Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16595

Experiment: D-Mannose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS16590 and HMPREF1078_RS16595 are separated by 174 nucleotidesHMPREF1078_RS16595 and HMPREF1078_RS16600 are separated by 50 nucleotides HMPREF1078_RS16590: HMPREF1078_RS16590 - DUF4301 family protein, at 26,059 to 27,579 _RS16590 HMPREF1078_RS16595: HMPREF1078_RS16595 - HD domain-containing protein, at 27,754 to 29,970 _RS16595 HMPREF1078_RS16600: HMPREF1078_RS16600 - AraC family transcriptional regulator, at 30,021 to 30,863 _RS16600 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 26.897 kb on + strand, within HMPREF1078_RS16590at 26.898 kb on - strand, within HMPREF1078_RS16590at 26.921 kb on + strand, within HMPREF1078_RS16590at 26.922 kb on - strand, within HMPREF1078_RS16590at 26.922 kb on - strand, within HMPREF1078_RS16590at 26.922 kb on - strand, within HMPREF1078_RS16590at 26.922 kb on - strand, within HMPREF1078_RS16590at 26.964 kb on + strand, within HMPREF1078_RS16590at 26.965 kb on - strand, within HMPREF1078_RS16590at 26.965 kb on - strand, within HMPREF1078_RS16590at 26.990 kb on - strand, within HMPREF1078_RS16590at 26.990 kb on - strand, within HMPREF1078_RS16590at 27.020 kb on + strand, within HMPREF1078_RS16590at 27.020 kb on + strand, within HMPREF1078_RS16590at 27.021 kb on - strand, within HMPREF1078_RS16590at 27.113 kb on + strand, within HMPREF1078_RS16590at 27.157 kb on - strand, within HMPREF1078_RS16590at 27.157 kb on - strand, within HMPREF1078_RS16590at 27.157 kb on - strand, within HMPREF1078_RS16590at 27.158 kb on + strand, within HMPREF1078_RS16590at 27.159 kb on - strand, within HMPREF1078_RS16590at 27.159 kb on - strand, within HMPREF1078_RS16590at 27.176 kb on - strand, within HMPREF1078_RS16590at 27.186 kb on + strand, within HMPREF1078_RS16590at 27.187 kb on - strand, within HMPREF1078_RS16590at 27.230 kb on + strand, within HMPREF1078_RS16590at 27.230 kb on + strand, within HMPREF1078_RS16590at 27.292 kb on - strand, within HMPREF1078_RS16590at 27.293 kb on + strand, within HMPREF1078_RS16590at 27.330 kb on + strand, within HMPREF1078_RS16590at 27.331 kb on - strand, within HMPREF1078_RS16590at 27.331 kb on - strand, within HMPREF1078_RS16590at 27.389 kb on + strand, within HMPREF1078_RS16590at 27.389 kb on + strand, within HMPREF1078_RS16590at 27.390 kb on - strand, within HMPREF1078_RS16590at 27.390 kb on - strand, within HMPREF1078_RS16590at 27.390 kb on - strand, within HMPREF1078_RS16590at 27.406 kb on + strand, within HMPREF1078_RS16590at 27.408 kb on + strand, within HMPREF1078_RS16590at 27.408 kb on + strand, within HMPREF1078_RS16590at 27.409 kb on - strand, within HMPREF1078_RS16590at 27.409 kb on - strand, within HMPREF1078_RS16590at 27.409 kb on - strand, within HMPREF1078_RS16590at 27.411 kb on - strand, within HMPREF1078_RS16590at 27.411 kb on - strand, within HMPREF1078_RS16590at 27.442 kb on - strandat 27.442 kb on - strandat 27.553 kb on + strandat 27.574 kb on + strandat 27.579 kb on + strandat 27.579 kb on + strandat 