Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14565 and HMPREF1078_RS14570 are separated by 3 nucleotides HMPREF1078_RS14570 and HMPREF1078_RS14575 are separated by 2 nucleotides HMPREF1078_RS14575 and HMPREF1078_RS14580 are separated by 7 nucleotides HMPREF1078_RS14580 and HMPREF1078_RS14585 are separated by 177 nucleotides
HMPREF1078_RS14565: HMPREF1078_RS14565 - sigma-54 dependent transcriptional regulator, at 412,718 to 413,905
_RS14565
HMPREF1078_RS14570: HMPREF1078_RS14570 - LptE family protein, at 413,909 to 414,421
_RS14570
HMPREF1078_RS14575: HMPREF1078_RS14575 - hypothetical protein, at 414,424 to 415,191
_RS14575
HMPREF1078_RS14580: HMPREF1078_RS14580 - preprotein translocase subunit SecG, at 415,199 to 415,570
_RS14580
HMPREF1078_RS14585: HMPREF1078_RS14585 - DUF4491 family protein, at 415,748 to 416,059
_RS14585
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 413.728 kb on + strand, within HMPREF1078_RS14565 at 414.440 kb on + strand at 414.480 kb on + strand at 414.481 kb on - strand at 414.481 kb on - strand at 414.495 kb on - strand at 414.576 kb on - strand, within HMPREF1078_RS14575 at 414.576 kb on - strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.610 kb on + strand, within HMPREF1078_RS14575 at 414.611 kb on - strand, within HMPREF1078_RS14575 at 414.624 kb on + strand, within HMPREF1078_RS14575 at 414.624 kb on + strand, within HMPREF1078_RS14575 at 414.645 kb on - strand, within HMPREF1078_RS14575 at 414.806 kb on - strand, within HMPREF1078_RS14575 at 414.806 kb on - strand, within HMPREF1078_RS14575 at 414.806 kb on - strand, within HMPREF1078_RS14575 at 414.811 kb on + strand, within HMPREF1078_RS14575 at 414.811 kb on + strand, within HMPREF1078_RS14575 at 414.812 kb on - strand, within HMPREF1078_RS14575 at 414.903 kb on + strand, within HMPREF1078_RS14575 at 415.046 kb on + strand, within HMPREF1078_RS14575 at 415.047 kb on - strand, within HMPREF1078_RS14575 at 415.047 kb on - strand, within HMPREF1078_RS14575 at 415.053 kb on + strand, within HMPREF1078_RS14575 at 415.053 kb on + strand, within HMPREF1078_RS14575 at 415.057 kb on + strand, within HMPREF1078_RS14575 at 415.057 kb on + strand, within HMPREF1078_RS14575 at 415.058 kb on - strand, within HMPREF1078_RS14575 at 415.058 kb on - strand, within HMPREF1078_RS14575 at 415.075 kb on + strand, within HMPREF1078_RS14575 at 415.117 kb on + strand at 415.462 kb on + strand, within HMPREF1078_RS14580 at 415.568 kb on + strand at 415.568 kb on + strand at 415.572 kb on - strand at 415.591 kb on + strand at 415.592 kb on - strand at 415.669 kb on - strand at 415.669 kb on - strand at 415.674 kb on - strand at 415.686 kb on - strand at 415.689 kb on + strand at 415.689 kb on + strand at 415.689 kb on + strand at 415.699 kb on + strand at 415.699 kb on + strand at 415.700 kb on - strand at 415.721 kb on + strand at 415.722 kb on - strand at 415.722 kb on - strand at 415.722 kb on - strand at 415.733 kb on - strand at 415.733 kb on - strand at 415.733 kb on - strand