Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS15310

Experiment: D-Mannose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose 10 mg/mL (C)
145,503	-		HMPREF1078_RS15300	0.40	-2.3
145,512	+		HMPREF1078_RS15300	0.41	-1.5
145,539	+		HMPREF1078_RS15300	0.44	-0.3
145,600	-		HMPREF1078_RS15300	0.50	-2.5
145,600	-		HMPREF1078_RS15300	0.50	-1.1
145,724	+		HMPREF1078_RS15300	0.63	-0.6
145,736	+		HMPREF1078_RS15300	0.64	+0.2
145,736	+		HMPREF1078_RS15300	0.64	-2.2
145,737	-		HMPREF1078_RS15300	0.64	-3.2
145,796	+		HMPREF1078_RS15300	0.70	-3.3
145,802	+		HMPREF1078_RS15300	0.71	-4.9
145,803	-		HMPREF1078_RS15300	0.71	-1.9
145,820	+		HMPREF1078_RS15300	0.73	-2.9
146,090	-				-1.6
146,090	-				-1.4
146,090	-				-1.7
146,103	+				-1.8
146,104	-				-1.7
146,104	-				-0.3
146,105	+				-2.4
146,135	-		HMPREF1078_RS15305	0.12	-0.2
146,137	-		HMPREF1078_RS15305	0.13	-0.7
146,168	-		HMPREF1078_RS15305	0.20	+0.0
146,177	+		HMPREF1078_RS15305	0.22	-1.3
146,178	-		HMPREF1078_RS15305	0.23	-1.8
146,187	+		HMPREF1078_RS15305	0.25	-1.3
146,188	-		HMPREF1078_RS15305	0.25	-3.6
146,225	+		HMPREF1078_RS15305	0.34	-3.5
146,225	+		HMPREF1078_RS15305	0.34	-3.2
146,225	+		HMPREF1078_RS15305	0.34	-1.4
146,226	-		HMPREF1078_RS15305	0.34	-0.9
146,226	-		HMPREF1078_RS15305	0.34	-2.4
146,226	-		HMPREF1078_RS15305	0.34	-2.8
146,226	-		HMPREF1078_RS15305	0.34	-2.9
146,226	-		HMPREF1078_RS15305	0.34	-2.0
146,281	+		HMPREF1078_RS15305	0.48	-4.1
146,281	+		HMPREF1078_RS15305	0.48	-2.4
146,281	+		HMPREF1078_RS15305	0.48	-2.0
146,281	+		HMPREF1078_RS15305	0.48	-2.8
146,282	-		HMPREF1078_RS15305	0.48	-3.0
146,282	-		HMPREF1078_RS15305	0.48	-0.1
146,282	-		HMPREF1078_RS15305	0.48	-3.1
146,338	+		HMPREF1078_RS15305	0.61	-1.4
146,338	+		HMPREF1078_RS15305	0.61	-2.1
146,338	+		HMPREF1078_RS15305	0.61	-0.9
146,339	-		HMPREF1078_RS15305	0.62	-1.4
146,339	-		HMPREF1078_RS15305	0.62	-3.1
146,339	-		HMPREF1078_RS15305	0.62	-3.6
146,343	-		HMPREF1078_RS15305	0.63	-2.6
146,375	+		HMPREF1078_RS15305	0.70	-3.5
146,375	+		HMPREF1078_RS15305	0.70	-2.3
146,376	-		HMPREF1078_RS15305	0.71	-1.6
146,376	-		HMPREF1078_RS15305	0.71	-2.1
146,376	-		HMPREF1078_RS15305	0.71	-2.2
146,377	-		HMPREF1078_RS15305	0.71	+2.3
146,414	+		HMPREF1078_RS15305	0.80	-2.2
146,414	+		HMPREF1078_RS15305	0.80	-2.6
146,415	-		HMPREF1078_RS15305	0.80	-1.8
146,417	-		HMPREF1078_RS15305	0.80	-4.3
146,434	-		HMPREF1078_RS15305	0.85	-2.6
146,476	+				-2.7
146,476	+				-1.6
146,476	+				-0.6
146,477	-				-0.8
146,477	-				-2.0
146,477	-				-3.3
146,477	-				-2.0
146,478	+				-1.5
146,478	+				-1.2
146,478	+				-2.8
146,479	-				-3.0
146,479	-				-2.9
146,479	-				-1.0
146,479	-				-2.3
146,479	-				-1.4
146,479	-				-2.4
146,479	-				-1.0
146,479	-				-2.0
146,479	-				-3.9
146,479	-				-2.4
