Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16065 and HMPREF1078_RS16070 are separated by 98 nucleotides HMPREF1078_RS16070 and HMPREF1078_RS16075 are separated by 63 nucleotides HMPREF1078_RS16075 and HMPREF1078_RS16080 are separated by 98 nucleotides
HMPREF1078_RS16065: HMPREF1078_RS16065 - class II fructose-1,6-bisphosphate aldolase, at 337,142 to 338,140
_RS16065
HMPREF1078_RS16070: HMPREF1078_RS16070 - DUF4923 family protein, at 338,239 to 338,859
_RS16070
HMPREF1078_RS16075: HMPREF1078_RS16075 - AAA family ATPase, at 338,923 to 341,049
_RS16075
HMPREF1078_RS16080: HMPREF1078_RS16080 - TrkA C-terminal domain-containing protein, at 341,148 to 342,746
_RS16080
Position (kb) 338
339
340
341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 338.138 kb on + strand at 338.138 kb on + strand at 338.161 kb on + strand at 338.161 kb on + strand at 338.161 kb on + strand at 338.161 kb on + strand at 338.162 kb on - strand at 338.163 kb on + strand at 338.163 kb on + strand at 338.164 kb on - strand at 338.164 kb on - strand at 338.164 kb on - strand at 338.164 kb on - strand at 338.164 kb on - strand at 338.193 kb on + strand at 338.194 kb on - strand at 338.212 kb on + strand at 338.212 kb on + strand at 338.213 kb on - strand at 338.213 kb on - strand at 338.213 kb on - strand at 338.213 kb on - strand at 338.214 kb on + strand at 338.215 kb on - strand at 338.215 kb on - strand at 338.224 kb on + strand at 338.224 kb on + strand at 338.224 kb on + strand at 338.225 kb on - strand at 338.225 kb on - strand at 338.225 kb on - strand at 338.225 kb on - strand at 338.234 kb on + strand at 338.234 kb on + strand at 338.277 kb on + strand at 338.277 kb on + strand at 338.277 kb on + strand at 338.279 kb on + strand at 338.279 kb on + strand at 338.279 kb on + strand at 338.279 kb on + strand at 338.280 kb on - strand at 338.280 kb on - strand at 338.302 kb on + strand, within HMPREF1078_RS16070 at 338.316 kb on + strand, within HMPREF1078_RS16070 at 338.403 kb on + strand, within HMPREF1078_RS16070 at 338.413 kb on + strand, within HMPREF1078_RS16070 at 338.413 kb on + strand, within HMPREF1078_RS16070 at 338.413 kb on + strand, within HMPREF1078_RS16070 at 338.414 kb on - strand, within HMPREF1078_RS16070 at 338.414 kb on - strand, within HMPREF1078_RS16070 at 338.414 kb on - strand, within HMPREF1078_RS16070 at 338.414 kb on - strand, within HMPREF1078_RS16070 at 338.414 kb on - strand, within HMPREF1078_RS16070 at 338.509 kb on + strand, within HMPREF1078_RS16070 at 338.510 kb on - strand, within HMPREF1078_RS16070 at 338.510 kb on - strand, within HMPREF1078_RS16070 at 338.528 kb on + strand, within HMPREF1078_RS16070 at 338.529 kb on - strand, within HMPREF1078_RS16070 at 338.550 kb on + strand, within HMPREF1078_RS16070 at 338.556 kb on + strand, within HMPREF1078_RS16070 at 338.557 kb on - strand, within HMPREF1078_RS16070 at 338.607 kb on + strand, within HMPREF1078_RS16070 at 338.608 kb on - strand, within HMPREF1078_RS16070 at 338.608 kb on - strand, within HMPREF1078_RS16070 at 338.611 kb on + strand, within HMPREF1078_RS16070 at 338.611 kb on + strand, within HMPREF1078_RS16070 at 338.611 kb on + strand, within HMPREF1078_RS16070 