at 415.748 kb on - strand at 415.748 kb on - strand at 415.779 kb on + strand at 415.780 kb on - strand, within HMPREF1078_RS14585 at 415.783 kb on + strand, within HMPREF1078_RS14585 at 415.783 kb on + strand, within HMPREF1078_RS14585 at 415.784 kb on - strand, within HMPREF1078_RS14585 at 415.784 kb on - strand, within HMPREF1078_RS14585 at 415.789 kb on + strand, within HMPREF1078_RS14585 at 415.934 kb on - strand, within HMPREF1078_RS14585 at 415.972 kb on - strand, within HMPREF1078_RS14585 at 416.035 kb on + strand at 416.035 kb on + strand at 416.036 kb on - strand at 416.092 kb on + strand at 416.093 kb on - strand at 416.183 kb on + strand at 416.190 kb on + strand at 416.190 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 413,728 + HMPREF1078_RS14565 0.85 -0.3 414,440 + -1.4 414,480 + -0.5 414,481 - -1.0 414,481 - -2.7 414,495 - -3.7 414,576 - HMPREF1078_RS14575 0.20 -0.5 414,576 - HMPREF1078_RS14575 0.20 -2.3 414,610 + HMPREF1078_RS14575 0.24 -1.6 414,610 + HMPREF1078_RS14575 0.24 -1.5 414,610 + HMPREF1078_RS14575 0.24 -1.3 414,610 + HMPREF1078_RS14575 0.24 -1.8 414,610 + HMPREF1078_RS14575 0.24 -1.9 414,610 + HMPREF1078_RS14575 0.24 -0.5 414,610 + HMPREF1078_RS14575 0.24 -0.6 414,610 + HMPREF1078_RS14575 0.24 -3.4 414,610 + HMPREF1078_RS14575 0.24 -1.3 414,611 - HMPREF1078_RS14575 0.24 -2.8 414,624 + HMPREF1078_RS14575 0.26 -0.2 414,624 + HMPREF1078_RS14575 0.26 -1.3 414,645 - HMPREF1078_RS14575 0.29 -0.8 414,806 - HMPREF1078_RS14575 0.50 -1.1 414,806 - HMPREF1078_RS14575 0.50 +0.3 414,806 - HMPREF1078_RS14575 0.50 -1.6 414,811 + HMPREF1078_RS14575 0.50 -1.2 414,811 + HMPREF1078_RS14575 0.50 -0.7 414,812 - HMPREF1078_RS14575 0.51 -2.5 414,903 + HMPREF1078_RS14575 0.62 -2.9 415,046 + HMPREF1078_RS14575 0.81 -2.5 415,047 - HMPREF1078_RS14575 0.81 -2.5 415,047 - HMPREF1078_RS14575 0.81 -0.5 415,053 + HMPREF1078_RS14575 0.82 -2.6 415,053 + HMPREF1078_RS14575 0.82 -0.1 415,057 + HMPREF1078_RS14575 0.82 -2.3 415,057 + HMPREF1078_RS14575 0.82 -2.2 415,058 - HMPREF1078_RS14575 0.83 -2.5 415,058 - HMPREF1078_RS14575 0.83 -1.1 415,075 + HMPREF1078_RS14575 0.85 -1.4 415,117 + -0.0 415,462 + HMPREF1078_RS14580 0.71 +0.5 415,568 + +0.8 415,568 + -0.0 415,572 - +1.5 415,591 + -2.4 415,592 - -0.3 415,669 - -0.1 415,669 - -1.4 415,674 - -1.5 415,686 - -1.6 415,689 + -0.8 415,689 + +2.0 415,689 + -0.3 415,699 + +0.1 415,699 + +0.0 415,700 - -0.0 415,721 + +0.5 415,722 - -0.7 415,722 - +0.0 415,722 - -0.7 415,733 - -1.1 415,733 - +0.2 415,733 - -1.1 415,748 - +0.3 415,748 - -0.9 415,779 + +1.1 415,780 - HMPREF1078_RS14585 0.10 +0.8 415,783 + HMPREF1078_RS14585 0.11 +0.7 415,783 + HMPREF1078_RS14585 0.11 +0.2 415,784 - HMPREF1078_RS14585 0.12 +0.2 415,784 - HMPREF1078_RS14585 0.12 +0.3 415,789 + HMPREF1078_RS14585 0.13 -0.0 415,934 - HMPREF1078_RS14585 0.60 -1.1 415,972 - HMPREF1078_RS14585 0.72 +0.7 416,035 + -1.3 416,035 + -1.1 416,036 - +1.5 416,092 + +1.2 416,093 - -1.4 416,183 + -2.4 416,190 + -0.8 416,190 + +1.0
Or see this region's nucleotide sequence