Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14625 and HMPREF1078_RS14630 are separated by 15 nucleotides HMPREF1078_RS14630 and HMPREF1078_RS14635 are separated by 1 nucleotides HMPREF1078_RS14635 and HMPREF1078_RS14640 overlap by 56 nucleotides HMPREF1078_RS14640 and HMPREF1078_RS14645 are separated by 11 nucleotides HMPREF1078_RS14645 and HMPREF1078_RS14650 are separated by 139 nucleotides
HMPREF1078_RS14625: HMPREF1078_RS14625 - DUF721 domain-containing protein, at 420,007 to 420,300
_RS14625
HMPREF1078_RS14630: HMPREF1078_RS14630 - YkvA family protein, at 420,316 to 420,711
_RS14630
HMPREF1078_RS14635: HMPREF1078_RS14635 - 5-formyltetrahydrofolate cyclo-ligase, at 420,713 to 421,228
_RS14635
HMPREF1078_RS14640: HMPREF1078_RS14640 - S41 family peptidase, at 421,173 to 422,906
_RS14640
HMPREF1078_RS14645: HMPREF1078_RS14645 - dCMP deaminase family protein, at 422,918 to 423,352
_RS14645
HMPREF1078_RS14650: HMPREF1078_RS14650 - M3 family metallopeptidase, at 423,492 to 425,582
_RS14650
Position (kb) 421
422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 420.287 kb on + strand at 420.288 kb on - strand at 420.288 kb on - strand at 420.291 kb on + strand at 420.315 kb on + strand at 420.382 kb on + strand, within HMPREF1078_RS14630 at 420.383 kb on - strand, within HMPREF1078_RS14630 at 420.383 kb on - strand, within HMPREF1078_RS14630 at 420.449 kb on + strand, within HMPREF1078_RS14630 at 420.449 kb on + strand, within HMPREF1078_RS14630 at 420.449 kb on + strand, within HMPREF1078_RS14630 at 420.449 kb on + strand, within HMPREF1078_RS14630 at 420.450 kb on - strand, within HMPREF1078_RS14630 at 420.450 kb on - strand, within HMPREF1078_RS14630 at 420.472 kb on + strand, within HMPREF1078_RS14630 at 420.473 kb on - strand, within HMPREF1078_RS14630 at 420.507 kb on + strand, within HMPREF1078_RS14630 at 420.507 kb on + strand, within HMPREF1078_RS14630 at 420.508 kb on - strand, within HMPREF1078_RS14630 at 420.508 kb on - strand, within HMPREF1078_RS14630 at 420.514 kb on + strand, within HMPREF1078_RS14630 at 420.515 kb on - strand, within HMPREF1078_RS14630 at 420.516 kb on + strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.522 kb on - strand, within HMPREF1078_RS14630 at 420.531 kb on - strand, within HMPREF1078_RS14630 at 420.541 kb on - strand, within HMPREF1078_RS14630 at 420.591 kb on + strand, within HMPREF1078_RS14630 at 420.592 kb on - strand, within HMPREF1078_RS14630 at 420.603 kb on - strand, within HMPREF1078_RS14630 at 420.603 kb on - strand, within HMPREF1078_RS14630 at 420.639 kb on + strand, within HMPREF1078_RS14630 at 420.639 kb on + strand, within HMPREF1078_RS14630 at 420.656 kb on + strand, within HMPREF1078_RS14630 at 420.676 kb on - strand at 420.676 kb on - strand at 420.676 kb on - strand at 420.703 kb on - strand at 420.719 kb on + strand at 420.735 kb on - strand at 420.736 kb on + strand at 420.737 kb on - strand at 420.737 kb on - strand at 420.737 kb on - strand at 420.785 kb on + strand, within HMPREF1078_RS14635 at 420.798 kb on + strand, within HMPREF1078_RS14635 at 420.875 kb on - strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.003 kb on - strand, within HMPREF1078_RS14635 at 421.034 kb on - strand, within HMPREF1078_RS14635 at 421.034 kb on - strand, within HMPREF1078_RS14635 at 421.046 kb on + strand, within HMPREF1078_RS14635 at 421.047 kb on - strand, within HMPREF1078_RS14635 at 421.047 kb on - strand, within HMPREF1078_RS14635 at 421.063 