at 338.632 kb on - strand, within HMPREF1078_RS16070 at 338.632 kb on - strand, within HMPREF1078_RS16070 at 338.664 kb on + strand, within HMPREF1078_RS16070 at 338.792 kb on + strand, within HMPREF1078_RS16070 at 338.792 kb on + strand, within HMPREF1078_RS16070 at 338.793 kb on - strand, within HMPREF1078_RS16070 at 338.793 kb on - strand, within HMPREF1078_RS16070 at 338.806 kb on - strand at 338.806 kb on - strand at 338.806 kb on - strand at 338.821 kb on + strand at 338.822 kb on - strand at 338.822 kb on - strand at 338.861 kb on + strand at 338.861 kb on + strand at 338.861 kb on + strand at 338.873 kb on - strand at 338.894 kb on + strand at 338.895 kb on - strand at 338.901 kb on - strand at 338.904 kb on - strand at 338.904 kb on - strand at 338.904 kb on - strand at 338.905 kb on + strand at 338.905 kb on + strand at 338.906 kb on - strand at 338.906 kb on - strand at 338.906 kb on - strand at 338.940 kb on - strand at 338.940 kb on - strand at 338.947 kb on + strand at 338.948 kb on - strand at 339.080 kb on + strand at 339.080 kb on + strand at 339.080 kb on + strand at 339.137 kb on + strand, within HMPREF1078_RS16075 at 339.138 kb on - strand, within HMPREF1078_RS16075 at 339.139 kb on + strand, within HMPREF1078_RS16075 at 339.139 kb on + strand, within HMPREF1078_RS16075 at 339.139 kb on + strand, within HMPREF1078_RS16075 at 339.140 kb on - strand, within HMPREF1078_RS16075 at 339.140 kb on - strand, within HMPREF1078_RS16075 at 339.140 kb on - strand, within HMPREF1078_RS16075 at 339.140 kb on - strand, within HMPREF1078_RS16075 at 339.140 kb on - strand, within HMPREF1078_RS16075 at 339.140 kb on - strand, within HMPREF1078_RS16075 at 339.167 kb on - strand, within HMPREF1078_RS16075 at 339.424 kb on + strand, within HMPREF1078_RS16075 at 339.424 kb on + strand, within HMPREF1078_RS16075 at 339.425 kb on - strand, within HMPREF1078_RS16075 at 339.580 kb on - strand, within HMPREF1078_RS16075 at 339.580 kb on - strand, within HMPREF1078_RS16075 at 339.584 kb on + strand, within HMPREF1078_RS16075 at 339.585 kb on - strand, within HMPREF1078_RS16075 at 339.608 kb on - strand, within HMPREF1078_RS16075 at 339.608 kb on - strand, within HMPREF1078_RS16075 at 339.627 kb on - strand, within HMPREF1078_RS16075 at 339.644 kb on + strand, within HMPREF1078_RS16075 at 339.645 kb on - strand, within HMPREF1078_RS16075 at 339.645 kb on - strand, within HMPREF1078_RS16075 at 339.650 kb on - strand, within HMPREF1078_RS16075 at 339.704 kb on + strand, within HMPREF1078_RS16075 at 339.705 kb on - strand, within HMPREF1078_RS16075 at 339.785 kb on + strand, within HMPREF1078_RS16075 at 339.863 kb on + strand, within HMPREF1078_RS16075 at 339.863 kb on + strand, within HMPREF1078_RS16075 at 339.864 kb on - strand, within HMPREF1078_RS16075 at 339.864 kb on - strand, within HMPREF1078_RS16075 at 339.864 kb on - strand, within HMPREF1078_RS16075 at 339.864 kb on - strand, within HMPREF1078_RS16075 at 339.864 kb on - strand, within HMPREF1078_RS16075 at 339.864 kb on - strand, within HMPREF1078_RS16075 at 339.864 kb on - strand, within HMPREF1078_RS16075 at 339.864 kb on - strand, within HMPREF1078_RS16075 at 339.865 kb on + strand, within