27.579 kb on + strandat 27.580 kb on - strandat 27.580 kb on - strandat 27.582 kb on + strandat 27.600 kb on + strandat 27.600 kb on + strandat 27.601 kb on - strandat 27.616 kb on + strandat 27.616 kb on + strandat 27.634 kb on + strandat 27.634 kb on + strandat 27.634 kb on + strandat 27.634 kb on + strandat 27.635 kb on - strandat 27.635 kb on - strandat 27.635 kb on - strandat 27.638 kb on + strandat 27.638 kb on + strandat 27.659 kb on - strandat 27.660 kb on - strandat 27.666 kb on - strandat 27.680 kb on - strandat 27.703 kb on - strandat 27.738 kb on - strandat 27.754 kb on - strandat 27.759 kb on + strandat 27.759 kb on + strandat 27.761 kb on + strandat 27.761 kb on + strandat 27.761 kb on + strandat 27.761 kb on + strandat 27.809 kb on - strandat 27.832 kb on + strandat 27.833 kb on - strandat 28.068 kb on - strand, within HMPREF1078_RS16595at 28.131 kb on + strand, within HMPREF1078_RS16595at 28.291 kb on + strand, within HMPREF1078_RS16595at 28.295 kb on + strand, within HMPREF1078_RS16595at 28.295 kb on + strand, within HMPREF1078_RS16595at 28.368 kb on + strand, within HMPREF1078_RS16595at 28.435 kb on + strand, within HMPREF1078_RS16595at 28.436 kb on - strand, within HMPREF1078_RS16595at 28.571 kb on + strand, within HMPREF1078_RS16595at 28.571 kb on + strand, within HMPREF1078_RS16595at 28.571 kb on + strand, within HMPREF1078_RS16595at 28.572 kb on - strand, within HMPREF1078_RS16595at 28.572 kb on - strand, within HMPREF1078_RS16595at 28.573 kb on + strand, within HMPREF1078_RS16595at 28.573 kb on + strand, within HMPREF1078_RS16595at 28.574 kb on - strand, within HMPREF1078_RS16595at 28.574 kb on - strand, within HMPREF1078_RS16595at 28.662 kb on + strand, within HMPREF1078_RS16595at 28.662 kb on + strand, within HMPREF1078_RS16595at 28.663 kb on - strand, within HMPREF1078_RS16595at 28.663 kb on - strand, within HMPREF1078_RS16595at 28.667 kb on - strand, within HMPREF1078_RS16595at 28.667 kb on - strand, within HMPREF1078_RS16595at 28.700 kb on + strand, within HMPREF1078_RS16595at 28.700 kb on + strand, within HMPREF1078_RS16595at 28.704 kb on + strand, within HMPREF1078_RS16595at 28.705 kb on - strand, within HMPREF1078_RS16595at 28.737 kb on + strand, within HMPREF1078_RS16595at 28.737 kb on + strand, within HMPREF1078_RS16595at 28.838 kb on - strand, within HMPREF1078_RS16595at 28.955 kb on - strand, within HMPREF1078_RS16595at 28.969 kb on + strand, within HMPREF1078_RS16595at 28.969 kb on + strand, within HMPREF1078_RS16595at 28.969 kb on + strand, within HMPREF1078_RS16595at 28.970 kb on - strand, within HMPREF1078_RS16595at 29.054 kb on + strand, within HMPREF1078_RS16595at 29.054 kb on + strand, within HMPREF1078_RS16595at 29.096 kb on + strand, within HMPREF1078_RS16595at 29.103 kb on + strand, within HMPREF1078_RS16595at 29.109 kb on + strand, within HMPREF1078_RS16595at 29.110 kb on - strand, within HMPREF1078_RS16595at 29.366 kb on - strand, within HMPREF1078_RS16595at 29.482 kb on + strand, within HMPREF1078_RS16595at 29.482 kb on + strand, within HMPREF1078_RS16595at 