146,479	-				-2.9
146,479	-				-1.7
146,479	-				-1.0
146,482	+				-3.4
146,482	+				-3.4
146,482	+				+0.7
146,482	+				-2.4
146,482	+				-1.7
146,482	+				-2.2
146,483	-				-0.7
146,483	-				-1.9
146,483	-				-2.4
146,483	-				-2.6
146,483	-				-1.4
146,483	-				-1.2
146,483	-				-2.1
146,484	+				-2.5
146,485	-				-2.4
146,485	-				-1.2
146,504	-				-1.3
146,562	+				-0.6
146,562	+				-0.3
146,563	-				+1.1
146,563	-				-2.5
146,584	-				-0.8
146,600	+				-1.8
146,600	+				-1.0
146,600	+				-2.4
146,600	+				-1.5
146,600	+				-0.2
146,600	+				-1.9
146,601	-				-1.3
146,601	-				+0.8
146,601	-				+0.1
146,601	-				+1.6
146,601	-				-2.1
146,601	-				+0.2
146,622	+				-0.8
146,623	-				-0.1
146,635	+				-2.9
146,679	-		HMPREF1078_RS15310	0.12	+2.2
146,679	-		HMPREF1078_RS15310	0.12	-0.3
146,679	-		HMPREF1078_RS15310	0.12	+1.1
146,686	+		HMPREF1078_RS15310	0.12	-3.4
146,737	-		HMPREF1078_RS15310	0.15	-0.8
146,737	-		HMPREF1078_RS15310	0.15	+0.1
146,753	+		HMPREF1078_RS15310	0.16	-0.3
146,753	+		HMPREF1078_RS15310	0.16	-1.9
146,868	+		HMPREF1078_RS15310	0.24	-2.0
146,869	-		HMPREF1078_RS15310	0.24	-2.4
147,027	+		HMPREF1078_RS15310	0.34	-3.0
147,028	-		HMPREF1078_RS15310	0.34	-2.5
147,053	+		HMPREF1078_RS15310	0.36	-2.6
147,053	+		HMPREF1078_RS15310	0.36	-1.3
147,054	-		HMPREF1078_RS15310	0.36	-2.6
147,054	-		HMPREF1078_RS15310	0.36	-3.3
147,054	-		HMPREF1078_RS15310	0.36	-3.6
147,056	-		HMPREF1078_RS15310	0.36	-3.2
147,066	+		HMPREF1078_RS15310	0.37	-2.6
147,067	-		HMPREF1078_RS15310	0.37	-2.5
147,084	+		HMPREF1078_RS15310	0.38	-0.8
147,084	+		HMPREF1078_RS15310	0.38	-2.9
147,122	+		HMPREF1078_RS15310	0.41	-2.2
147,144	+		HMPREF1078_RS15310	0.42	-2.0
147,151	+		HMPREF1078_RS15310	0.43	-2.3
147,151	+		HMPREF1078_RS15310	0.43	-1.3
147,152	-		HMPREF1078_RS15310	0.43	-0.3
147,166	-		HMPREF1078_RS15310	0.43	-1.2
147,254	+		HMPREF1078_RS15310	0.49	-1.8
147,254	+		HMPREF1078_RS15310	0.49	-3.2
147,307	-		HMPREF1078_RS15310	0.53	-1.3
147,318	+		HMPREF1078_RS15310	0.53	-3.2
147,318	+		HMPREF1078_RS15310	0.53	-2.5
147,318	+		HMPREF1078_RS15310	0.53	-3.8
147,319	-		HMPREF1078_RS15310	0.54	-0.5
147,319	-		HMPREF1078_RS15310	0.54	-0.5
147,319	-		HMPREF1078_RS15310	0.54	-1.5
147,319	-		HMPREF1078_RS15310	0.54	-0.0
147,319	-		HMPREF1078_RS15310	0.54	-1.0
147,319	-		HMPREF1078_RS15310	0.54	-2.7
147,324	-		HMPREF1078_RS15310	0.54	-1.3
147,324	-		HMPREF1078_RS15310	0.54	-1.0
147,433	+		HMPREF1078_RS15310	0.61	-1.7
147,436	+		HMPREF1078_RS15310	0.61	-3.9
147,436	+		HMPREF1078_RS15310	0.61	-3.2
147,437	-		HMPREF1078_RS15310	0.61	-1.9
147,437	-		HMPREF1078_RS15310	0.61	-1.5
147,440	+		HMPREF1078_RS15310	0.61	-3.3
147,441	-		HMPREF1078_RS15310	0.61	+0.2
147,441	-		HMPREF1078_RS15310	0.61	-2.4
147,441	-		HMPREF1078_RS15310	0.61	-3.1