HMPREF1078_RS16075 at 339.865 kb on + strand, within HMPREF1078_RS16075 at 339.865 kb on + strand, within HMPREF1078_RS16075 at 339.866 kb on - strand, within HMPREF1078_RS16075 at 339.866 kb on - strand, within HMPREF1078_RS16075 at 339.866 kb on - strand, within HMPREF1078_RS16075 at 339.937 kb on + strand, within HMPREF1078_RS16075 at 339.938 kb on - strand, within HMPREF1078_RS16075 at 339.938 kb on - strand, within HMPREF1078_RS16075 at 339.938 kb on - strand, within HMPREF1078_RS16075 at 339.938 kb on - strand, within HMPREF1078_RS16075 at 340.093 kb on + strand, within HMPREF1078_RS16075 at 340.094 kb on - strand, within HMPREF1078_RS16075 at 340.111 kb on - strand, within HMPREF1078_RS16075 at 340.114 kb on + strand, within HMPREF1078_RS16075 at 340.137 kb on + strand, within HMPREF1078_RS16075 at 340.138 kb on - strand, within HMPREF1078_RS16075 at 340.138 kb on - strand, within HMPREF1078_RS16075 at 340.140 kb on - strand, within HMPREF1078_RS16075 at 340.205 kb on - strand, within HMPREF1078_RS16075 at 340.205 kb on - strand, within HMPREF1078_RS16075 at 340.229 kb on + strand, within HMPREF1078_RS16075 at 340.269 kb on - strand, within HMPREF1078_RS16075 at 340.327 kb on - strand, within HMPREF1078_RS16075 at 340.344 kb on + strand, within HMPREF1078_RS16075 at 340.344 kb on + strand, within HMPREF1078_RS16075 at 340.346 kb on + strand, within HMPREF1078_RS16075 at 340.347 kb on - strand, within HMPREF1078_RS16075 at 340.382 kb on + strand, within HMPREF1078_RS16075 at 340.495 kb on - strand, within HMPREF1078_RS16075 at 340.495 kb on - strand, within HMPREF1078_RS16075 at 340.502 kb on + strand, within HMPREF1078_RS16075 at 340.606 kb on + strand, within HMPREF1078_RS16075 at 340.607 kb on - strand, within HMPREF1078_RS16075 at 340.616 kb on - strand, within HMPREF1078_RS16075 at 340.624 kb on + strand, within HMPREF1078_RS16075 at 340.647 kb on + strand, within HMPREF1078_RS16075 at 340.647 kb on + strand, within HMPREF1078_RS16075 at 340.659 kb on + strand, within HMPREF1078_RS16075 at 340.753 kb on - strand, within HMPREF1078_RS16075 at 340.826 kb on + strand, within HMPREF1078_RS16075 at 340.826 kb on + strand, within HMPREF1078_RS16075 at 340.826 kb on + strand, within HMPREF1078_RS16075 at 340.827 kb on - strand, within HMPREF1078_RS16075 at 340.881 kb on + strand at 340.882 kb on - strand at 340.889 kb on - strand at 340.889 kb on - strand at 340.889 kb on - strand at 340.889 kb on - strand at 340.936 kb on - strand at 341.081 kb on + strand at 341.081 kb on + strand at 341.123 kb on + strand at 341.142 kb on + strand at 341.143 kb on - strand at 341.143 kb on - strand at 341.150 kb on - strand at 341.151 kb on + strand at 341.152 kb on - strand at 341.187 kb on + strand at 341.188 kb on - strand at 341.400 kb on + strand, within HMPREF1078_RS16080 at 341.497 kb on - strand, within HMPREF1078_RS16080 at 341.497 kb on - strand, within HMPREF1078_RS16080 at 341.497 kb on - strand, within HMPREF1078_RS16080 at 341.646 kb on + strand, within HMPREF1078_RS16080 at 341.647 kb on - strand, within HMPREF1078_RS16080 at 341.737 kb on - strand, within HMPREF1078_RS16080 at 341.841 kb on - strand, within HMPREF1078_RS16080 at 341.870 kb on - strand, within HMPREF1078_RS16080 at 341.875 kb on - strand, within HMPREF1078_RS16080