29.482 kb on + strand, within HMPREF1078_RS16595at 29.483 kb on - strand, within HMPREF1078_RS16595at 29.564 kb on - strand, within HMPREF1078_RS16595at 29.566 kb on - strand, within HMPREF1078_RS16595at 29.594 kb on - strand, within HMPREF1078_RS16595at 29.734 kb on + strand, within HMPREF1078_RS16595at 30.021 kb on - strandat 30.073 kb on - strandat 30.097 kb on + strandat 30.097 kb on + strandat 30.098 kb on - strandat 30.122 kb on - strand, within HMPREF1078_RS16600at 30.122 kb on - strand, within HMPREF1078_RS16600at 30.127 kb on - strand, within HMPREF1078_RS16600at 30.132 kb on + strand, within HMPREF1078_RS16600at 30.221 kb on - strand, within HMPREF1078_RS16600at 30.265 kb on + strand, within HMPREF1078_RS16600at 30.363 kb on + strand, within HMPREF1078_RS16600at 30.394 kb on + strand, within HMPREF1078_RS16600at 30.420 kb on + strand, within HMPREF1078_RS16600at 30.420 kb on + strand, within HMPREF1078_RS16600at 30.421 kb on - strand, within HMPREF1078_RS16600at 30.421 kb on - strand, within HMPREF1078_RS16600at 30.454 kb on + strand, within HMPREF1078_RS16600at 30.481 kb on + strand, within HMPREF1078_RS16600at 30.482 kb on - strand, within HMPREF1078_RS16600at 30.483 kb on + strand, within HMPREF1078_RS16600at 30.483 kb on + strand, within HMPREF1078_RS16600at 30.483 kb on + strand, within HMPREF1078_RS16600at 30.483 kb on + strand, within HMPREF1078_RS16600at 30.483 kb on + strand, within HMPREF1078_RS16600at 30.483 kb on + strand, within HMPREF1078_RS16600at 30.484 kb on - strand, within HMPREF1078_RS16600at 30.484 kb on - strand, within HMPREF1078_RS16600at 30.484 kb on - strand, within HMPREF1078_RS16600at 30.513 kb on + strand, within HMPREF1078_RS16600at 30.513 kb on - strand, within HMPREF1078_RS16600at 30.514 kb on - strand, within HMPREF1078_RS16600at 30.514 kb on - strand, within HMPREF1078_RS16600at 30.521 kb on + strand, within HMPREF1078_RS16600at 30.521 kb on + strand, within HMPREF1078_RS16600at 30.556 kb on + strand, within HMPREF1078_RS16600at 30.556 kb on + strand, within HMPREF1078_RS16600at 30.557 kb on - strand, within HMPREF1078_RS16600at 30.579 kb on + strand, within HMPREF1078_RS16600at 30.579 kb on + strand, within HMPREF1078_RS16600at 30.579 kb on + strand, within HMPREF1078_RS16600at 30.590 kb on + strand, within HMPREF1078_RS16600at 30.590 kb on + strand, within HMPREF1078_RS16600at 30.590 kb on + strand, within HMPREF1078_RS16600at 30.591 kb on - strand, within HMPREF1078_RS16600at 30.591 kb on - strand, within HMPREF1078_RS16600at 30.591 kb on - strand, within HMPREF1078_RS16600at 30.592 kb on + strand, within HMPREF1078_RS16600at 30.631 kb on + strand, within HMPREF1078_RS16600at 30.691 kb on + strand, within HMPREF1078_RS16600at 30.692 kb on - strand, within HMPREF1078_RS16600at 30.692 kb on - strand, within HMPREF1078_RS16600at 30.692 kb on - strand, within HMPREF1078_RS16600at 30.803 kb on + strandat 30.861 kb on + strandat 30.862 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C)
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26,897 + HMPREF1078_RS16590 0.55 -0.4