kb on - strand, within HMPREF1078_RS14635 at 421.113 kb on + strand, within HMPREF1078_RS14635 at 421.113 kb on + strand, within HMPREF1078_RS14635 at 421.114 kb on - strand, within HMPREF1078_RS14635 at 421.114 kb on - strand, within HMPREF1078_RS14635 at 421.114 kb on - strand, within HMPREF1078_RS14635 at 421.115 kb on + strand, within HMPREF1078_RS14635 at 421.115 kb on + strand, within HMPREF1078_RS14635 at 421.116 kb on - strand, within HMPREF1078_RS14635 at 421.116 kb on - strand, within HMPREF1078_RS14635 at 421.206 kb on + strand at 421.207 kb on - strand at 421.207 kb on - strand at 421.405 kb on + strand, within HMPREF1078_RS14640 at 421.406 kb on - strand, within HMPREF1078_RS14640 at 421.440 kb on + strand, within HMPREF1078_RS14640 at 421.487 kb on - strand, within HMPREF1078_RS14640 at 421.544 kb on - strand, within HMPREF1078_RS14640 at 421.600 kb on - strand, within HMPREF1078_RS14640 at 421.600 kb on - strand, within HMPREF1078_RS14640 at 421.600 kb on - strand, within HMPREF1078_RS14640 at 421.600 kb on - strand, within HMPREF1078_RS14640 at 421.793 kb on - strand, within HMPREF1078_RS14640 at 421.807 kb on + strand, within HMPREF1078_RS14640 at 421.845 kb on - strand, within HMPREF1078_RS14640 at 422.058 kb on - strand, within HMPREF1078_RS14640 at 422.073 kb on - strand, within HMPREF1078_RS14640 at 422.112 kb on + strand, within HMPREF1078_RS14640 at 422.211 kb on - strand, within HMPREF1078_RS14640 at 422.211 kb on - strand, within HMPREF1078_RS14640 at 422.281 kb on - strand, within HMPREF1078_RS14640 at 422.401 kb on - strand, within HMPREF1078_RS14640 at 422.657 kb on - strand, within HMPREF1078_RS14640 at 422.657 kb on - strand, within HMPREF1078_RS14640 at 422.751 kb on - strand at 422.789 kb on - strand at 422.793 kb on - strand at 422.881 kb on - strand at 423.371 kb on - strand at 423.371 kb on - strand at 423.376 kb on - strand at 423.382 kb on - strand at 423.384 kb on - strand at 423.401 kb on - strand at 423.401 kb on - strand at 423.405 kb on - strand at 423.407 kb on - strand at 423.407 kb on - strand at 423.425 kb on - strand at 423.453 kb on + strand at 423.469 kb on + strand at 423.469 kb on + strand at 423.731 kb on + strand, within HMPREF1078_RS14650 at 423.732 kb on - strand, within HMPREF1078_RS14650 at 423.732 kb on - strand, within HMPREF1078_RS14650 at 423.732 kb on - strand, within HMPREF1078_RS14650 at 423.732 kb on - strand, within HMPREF1078_RS14650 at 423.755 kb on - strand, within HMPREF1078_RS14650 at 423.854 kb on + strand, within HMPREF1078_RS14650 at 423.855 kb on - strand, within HMPREF1078_RS14650 at 423.855 kb on - strand, within HMPREF1078_RS14650 at 423.855 kb on - strand, within HMPREF1078_RS14650 at 423.900 kb on + strand, within HMPREF1078_RS14650 at 423.901 kb on - strand, within HMPREF1078_RS14650
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 420,287 + +0.1 420,288 - -0.3 420,288 - -0.0 420,291 + +0.0 420,315 + +0.3 420,382 + HMPREF1078_RS14630 0.17 -0.1 420,383 - HMPREF1078_RS14630 0.17 +0.6 420,383 - HMPREF1078_RS14630 0.17 +0.7 420,449 + HMPREF1078_RS14630 0.34 -1.3 420,449 + HMPREF1078_RS14630 0.34 +0.7 420,449 + HMPREF1078_RS14630 0.34 -0.8 420,449 + HMPREF1078_RS14630 0.34 -0.4 420,450 - HMPREF1078_RS14630 0.34 +0.4 420,450 - HMPREF1078_RS14630 0.34 -0.1 420,472 + HMPREF1078_RS14630 0.39 -2.7 420,473 - HMPREF1078_RS14630 0.40 +0.5 420,507 + HMPREF1078_RS14630 0.48 -0.8 420,507 + HMPREF1078_RS14630 0.48 -0.4 420,508 - HMPREF1078_RS14630 