147,450	+		HMPREF1078_RS15310	0.62	-3.4
147,450	+		HMPREF1078_RS15310	0.62	-4.3
147,490	+		HMPREF1078_RS15310	0.65	-1.4
147,490	+		HMPREF1078_RS15310	0.65	-3.9
147,529	+		HMPREF1078_RS15310	0.67	-0.7
147,530	-		HMPREF1078_RS15310	0.67	-2.2
147,544	-		HMPREF1078_RS15310	0.68	-1.0
147,554	+		HMPREF1078_RS15310	0.69	-3.8
147,555	-		HMPREF1078_RS15310	0.69	-3.4
147,574	-		HMPREF1078_RS15310	0.70	-3.5
147,589	+		HMPREF1078_RS15310	0.71	-4.4
147,589	+		HMPREF1078_RS15310	0.71	-2.2
147,590	-		HMPREF1078_RS15310	0.71	-1.9
147,590	-		HMPREF1078_RS15310	0.71	-2.6
147,590	-		HMPREF1078_RS15310	0.71	-2.9
147,596	+		HMPREF1078_RS15310	0.72	-3.5
147,596	+		HMPREF1078_RS15310	0.72	-1.9
147,597	-		HMPREF1078_RS15310	0.72	-3.9
147,625	+		HMPREF1078_RS15310	0.74	-2.6
147,626	-		HMPREF1078_RS15310	0.74	-2.0
147,642	+		HMPREF1078_RS15310	0.75	-2.3
147,643	-		HMPREF1078_RS15310	0.75	-1.8
147,643	-		HMPREF1078_RS15310	0.75	-2.8
147,643	-		HMPREF1078_RS15310	0.75	-3.5
147,657	+		HMPREF1078_RS15310	0.76	-1.7
147,657	+		HMPREF1078_RS15310	0.76	-2.7
147,657	+		HMPREF1078_RS15310	0.76	-2.1
147,657	+		HMPREF1078_RS15310	0.76	+1.3
147,658	-		HMPREF1078_RS15310	0.76	-2.1
147,678	+		HMPREF1078_RS15310	0.77	-2.8
147,720	-		HMPREF1078_RS15310	0.80	-2.1
147,734	-		HMPREF1078_RS15310	0.81	-0.6
147,769	+		HMPREF1078_RS15310	0.83	-2.3
147,770	-		HMPREF1078_RS15310	0.83	-1.7
147,824	+		HMPREF1078_RS15310	0.87	-1.6
147,831	+		HMPREF1078_RS15310	0.87	-1.5
147,832	-		HMPREF1078_RS15310	0.87	-1.9
147,832	-		HMPREF1078_RS15310	0.87	-2.6
147,832	-		HMPREF1078_RS15310	0.87	-3.0
147,864	+		HMPREF1078_RS15310	0.89	-1.5
147,883	+				-3.2
147,890	+				-2.3
147,891	-				-2.3
147,891	-				-3.2
147,899	+				-2.0
147,900	-				-2.4
147,958	+				-0.9
147,959	-				-0.8
147,959	-				-0.0
147,959	-				-2.0
148,000	+				-1.5
148,000	+				-1.5
148,000	+				-2.1
148,001	-				-0.9
148,001	-				-3.2
148,001	-				-2.6
148,002	+				-1.8
148,002	+				+0.7
148,002	+				-2.5
148,028	+				-3.1
148,034	+				-2.7
148,035	-				-2.0
148,042	+				-1.6
148,043	-				+0.5
148,092	+				-1.5
148,114	+				-4.0
148,163	-		HMPREF1078_RS15315	0.11	-1.1
148,230	-		HMPREF1078_RS15315	0.17	-2.8
148,234	+		HMPREF1078_RS15315	0.17	-1.8
148,234	+		HMPREF1078_RS15315	0.17	-0.8
148,234	+		HMPREF1078_RS15315	0.17	-3.5
148,234	+		HMPREF1078_RS15315	0.17	-0.7
148,235	-		HMPREF1078_RS15315	0.17	-2.0
148,235	-		HMPREF1078_RS15315	0.17	-1.5
148,236	+		HMPREF1078_RS15315	0.18	-1.8
148,236	+		HMPREF1078_RS15315	0.18	-2.0
148,236	+		HMPREF1078_RS15315	0.18	-1.5
148,236	+		HMPREF1078_RS15315	0.18	-1.9
148,236	+		HMPREF1078_RS15315	0.18	-3.9
148,237	-		HMPREF1078_RS15315	0.18	-2.1
148,237	-		HMPREF1078_RS15315	0.18	-1.3
148,238	+		HMPREF1078_RS15315	0.18	-1.8
148,238	+		HMPREF1078_RS15315	0.18	-0.3