26,898 - HMPREF1078_RS16590 0.55 +0.3
26,921 + HMPREF1078_RS16590 0.57 -0.3
26,922 - HMPREF1078_RS16590 0.57 +0.2
26,922 - HMPREF1078_RS16590 0.57 +0.4
26,922 - HMPREF1078_RS16590 0.57 +1.4
26,922 - HMPREF1078_RS16590 0.57 +1.2
26,964 + HMPREF1078_RS16590 0.60 +0.1
26,965 - HMPREF1078_RS16590 0.60 +1.5
26,965 - HMPREF1078_RS16590 0.60 +0.1
26,990 - HMPREF1078_RS16590 0.61 -1.6
26,990 - HMPREF1078_RS16590 0.61 +0.4
27,020 + HMPREF1078_RS16590 0.63 +0.8
27,020 + HMPREF1078_RS16590 0.63 +0.4
27,021 - HMPREF1078_RS16590 0.63 +0.8
27,113 + HMPREF1078_RS16590 0.69 -0.2
27,157 - HMPREF1078_RS16590 0.72 -0.5
27,157 - HMPREF1078_RS16590 0.72 -1.0
27,157 - HMPREF1078_RS16590 0.72 -1.8
27,158 + HMPREF1078_RS16590 0.72 -1.4
27,159 - HMPREF1078_RS16590 0.72 +0.4
27,159 - HMPREF1078_RS16590 0.72 +0.5
27,176 - HMPREF1078_RS16590 0.73 -1.1
27,186 + HMPREF1078_RS16590 0.74 +0.6
27,187 - HMPREF1078_RS16590 0.74 +1.1
27,230 + HMPREF1078_RS16590 0.77 -0.3
27,230 + HMPREF1078_RS16590 0.77 +0.9
27,292 - HMPREF1078_RS16590 0.81 -0.4
27,293 + HMPREF1078_RS16590 0.81 -0.5
27,330 + HMPREF1078_RS16590 0.84 -0.9
27,331 - HMPREF1078_RS16590 0.84 -0.7
27,331 - HMPREF1078_RS16590 0.84 -2.5
27,389 + HMPREF1078_RS16590 0.87 +0.1
27,389 + HMPREF1078_RS16590 0.87 -0.6
27,390 - HMPREF1078_RS16590 0.88 +0.5
27,390 - HMPREF1078_RS16590 0.88 -0.5
27,390 - HMPREF1078_RS16590 0.88 -1.4
27,406 + HMPREF1078_RS16590 0.89 +0.1
27,408 + HMPREF1078_RS16590 0.89 -1.1
27,408 + HMPREF1078_RS16590 0.89 +1.5
27,409 - HMPREF1078_RS16590 0.89 +1.9
27,409 - HMPREF1078_RS16590 0.89 +0.7
27,409 - HMPREF1078_RS16590 0.89 +1.0
27,411 - HMPREF1078_RS16590 0.89 +0.6
27,411 - HMPREF1078_RS16590 0.89 +1.4
27,442 - +0.8
27,442 - -1.4
27,553 + +0.5
27,574 + -0.9
27,579 + +0.2
27,579 + +1.3
27,579 + -0.9
27,580 - +0.9
27,580 - +1.0
27,582 + +1.5
27,600 + +0.1
27,600 + -0.6
27,601 - -1.3
27,616 + -0.4
27,616 + -0.0
27,634 + +1.3
27,634 + +1.0
27,634 + -0.5
27,634 + +0.6
27,635 - -1.4
27,635 - -0.2
27,635 - +0.7
27,638 + +0.7
27,638 + +0.8
27,659 - -0.2
27,660 - -0.3
27,666 - +0.2
27,680 - +0.1
27,703 - -0.2
27,738 - -3.9
27,754 - -3.1
27,759 + -0.9
27,759 + -1.7
27,761 + -2.2
27,761 + -2.0
27,761 + -3.1
27,761 + -2.6
27,809 - -4.3
27,832 + -1.1
27,833 - -2.4
28,068 - HMPREF1078_RS16595 0.14 -1.7
28,131 + HMPREF1078_RS16595 0.17 -2.5
28,291 + HMPREF1078_RS16595 0.24 -2.8
28,295 + HMPREF1078_RS16595 0.24 -3.1
28,295 + HMPREF1078_RS16595 0.24 -1.9
28,368 + HMPREF1078_RS16595 0.28 -0.1
28,435 + HMPREF1078_RS16595 0.31 -1.0
28,436 - HMPREF1078_RS16595 0.31 -2.1
28,571 + HMPREF1078_RS16595 0.37 -2.1
28,571 + HMPREF1078_RS16595 0.37 -1.0
28,571 + HMPREF1078_RS16595 0.37 -1.6
28,572 - HMPREF1078_RS16595 0.37 -2.8
28,572 - HMPREF1078_RS16595 0.37 -3.0
28,573 + HMPREF1078_RS16595 0.37 -3.1
28,573 + HMPREF1078_RS16595 0.37 -3.3
28,574 - HMPREF1078_RS16595 0.37 -3.1
28,574 - HMPREF1078_RS16595 0.37 -2.6
28,662 + HMPREF1078_RS16595 0.41 -0.8
28,662 + HMPREF1078_RS16595 0.41 -1.6
28,663 - HMPREF1078_RS16595 0.41 -2.4
28,663 - HMPREF1078_RS16595 0.41 -1.6
