_RS16625 at 35.066 kb on + strand, within HMPREF1078_RS16625 at 35.066 kb on + strand, within HMPREF1078_RS16625 at 35.066 kb on + strand, within HMPREF1078_RS16625 at 35.067 kb on - strand, within HMPREF1078_RS16625 at 35.067 kb on - strand, within HMPREF1078_RS16625 at 35.073 kb on + strand, within HMPREF1078_RS16625 at 35.074 kb on - strand, within HMPREF1078_RS16625 at 35.074 kb on - strand, within HMPREF1078_RS16625 at 35.108 kb on + strand, within HMPREF1078_RS16625 at 35.108 kb on + strand, within HMPREF1078_RS16625 at 35.112 kb on - strand, within HMPREF1078_RS16625 at 35.198 kb on + strand, within HMPREF1078_RS16625 at 35.198 kb on + strand, within HMPREF1078_RS16625 at 35.199 kb on - strand, within HMPREF1078_RS16625 at 35.202 kb on + strand, within HMPREF1078_RS16625 at 35.229 kb on + strand, within HMPREF1078_RS16625 at 35.229 kb on + strand, within HMPREF1078_RS16625 at 35.243 kb on - strand, within HMPREF1078_RS16625 at 35.246 kb on + strand, within HMPREF1078_RS16625 at 35.329 kb on - strand, within HMPREF1078_RS16625 at 35.366 kb on + strand, within HMPREF1078_RS16625 at 35.448 kb on + strand, within HMPREF1078_RS16625 at 35.449 kb on - strand, within HMPREF1078_RS16625 at 35.449 kb on - strand, within HMPREF1078_RS16625 at 35.451 kb on - strand, within HMPREF1078_RS16625 at 35.486 kb on + strand, within HMPREF1078_RS16625 at 35.542 kb on + strand, within HMPREF1078_RS16625 at 35.542 kb on + strand, within HMPREF1078_RS16625 at 35.543 kb on - strand, within HMPREF1078_RS16625 at 35.553 kb on + strand, within HMPREF1078_RS16625 at 35.554 kb on - strand, within HMPREF1078_RS16625 at 35.554 kb on - strand, within HMPREF1078_RS16625 at 35.569 kb on + strand, within HMPREF1078_RS16625 at 35.569 kb on + strand, within HMPREF1078_RS16625 at 35.570 kb on - strand, within HMPREF1078_RS16625 at 35.570 kb on - strand, within HMPREF1078_RS16625 at 35.570 kb on - strand, within HMPREF1078_RS16625 at 35.570 kb on - strand, within HMPREF1078_RS16625 at 35.570 kb on - strand, within HMPREF1078_RS16625 at 35.570 kb on - strand, within HMPREF1078_RS16625 at 35.573 kb on + strand, within HMPREF1078_RS16625 at 35.574 kb on - strand, within HMPREF1078_RS16625 at 35.574 kb on - strand, within HMPREF1078_RS16625 at 35.574 kb on - strand, within HMPREF1078_RS16625 at 35.574 kb on - strand, within HMPREF1078_RS16625 at 35.581 kb on - strand, within HMPREF1078_RS16625 at 35.581 kb on - strand, within HMPREF1078_RS16625 at 35.600 kb on + strand, within HMPREF1078_RS16625 at 35.613 kb on + strand, within HMPREF1078_RS16625 at 35.626 kb on - strand, within HMPREF1078_RS16625 at 35.671 kb on - strand, within HMPREF1078_RS16625
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 33,691 - -0.6 33,691 - +1.1 33,691 - -0.0 33,691 - +0.8 33,691 - +0.1 33,693 - -0.6 33,693 - -0.3 33,693 - -0.6 33,693 - +1.1 33,693 - -1.5 33,693 - +0.8 33,695 - +1.4 33,695 - -0.2 33,695 - -0.1 33,695 - +0.0 33,695 - -0.4 33,697 - -0.7 33,697 - -1.0 33,716 - +0.4 33,716 - -1.3 33,762 - +0.1 33,766 - -0.9 33,827 + +0.8 33,849 - -0.8 33,873 - -1.4 33,903 + -4.2 33,903 + -1.2 33,955 + HMPREF1078_RS16620 0.13 -1.5 33,955 + HMPREF1078_RS16620 0.13 -1.5 33,956 - HMPREF1078_RS16620 0.13 -2.0 33,956 - HMPREF1078_RS16620 0.13 -1.5 33,992 + HMPREF1078_RS16620 0.17 -0.8 34,010 + HMPREF1078_RS16620 0.19 -2.4 34,010 + HMPREF1078_RS16620 0.19 -3.0 34,010 + HMPREF1078_RS16620 0.19 -1.3 34,010 + HMPREF1078_RS16620 0.19 -0.5 34,052 + HMPREF1078_RS16620 0.24 -2.6 34,179 + HMPREF1078_RS16620 0.40 -2.8 34,195 + HMPREF1078_RS16620 0.42 -2.0 34,195 + HMPREF1078_RS16620 0.42 -1.1 34,196 - HMPREF1078_RS16620 0.42 -2.5 34,196 - HMPREF1078_RS16620 0.42 -1.0 34,240 + HMPREF1078_RS16620 0.47 -1.6 34,240 + HMPREF1078_RS16620 0.47 -2.4 34,276 + HMPREF1078_RS16620 0.51 -4.0 34,276 + HMPREF1078_RS16620 0.51 -1.8 34,317 + HMPREF1078_RS16620 0.56 -1.9 34,336 - HMPREF1078_RS16620 0.58 -4.5 34,394 - HMPREF1078_RS16620 0.65 -0.9 34,394 - HMPREF1078_RS16620 0.65 -1.6 34,409 + HMPREF1078_RS16620 0.67 -1.1 34,416 + HMPREF1078_RS16620 0.68 -3.4 34,436 - HMPREF1078_RS16620 0.71 -2.4 34,510 - HMPREF1078_RS16620 0.79 -0.6 34,525 + HMPREF1078_RS16620 0.81 -3.0 34,526 - HMPREF1078_RS16620 0.81 -3.5 34,527 + HMPREF1078_RS16620 0.81 -2.6 34,573 + HMPREF1078_RS16620 0.87 -2.1 34,573 + HMPREF1078_RS16620 0.87 -3.4 34,592 + HMPREF1078_RS16620 0.89 -2.4 34,648 + -2.8 34,648 + -2.1 34,649 - -3.0 34,671 + +0.5 34,749 - -0.2 34,768 + +0.6 34,768 + +0.4 34,781 + -2.7 34,811 - -0.2 34,811 - -0.6 34,842 - -0.8 34,842 - +0.8 34,879 + +2.4 34,879 + -1.7 34,880 - -2.5 34,880 - -1.5 34,884 + -0.2 34,888 - -0.6 34,888 - -1.0 34,891 + -2.7 34,891 + -2.0 34,897 - -0.1 34,897 - -1.9 34,897 - +0.9 34,897 - -0.8 35,062 + HMPREF1078_RS16625 0.12 -0.1 35,062 + HMPREF1078_RS16625 0.12 -0.8 35,063 - HMPREF1078_RS16625 0.12 +0.5 35,063 - HMPREF1078_RS16625 0.12 -0.1 35,063 - HMPREF1078_RS16625 0.12 -0.6 35,063 - HMPREF1078_RS16625 0.12 -0.4 35,063 - HMPREF1078_RS16625 0.12 -0.7 35,066 + HMPREF1078_RS16625 0.12 -0.0 35,066 + HMPREF1078_RS16625 0.12 -0.7 35,066 + HMPREF1078_RS16625 0.12 +1.4 35,067 - HMPREF1078_RS16625 0.12 -0.7 35,067 - HMPREF1078_RS16625 0.12 +0.6 35,073 + HMPREF1078_RS16625 0.12 -0.6 35,074 - HMPREF1078_RS16625 0.12 -1.0 35,074 - HMPREF1078_RS16625 0.12 +0.0 35,108 + HMPREF1078_RS16625 0.14 -0.5 35,108 + HMPREF1078_RS16625 0.14 -1.2 35,112 - HMPREF1078_RS16625 0.14 -2.5 35,198 + HMPREF1078_RS16625 0.17 -0.1 35,198 + HMPREF1078_RS16625 0.17 -0.4 35,199 - HMPREF1078_RS16625 0.17 +0.0 35,202 + HMPREF1078_RS16625 0.17 -0.6 35,229 + HMPREF1078_RS16625 0.19 -0.4 35,229 + HMPREF1078_RS16625 0.19 -0.5 35,243 - HMPREF1078_RS16625 0.19 -0.7 35,246 + HMPREF1078_RS16625 0.19 -0.2 35,329 - HMPREF1078_RS16625 0.23 +0.0 35,366 + HMPREF1078_RS16625 0.24 -1.3 35,448 + HMPREF1078_RS16625 0.27 -1.4 35,449 - HMPREF1078_RS16625 0.27 +0.2 35,449 - HMPREF1078_RS16625 0.27 -0.1 35,451 - HMPREF1078_RS16625 0.27 -0.3 35,486 + HMPREF1078_RS16625 0.29 +0.3 35,542 + HMPREF1078_RS16625 0.31 +0.8 35,542 + HMPREF1078_RS16625 0.31 -0.5 35,543 - HMPREF1078_RS16625 0.31 -1.2 35,553 + HMPREF1078_RS16625 0.31 -0.1 35,554 - HMPREF1078_RS16625 0.31 -0.1 35,554 - HMPREF1078_RS16625 0.31 +0.3 35,569 + HMPREF1078_RS16625 0.32 -0.4 35,569 + HMPREF1078_RS16625 0.32 +1.3 35,570 - HMPREF1078_RS16625 0.32 -0.2 35,570 - HMPREF1078_RS16625 0.32 -1.0 35,570 - HMPREF1078_RS16625 0.32 -0.6 35,570 - HMPREF1078_RS16625 0.32 -0.9 35,570 - HMPREF1078_RS16625 0.32 -1.2 35,570 - HMPREF1078_RS16625 0.32 -0.8 35,573 + HMPREF1078_RS16625 0.32 -0.1 35,574 - HMPREF1078_RS16625 0.32 -0.0 35,574 - HMPREF1078_RS16625 0.32 -1.3 35,574 - HMPREF1078_RS16625 0.32 -2.8 35,574 - HMPREF1078_RS16625 0.32 -0.1 35,581 - HMPREF1078_RS16625 0.33 +0.6 35,581 - HMPREF1078_RS16625 0.33 -0.4 35,600 + HMPREF1078_RS16625 0.33 +0.3 35,613 + HMPREF1078_RS16625 0.34 +0.1 35,626 - HMPREF1078_RS16625 0.34 -0.3 35,671 - HMPREF1078_RS16625 0.36 -0.9
Or see this region's nucleotide sequence