148,238	+		HMPREF1078_RS15315	0.18	-0.3
148,241	-		HMPREF1078_RS15315	0.18	-2.4
148,287	-		HMPREF1078_RS15315	0.22	-3.1
148,313	+		HMPREF1078_RS15315	0.25	-2.1
148,321	+		HMPREF1078_RS15315	0.25	-2.6
148,321	+		HMPREF1078_RS15315	0.25	-2.3
148,321	+		HMPREF1078_RS15315	0.25	-1.9
148,321	+		HMPREF1078_RS15315	0.25	-2.1
148,322	+		HMPREF1078_RS15315	0.26	-1.4
148,324	-		HMPREF1078_RS15315	0.26	-0.6
148,324	-		HMPREF1078_RS15315	0.26	-1.3
148,355	+		HMPREF1078_RS15315	0.29	-2.1
148,356	-		HMPREF1078_RS15315	0.29	-2.1
148,356	-		HMPREF1078_RS15315	0.29	-2.1
148,388	+		HMPREF1078_RS15315	0.32	-1.1
148,388	+		HMPREF1078_RS15315	0.32	-1.7
148,389	-		HMPREF1078_RS15315	0.32	-1.7
148,397	-		HMPREF1078_RS15315	0.33	-1.5
148,415	+		HMPREF1078_RS15315	0.34	-4.3
148,415	+		HMPREF1078_RS15315	0.34	-3.0
148,416	-		HMPREF1078_RS15315	0.34	-2.0
148,420	+		HMPREF1078_RS15315	0.35	-2.5
148,420	+		HMPREF1078_RS15315	0.35	-3.5
148,539	-		HMPREF1078_RS15315	0.46	-2.0
148,558	+		HMPREF1078_RS15315	0.48	-3.7
148,559	-		HMPREF1078_RS15315	0.48	+2.3
148,571	-		HMPREF1078_RS15315	0.49	-1.6
148,591	-		HMPREF1078_RS15315	0.51	-3.2
148,591	-		HMPREF1078_RS15315	0.51	-2.8
148,627	+		HMPREF1078_RS15315	0.54	-3.0
148,627	+		HMPREF1078_RS15315	0.54	-2.6
148,732	+		HMPREF1078_RS15315	0.64	-3.3
148,732	+		HMPREF1078_RS15315	0.64	-2.9
148,733	-		HMPREF1078_RS15315	0.64	-2.8
148,782	+		HMPREF1078_RS15315	0.69	-2.2
148,783	-		HMPREF1078_RS15315	0.69	-2.3
148,804	+		HMPREF1078_RS15315	0.71	-3.2
148,823	-		HMPREF1078_RS15315	0.72	-2.2
148,823	-		HMPREF1078_RS15315	0.72	-1.7
148,869	-		HMPREF1078_RS15315	0.77	-3.8
148,869	-		HMPREF1078_RS15315	0.77	-2.2
148,869	-		HMPREF1078_RS15315	0.77	-0.7
148,878	+		HMPREF1078_RS15315	0.78	-2.8
148,885	+		HMPREF1078_RS15315	0.78	-3.4
148,885	+		HMPREF1078_RS15315	0.78	-2.8
148,885	+		HMPREF1078_RS15315	0.78	-2.7
148,885	+		HMPREF1078_RS15315	0.78	-2.7
148,885	+		HMPREF1078_RS15315	0.78	-3.6
148,886	-		HMPREF1078_RS15315	0.78	-2.1
148,886	-		HMPREF1078_RS15315	0.78	-2.7
148,886	-		HMPREF1078_RS15315	0.78	-1.8
148,886	-		HMPREF1078_RS15315	0.78	-1.2
148,886	-		HMPREF1078_RS15315	0.78	-3.4
148,886	-		HMPREF1078_RS15315	0.78	-2.9
148,917	+		HMPREF1078_RS15315	0.81	-3.5
148,930	-		HMPREF1078_RS15315	0.82	-3.0
148,933	+		HMPREF1078_RS15315	0.83	-0.7
148,935	+		HMPREF1078_RS15315	0.83	+1.3
148,936	-		HMPREF1078_RS15315	0.83	-2.6
148,939	-		HMPREF1078_RS15315	0.83	-2.6
148,958	+		HMPREF1078_RS15315	0.85	-3.6
148,958	+		HMPREF1078_RS15315	0.85	-3.3
148,966	+		HMPREF1078_RS15315	0.86	-2.4
148,996	+		HMPREF1078_RS15315	0.89	-2.4
149,007	+		HMPREF1078_RS15315	0.90	-1.5
149,007	+		HMPREF1078_RS15315	0.90	-3.2
149,008	-		HMPREF1078_RS15315	0.90	-2.2
149,012	+				+0.3
149,013	-				-1.8
149,013	-				-1.4
149,015	-				-2.6