28,667 - HMPREF1078_RS16595 0.41 -1.7
28,667 - HMPREF1078_RS16595 0.41 +0.8
28,700 + HMPREF1078_RS16595 0.43 -3.7
28,700 + HMPREF1078_RS16595 0.43 -2.6
28,704 + HMPREF1078_RS16595 0.43 -2.9
28,705 - HMPREF1078_RS16595 0.43 -0.7
28,737 + HMPREF1078_RS16595 0.44 -1.7
28,737 + HMPREF1078_RS16595 0.44 -1.9
28,838 - HMPREF1078_RS16595 0.49 -1.3
28,955 - HMPREF1078_RS16595 0.54 -1.0
28,969 + HMPREF1078_RS16595 0.55 -2.3
28,969 + HMPREF1078_RS16595 0.55 -2.8
28,969 + HMPREF1078_RS16595 0.55 -1.6
28,970 - HMPREF1078_RS16595 0.55 -1.3
29,054 + HMPREF1078_RS16595 0.59 -1.4
29,054 + HMPREF1078_RS16595 0.59 -3.2
29,096 + HMPREF1078_RS16595 0.61 -2.8
29,103 + HMPREF1078_RS16595 0.61 -3.0
29,109 + HMPREF1078_RS16595 0.61 -0.7
29,110 - HMPREF1078_RS16595 0.61 -2.1
29,366 - HMPREF1078_RS16595 0.73 -1.6
29,482 + HMPREF1078_RS16595 0.78 -3.0
29,482 + HMPREF1078_RS16595 0.78 -3.0
29,482 + HMPREF1078_RS16595 0.78 -2.6
29,483 - HMPREF1078_RS16595 0.78 -1.5
29,564 - HMPREF1078_RS16595 0.82 -2.1
29,566 - HMPREF1078_RS16595 0.82 -1.4
29,594 - HMPREF1078_RS16595 0.83 -0.7
29,734 + HMPREF1078_RS16595 0.89 -1.0
30,021 - -0.4
30,073 - +1.0
30,097 + +0.1
30,097 + +0.6
30,098 - +0.9
30,122 - HMPREF1078_RS16600 0.12 +2.0
30,122 - HMPREF1078_RS16600 0.12 +0.3
30,127 - HMPREF1078_RS16600 0.13 +0.4
30,132 + HMPREF1078_RS16600 0.13 +0.2
30,221 - HMPREF1078_RS16600 0.24 +0.1
30,265 + HMPREF1078_RS16600 0.29 +0.6
30,363 + HMPREF1078_RS16600 0.41 +1.1
30,394 + HMPREF1078_RS16600 0.44 -0.2
30,420 + HMPREF1078_RS16600 0.47 -0.8
30,420 + HMPREF1078_RS16600 0.47 -1.7
30,421 - HMPREF1078_RS16600 0.47 -1.1
30,421 - HMPREF1078_RS16600 0.47 -0.1
30,454 + HMPREF1078_RS16600 0.51 -0.0
30,481 + HMPREF1078_RS16600 0.55 +0.7
30,482 - HMPREF1078_RS16600 0.55 +0.5
30,483 + HMPREF1078_RS16600 0.55 -2.4
30,483 + HMPREF1078_RS16600 0.55 -0.2
30,483 + HMPREF1078_RS16600 0.55 +0.1
30,483 + HMPREF1078_RS16600 0.55 -1.6
30,483 + HMPREF1078_RS16600 0.55 -0.3
30,483 + HMPREF1078_RS16600 0.55 +0.8
30,484 - HMPREF1078_RS16600 0.55 +0.8
30,484 - HMPREF1078_RS16600 0.55 -0.6
30,484 - HMPREF1078_RS16600 0.55 -0.7
30,513 + HMPREF1078_RS16600 0.58 -0.1
30,513 - HMPREF1078_RS16600 0.58 -0.5
30,514 - HMPREF1078_RS16600 0.58 +0.2
30,514 - HMPREF1078_RS16600 0.58 -0.5
30,521 + HMPREF1078_RS16600 0.59 -0.5
30,521 + HMPREF1078_RS16600 0.59 +0.1
30,556 + HMPREF1078_RS16600 0.63 +0.8
30,556 + HMPREF1078_RS16600 0.63 -0.1
30,557 - HMPREF1078_RS16600 0.64 -0.1
30,579 + HMPREF1078_RS16600 0.66 +0.7
30,579 + HMPREF1078_RS16600 0.66 -0.6
30,579 + HMPREF1078_RS16600 0.66 -0.0
30,590 + HMPREF1078_RS16600 0.67 -1.0
30,590 + HMPREF1078_RS16600 0.67 -1.2
30,590 + HMPREF1078_RS16600 0.67 -0.2
30,591 - HMPREF1078_RS16600 0.68 +0.2
30,591 - HMPREF1078_RS16600 0.68 -0.9
30,591 - HMPREF1078_RS16600 0.68 +0.4
30,592 + HMPREF1078_RS16600 0.68 +0.2
30,631 + HMPREF1078_RS16600 0.72 +0.1
30,691 + HMPREF1078_RS16600 0.79 -0.1
30,692 - HMPREF1078_RS16600 0.80 +0.6
30,692 - HMPREF1078_RS16600 0.80 -0.2
30,692 - HMPREF1078_RS16600 0.80 -0.2
30,803 + -0.2
30,861 + -0.1
30,862 - +0.7

Or see this region's nucleotide sequence