0.48 +0.2 420,508 - HMPREF1078_RS14630 0.48 +0.1 420,514 + HMPREF1078_RS14630 0.50 -0.1 420,515 - HMPREF1078_RS14630 0.50 -0.7 420,516 + HMPREF1078_RS14630 0.51 -0.4 420,517 - HMPREF1078_RS14630 0.51 -1.5 420,517 - HMPREF1078_RS14630 0.51 -0.1 420,517 - HMPREF1078_RS14630 0.51 +0.6 420,517 - HMPREF1078_RS14630 0.51 +1.7 420,517 - HMPREF1078_RS14630 0.51 +0.4 420,522 - HMPREF1078_RS14630 0.52 +1.6 420,531 - HMPREF1078_RS14630 0.54 -0.1 420,541 - HMPREF1078_RS14630 0.57 -0.9 420,591 + HMPREF1078_RS14630 0.69 -1.5 420,592 - HMPREF1078_RS14630 0.70 +0.9 420,603 - HMPREF1078_RS14630 0.72 -2.8 420,603 - HMPREF1078_RS14630 0.72 -0.6 420,639 + HMPREF1078_RS14630 0.82 -0.2 420,639 + HMPREF1078_RS14630 0.82 -0.1 420,656 + HMPREF1078_RS14630 0.86 +0.0 420,676 - -1.4 420,676 - -0.1 420,676 - +0.0 420,703 - -1.5 420,719 + -0.1 420,735 - -1.2 420,736 + -0.4 420,737 - -0.5 420,737 - -0.1 420,737 - +0.7 420,785 + HMPREF1078_RS14635 0.14 +0.4 420,798 + HMPREF1078_RS14635 0.16 -0.7 420,875 - HMPREF1078_RS14635 0.31 +0.4 421,002 + HMPREF1078_RS14635 0.56 +1.2 421,002 + HMPREF1078_RS14635 0.56 -1.5 421,002 + HMPREF1078_RS14635 0.56 -0.0 421,002 + HMPREF1078_RS14635 0.56 -1.1 421,002 + HMPREF1078_RS14635 0.56 -1.0 421,003 - HMPREF1078_RS14635 0.56 -0.9 421,034 - HMPREF1078_RS14635 0.62 -0.8 421,034 - HMPREF1078_RS14635 0.62 -0.2 421,046 + HMPREF1078_RS14635 0.65 -1.6 421,047 - HMPREF1078_RS14635 0.65 +0.2 421,047 - HMPREF1078_RS14635 0.65 +0.4 421,063 - HMPREF1078_RS14635 0.68 -0.4 421,113 + HMPREF1078_RS14635 0.78 +0.4 421,113 + HMPREF1078_RS14635 0.78 +0.3 421,114 - HMPREF1078_RS14635 0.78 -0.5 421,114 - HMPREF1078_RS14635 0.78 -0.2 421,114 - HMPREF1078_RS14635 0.78 -0.5 421,115 + HMPREF1078_RS14635 0.78 -0.4 421,115 + HMPREF1078_RS14635 0.78 -1.1 421,116 - HMPREF1078_RS14635 0.78 -2.1 421,116 - HMPREF1078_RS14635 0.78 -1.1 421,206 + +1.0 421,207 - -1.0 421,207 - -0.6 421,405 + HMPREF1078_RS14640 0.13 -0.5 421,406 - HMPREF1078_RS14640 0.13 -0.5 421,440 + HMPREF1078_RS14640 0.15 -1.3 421,487 - HMPREF1078_RS14640 0.18 -1.0 421,544 - HMPREF1078_RS14640 0.21 -0.5 421,600 - HMPREF1078_RS14640 0.25 -0.3 421,600 - HMPREF1078_RS14640 0.25 -0.7 421,600 - HMPREF1078_RS14640 0.25 -1.0 421,600 - HMPREF1078_RS14640 0.25 -1.8 421,793 - HMPREF1078_RS14640 0.36 +0.3 421,807 + HMPREF1078_RS14640 0.37 -0.9 421,845 - HMPREF1078_RS14640 0.39 +1.3 422,058 - HMPREF1078_RS14640 0.51 -0.7 422,073 - HMPREF1078_RS14640 0.52 -2.0 422,112 + HMPREF1078_RS14640 0.54 -1.0 422,211 - HMPREF1078_RS14640 0.60 +3.3 422,211 - HMPREF1078_RS14640 0.60 -0.9 422,281 - HMPREF1078_RS14640 0.64 +2.3 422,401 - HMPREF1078_RS14640 0.71 -0.0 422,657 - HMPREF1078_RS14640 0.86 +0.3 422,657 - HMPREF1078_RS14640 0.86 -0.5 422,751 - -0.3 422,789 - -0.7 422,793 - -0.0 422,881 - -0.7 423,371 - +0.1 423,371 - +0.0 423,376 - -0.0 423,382 - +0.5 423,384 - -3.4 423,401 - +0.6 423,401 - +1.7 423,405 - -1.0 423,407 - +0.2 423,407 - +0.1 423,425 - +1.6 423,453 + -0.0 423,469 + +0.6 423,469 + -0.5 423,731 + HMPREF1078_RS14650 0.11 -0.9 423,732 - HMPREF1078_RS14650 0.11 +0.4 423,732 - HMPREF1078_RS14650 0.11 -0.6 423,732 - HMPREF1078_RS14650 0.11 -0.4 423,732 - HMPREF1078_RS14650 0.11 -0.2 423,755 - HMPREF1078_RS14650 0.13 -0.3 423,854 + HMPREF1078_RS14650 0.17 -0.3 423,855 - HMPREF1078_RS14650 0.17 -0.3 423,855 - HMPREF1078_RS14650 0.17 +0.4 423,855 - HMPREF1078_RS14650 0.17 -0.2 423,900 + HMPREF1078_RS14650 0.20 -0.6 423,901 - HMPREF1078_RS14650 0.20 -0.3
Or see this region's nucleotide sequence