Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS15285

Experiment: D-Mannose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose 10 mg/mL (C)
140,977	+		HMPREF1078_RS15275	0.67	-0.4
140,977	+		HMPREF1078_RS15275	0.67	-2.5
140,977	+		HMPREF1078_RS15275	0.67	-1.3
141,180	-				-2.2
141,180	-				-1.2
141,184	-				-2.2
141,184	-				-2.6
141,211	-				+0.3
141,225	-				-1.5
141,225	-				-1.8
141,225	-				-0.8
141,225	-				+0.4
141,227	+				-0.5
141,229	+				-2.5
141,231	+				-3.8
141,232	-				-2.8
141,243	+				+0.1
141,244	-				-2.7
141,410	-		HMPREF1078_RS15280	0.26	-2.6
141,458	+		HMPREF1078_RS15280	0.33	-2.2
141,459	-		HMPREF1078_RS15280	0.33	-2.5
141,551	+		HMPREF1078_RS15280	0.45	-2.5
141,552	-		HMPREF1078_RS15280	0.45	-0.7
141,583	+		HMPREF1078_RS15280	0.49	-2.5
141,886	+		HMPREF1078_RS15280	0.88	-1.6
141,934	+				-1.0
141,947	+				-4.3
141,947	+				-3.2
141,948	-				-1.8
141,948	-				-1.7
141,948	-				-3.2
141,948	-				-1.8
141,955	+				-1.4
141,956	-				-3.3
141,962	+				-3.9
141,963	-				-0.9
142,008	-				-3.0
142,008	-				-1.8
142,021	+				-1.9
142,033	-		HMPREF1078_RS15285	0.11	-3.7
142,167	-		HMPREF1078_RS15285	0.31	-3.7
142,382	-		HMPREF1078_RS15285	0.63	-2.2
142,417	+		HMPREF1078_RS15285	0.68	-3.0
142,417	+		HMPREF1078_RS15285	0.68	-2.8
142,418	-		HMPREF1078_RS15285	0.69	-2.4
142,418	-		HMPREF1078_RS15285	0.69	-2.9
142,418	-		HMPREF1078_RS15285	0.69	-2.9
142,418	-		HMPREF1078_RS15285	0.69	-2.0
142,423	+		HMPREF1078_RS15285	0.69	-1.1
142,423	+		HMPREF1078_RS15285	0.69	-1.6
142,424	-		HMPREF1078_RS15285	0.70	+0.2
142,424	-		HMPREF1078_RS15285	0.70	-3.0
142,614	+				-0.2
142,615	-				-2.6
142,617	-				-2.4
142,617	-				-2.6
142,619	-				-3.7
142,619	-				-1.2
142,619	-				-2.4
142,619	-				-1.7
142,619	-				-1.0
142,651	+				-2.6
142,666	-				-0.5
142,668	-				+0.2
142,685	+				-0.4
142,685	+				-3.7
142,685	+				-0.3
142,685	+				-2.0
142,686	-				+0.7
142,700	+				-2.1
142,837	-		HMPREF1078_RS15290	0.13	-2.4
142,837	-		HMPREF1078_RS15290	0.13	-2.0
142,860	-		HMPREF1078_RS15290	0.15	-1.0
142,888	-		HMPREF1078_RS15290	0.17	-2.1
143,048	+		HMPREF1078_RS15290	0.31	-1.6
143,060	-		HMPREF1078_RS15290	0.33	-1.9
143,089	+		HMPREF1078_RS15290	0.35	-1.8
143,089	+		HMPREF1078_RS15290	0.35	-2.6
143,139	+		HMPREF1078_RS15290	0.39	-2.0
143,141	+		HMPREF1078_RS15290	0.40	-2.8
143,218	-		HMPREF1078_RS15290	0.46	-0.0
143,222	-		HMPREF1078_RS15290	0.47	-1.8
143,230	-		HMPREF1078_RS15290	0.47	-2.7
143,230	-		HMPREF1078_RS15290	0.47	-0.8
143,239	+		HMPREF1078_RS15290	0.48	-2.8
143,256	+		HMPREF1078_RS15290	0.50	-1.9
143,257	-		HMPREF1078_RS15290	0.50	-1.4
143,301	-		HMPREF1078_RS15290	0.54	-2.3
143,316	-		HMPREF1078_RS15290	0.55	-3.4
143,318	+		HMPREF1078_RS15290	0.55	-1.9
143,318	+		HMPREF1078_RS15290	0.55	-2.9
143,330	-		HMPREF1078_RS15290	0.56	-1.6
143,331	+		HMPREF1078_RS15290	0.56	-3.8
143,332	-		HMPREF1078_RS15290	0.56	-1.5
143,332	-		HMPREF1078_RS15290	0.56	-2.5
143,332	-		HMPREF1078_RS15290	0.56	-2.6
143,332	-		HMPREF1078_RS15290	0.56	-2.8
143,337	+		HMPREF1078_RS15290	0.57	-4.2
143,338	-		HMPREF1078_RS15290	0.57	-1.8
143,341	+		HMPREF1078_RS15290	0.57	-2.5
143,353	-		HMPREF1078_RS15290	0.58	-1.4
143,430	-		HMPREF1078_RS15290	0.65	-2.6
143,430	-		HMPREF1078_RS15290	0.65	-1.8
143,430	-		HMPREF1078_RS15290	0.65	-2.6
143,578	+		HMPREF1078_RS15290	0.78	-2.7