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 338,138 + +0.4 338,138 + +1.8 338,161 + -0.2 338,161 + -0.0 338,161 + -0.6 338,161 + +0.3 338,162 - -0.3 338,163 + -0.3 338,163 + -0.4 338,164 - -0.0 338,164 - -1.0 338,164 - +1.6 338,164 - +0.3 338,164 - +0.7 338,193 + +0.4 338,194 - -0.0 338,212 + +0.3 338,212 + +0.9 338,213 - +0.3 338,213 - -0.9 338,213 - +0.3 338,213 - -1.2 338,214 + -0.1 338,215 - -0.3 338,215 - +0.3 338,224 + -0.3 338,224 + +0.1 338,224 + +1.2 338,225 - +0.3 338,225 - -0.7 338,225 - +0.4 338,225 - +0.9 338,234 + +0.0 338,234 + +0.5 338,277 + -0.3 338,277 + -0.5 338,277 + -0.5 338,279 + -0.1 338,279 + -0.4 338,279 + +0.6 338,279 + -1.4 338,280 - +0.0 338,280 - +0.1 338,302 + HMPREF1078_RS16070 0.10 +0.7 338,316 + HMPREF1078_RS16070 0.12 +0.5 338,403 + HMPREF1078_RS16070 0.26 +0.3 338,413 + HMPREF1078_RS16070 0.28 -0.6 338,413 + HMPREF1078_RS16070 0.28 -0.4 338,413 + HMPREF1078_RS16070 0.28 +0.8 338,414 - HMPREF1078_RS16070 0.28 +1.0 338,414 - HMPREF1078_RS16070 0.28 +0.1 338,414 - HMPREF1078_RS16070 0.28 +1.5 338,414 - HMPREF1078_RS16070 0.28 -1.5 338,414 - HMPREF1078_RS16070 0.28 +0.2 338,509 + HMPREF1078_RS16070 0.43 +1.2 338,510 - HMPREF1078_RS16070 0.44 -0.6 338,510 - HMPREF1078_RS16070 0.44 -1.1 338,528 + HMPREF1078_RS16070 0.47 -0.3 338,529 - HMPREF1078_RS16070 0.47 +0.4 338,550 + HMPREF1078_RS16070 0.50 +0.7 338,556 + HMPREF1078_RS16070 0.51 -1.1 338,557 - HMPREF1078_RS16070 0.51 +0.9 338,607 + HMPREF1078_RS16070 0.59 +0.8 338,608 - HMPREF1078_RS16070 0.59 +0.1 338,608 - HMPREF1078_RS16070 0.59 +0.5 338,611 + HMPREF1078_RS16070 0.60 +1.1 338,611 + HMPREF1078_RS16070 0.60 +0.3 338,611 + HMPREF1078_RS16070 0.60 -0.3 338,632 - HMPREF1078_RS16070 0.63 -1.1 338,632 - HMPREF1078_RS16070 0.63 +0.5 338,664 + HMPREF1078_RS16070 0.68 -1.4 338,792 + HMPREF1078_RS16070 0.89 -1.2 338,792 + HMPREF1078_RS16070 0.89 -0.5 338,793 - HMPREF1078_RS16070 0.89 -0.6 338,793 - HMPREF1078_RS16070 0.89 +0.8 338,806 - -0.3 338,806 - -1.0 338,806 - +1.8 338,821 + -1.1 338,822 - +0.0 338,822 - -0.5 338,861 + -0.2 338,861 + -1.3 338,861 + +1.7 338,873 - -1.0 338,894 + -0.2 338,895 - -0.0 338,901 - +0.7 338,904 - +0.5 338,904 - -0.3 338,904 - -0.4 338,905 + -0.5 338,905 + +1.0 338,906 - +0.2 338,906 - +0.8 338,906 - -0.5 338,940 - -0.7 338,940 - +0.2 338,947 + -0.9 338,948 - -0.7 339,080 + -0.1 339,080 + +0.3 339,080 + -0.6 339,137 + HMPREF1078_RS16075 0.10 -0.7 339,138 - HMPREF1078_RS16075 0.10 +0.3 339,139 + HMPREF1078_RS16075 0.10 -1.4 339,139 + HMPREF1078_RS16075 0.10 -0.3 339,139 + HMPREF1078_RS16075 0.10 -0.7 339,140 - HMPREF1078_RS16075 0.10 -0.0 339,140 - HMPREF1078_RS16075 0.10 -0.1 339,140 - HMPREF1078_RS16075 0.10 +0.3 339,140 - HMPREF1078_RS16075 0.10 -1.2 339,140 - HMPREF1078_RS16075 0.10 -1.1 339,140 - HMPREF1078_RS16075 0.10 -1.4 339,167 - HMPREF1078_RS16075 0.11 -0.2 339,424 + HMPREF1078_RS16075 0.24 -1.1 339,424 + HMPREF1078_RS16075 0.24 +0.7 339,425 - HMPREF1078_RS16075 0.24 -0.1 339,580 - HMPREF1078_RS16075 0.31 +0.1 339,580 - HMPREF1078_RS16075 0.31 +0.7 339,584 + HMPREF1078_RS16075 0.31 +0.3 339,585 - HMPREF1078_RS16075 0.31 -1.8 339,608 - HMPREF1078_RS16075 0.32 -0.1 339,608 - HMPREF1078_RS16075 0.32 +0.6 339,627 - HMPREF1078_RS16075 0.33 +0.9 339,644 + HMPREF1078_RS16075 0.34 +0.3 339,645 - HMPREF1078_RS16075 0.34 +0.4 339,645 - HMPREF1078_RS16075 0.34 +0.1 339,650 - HMPREF1078_RS16075 0.34 +0.1 339,704 + HMPREF1078_RS16075 0.37 +1.2 339,705 - HMPREF1078_RS16075 0.37 +1.2 339,785 + HMPREF1078_RS16075 0.41 +0.1 339,863 + HMPREF1078_RS16075 0.44 -1.9 339,863 + HMPREF1078_RS16075 0.44 -0.3 339,864 - HMPREF1078_RS16075 0.44 -2.1 339,864 - HMPREF1078_RS16075 0.44 +1.1 339,864 - HMPREF1078_RS16075 0.44 +0.5 339,864 - HMPREF1078_RS16075 0.44 +0.6 339,864 - HMPREF1078_RS16075 0.44 -0.5 339,864 - HMPREF1078_RS16075 0.44 +0.3 339,864 - HMPREF1078_RS16075 0.44 +0.5 339,864 - HMPREF1078_RS16075 0.44 +0.9 339,865 + HMPREF1078_RS16075 0.44 +0.6 339,865 + HMPREF1078_RS16075 0.44 -0.2 339,865 + HMPREF1078_RS16075 0.44 +0.1 339,866 - HMPREF1078_RS16075 0.44 -1.5 339,866 - HMPREF1078_RS16075 0.44 -2.1 339,866 - HMPREF1078_RS16075 0.44 -2.4 339,937 + HMPREF1078_RS16075 0.48 +0.2 339,938 - HMPREF1078_RS16075 0.48 -0.2 339,938 - HMPREF1078_RS16075 0.48 -1.6 339,938 - HMPREF1078_RS16075 0.48 -0.9 339,938 - HMPREF1078_RS16075 0.48 -0.7 340,093 + HMPREF1078_RS16075 0.55 -0.1 340,094 - HMPREF1078_RS16075 0.55 -0.3 340,111 - HMPREF1078_RS16075 0.56 -1.3 340,114 + HMPREF1078_RS16075 0.56 -0.2 340,137 + HMPREF1078_RS16075 0.57 +1.1 340,138 - HMPREF1078_RS16075 0.57 -0.4 340,138 - HMPREF1078_RS16075 0.57 +0.4 340,140 - HMPREF1078_RS16075 0.57 +0.7 340,205 - HMPREF1078_RS16075 0.60 -0.1 340,205 - HMPREF1078_RS16075 0.60 +1.1 340,229 + HMPREF1078_RS16075 0.61 -0.3 340,269 - HMPREF1078_RS16075 0.63 +0.1 340,327 - HMPREF1078_RS16075 0.66 +0.6 340,344 + HMPREF1078_RS16075 0.67 -0.1 340,344 + HMPREF1078_RS16075 0.67 +0.4 340,346 + HMPREF1078_RS16075 0.67 -1.9 340,347 - HMPREF1078_RS16075 0.67 -0.5 340,382 + HMPREF1078_RS16075 0.69 -0.4 340,495 - HMPREF1078_RS16075 0.74 +0.6 340,495 - HMPREF1078_RS16075 0.74 +0.6 340,502 + HMPREF1078_RS16075 0.74 -0.5 340,606 + HMPREF1078_RS16075 0.79 +0.8 340,607 - HMPREF1078_RS16075 0.79 +0.4 340,616 - HMPREF1078_RS16075 0.80 -0.5 340,624 + HMPREF1078_RS16075 0.80 -1.1 340,647 + HMPREF1078_RS16075 0.81 +0.9 340,647 + HMPREF1078_RS16075 0.81 -0.2 340,659 + HMPREF1078_RS16075 0.82 -0.3 340,753 - HMPREF1078_RS16075 0.86 +0.5 340,826 + HMPREF1078_RS16075 0.89 +0.6 340,826 + HMPREF1078_RS16075 0.89 -0.7 340,826 + HMPREF1078_RS16075 0.89 +1.3 340,827 - HMPREF1078_RS16075 0.90 -0.1 340,881 + -0.3 340,882 - +0.2 340,889 - +0.1 340,889 - -1.2 340,889 - -0.6 340,889 - +0.5 340,936 - -0.4 341,081 + +0.5 341,081 + +0.1 341,123 + -0.1 341,142 + -1.9 341,143 - -0.5 341,143 - +0.0 341,150 - +0.0 341,151 + +0.4 341,152 - +0.2 341,187 + +1.5 341,188 - -0.9 341,400 + HMPREF1078_RS16080 0.16 -2.0 341,497 - HMPREF1078_RS16080 0.22 +0.8 341,497 - HMPREF1078_RS16080 0.22 +0.5 341,497 - HMPREF1078_RS16080 0.22 -0.5 341,646 + HMPREF1078_RS16080 0.31 +1.9 341,647 - HMPREF1078_RS16080 0.31 -0.9 341,737 - HMPREF1078_RS16080 0.37 +0.7 341,841 - HMPREF1078_RS16080 0.43 -0.2 341,870 - HMPREF1078_RS16080 0.45 -3.2 341,875 - HMPREF1078_RS16080 0.45 -1.0
Or see this region's nucleotide sequence