Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14190 and HMPREF1078_RS14195 overlap by 1 nucleotides HMPREF1078_RS14195 and HMPREF1078_RS14200 are separated by 87 nucleotides HMPREF1078_RS14200 and HMPREF1078_RS14205 are separated by 21 nucleotides HMPREF1078_RS14205 and HMPREF1078_RS14210 are separated by 11 nucleotides
HMPREF1078_RS14190: HMPREF1078_RS14190 - hypothetical protein, at 310,825 to 311,400
_RS14190
HMPREF1078_RS14195: HMPREF1078_RS14195 - 4'-phosphopantetheinyl transferase superfamily protein, at 311,400 to 312,017
_RS14195
HMPREF1078_RS14200: HMPREF1078_RS14200 - shikimate dehydrogenase, at 312,105 to 312,845
_RS14200
HMPREF1078_RS14205: HMPREF1078_RS14205 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 312,867 to 313,634
_RS14205
HMPREF1078_RS14210: HMPREF1078_RS14210 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 313,646 to 314,593
_RS14210
Position (kb) 312
313 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 311.256 kb on + strand, within HMPREF1078_RS14190 at 311.299 kb on + strand, within HMPREF1078_RS14190 at 311.302 kb on + strand, within HMPREF1078_RS14190 at 311.302 kb on + strand, within HMPREF1078_RS14190 at 311.302 kb on + strand, within HMPREF1078_RS14190 at 311.366 kb on + strand at 311.398 kb on + strand at 312.039 kb on - strand at 312.039 kb on - strand at 312.040 kb on + strand at 312.040 kb on + strand at 312.041 kb on - strand at 312.041 kb on - strand at 312.041 kb on - strand at 312.041 kb on - strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.045 kb on - strand at 312.056 kb on + strand at 312.062 kb on + strand at 312.062 kb on + strand at 312.063 kb on - strand at 312.071 kb on + strand at 312.072 kb on - strand at 312.072 kb on - strand at 312.077 kb on + strand at 312.100 kb on - strand at 312.100 kb on - strand at 312.106 kb on + strand at 312.107 kb on - strand at 312.142 kb on - strand at 312.224 kb on - strand, within HMPREF1078_RS14200 at 312.224 kb on - strand, within HMPREF1078_RS14200 at 312.317 kb on + strand, within HMPREF1078_RS14200 at 312.334 kb on + strand, within HMPREF1078_RS14200 at 312.430 kb on - strand, within HMPREF1078_RS14200 at 312.658 kb on + strand, within HMPREF1078_RS14200 at 312.706 kb on - strand, within HMPREF1078_RS14200 at 312.790 kb on + strand at 312.826 kb on - strand at 312.826 kb on - strand at 312.828 kb on + strand at 312.869 kb on - strand at 312.869 kb on - strand at 312.869 kb on - strand at 312.869 kb on - strand at 312.870 kb on + strand at 312.871 kb on - strand at 312.871 kb on - strand at 312.964 kb on - strand, within HMPREF1078_RS14205 at 313.034 kb on - strand, within HMPREF1078_RS14205 at 313.041 kb on - strand, within HMPREF1078_RS14205 at 313.191 kb on - strand, within HMPREF1078_RS14205 at 313.191 kb on - strand, within HMPREF1078_RS14205 at 313.200 kb on + strand, within HMPREF1078_RS14205 at 313.495 kb on - strand, within HMPREF1078_RS14205 at 313.538 kb on - strand, within HMPREF1078_RS14205 at 313.538 kb on - strand, within HMPREF1078_RS14205 at 313.538 kb on - strand, within HMPREF1078_RS14205 at 313.625 kb on - strand at 313.740 kb on + strand at 313.752 kb on + strand, within HMPREF1078_RS14210 at 313.753 kb on - strand, within HMPREF1078_RS14210 at 313.753 kb on - strand, within HMPREF1078_RS14210 at 313.773 kb on - strand, within HMPREF1078_RS14210
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 311,256 + HMPREF1078_RS14190 0.75 -0.3 311,299 + HMPREF1078_RS14190 0.82 -1.4 311,302 + HMPREF1078_RS14190 0.83 -1.0 311,302 + HMPREF1078_RS14190 0.83 -2.5 311,302 + HMPREF1078_RS14190 0.83 +0.4 311,366 + -1.2 311,398 + -0.3 312,039 - +0.2 312,039 - -0.7 312,040 + -0.6 312,040 + +1.0 312,041 - -0.7 312,041 - +0.0 312,041 - -1.3 312,041 - -1.3 312,042 + -0.2 312,042 + +0.1 312,042 + +0.4 312,042 + +0.0 312,042 + -0.4 312,042 + +0.6 312,043 - -0.6 312,043 - -1.7 312,043 - -0.5 312,043 - -0.6 312,043 - -1.0 312,043 - -1.3 312,043 - +1.4 312,043 - +1.0 312,045 - -0.7 312,056 + +1.6 312,062 + +0.9 312,062 + +0.7 312,063 - -0.3 312,071 + +1.2 312,072 - -0.1 312,072 - +0.7 312,077 + +0.4 312,100 - -0.9 312,100 - -1.4 312,106 + -1.0 312,107 - +1.1 312,142 - -2.8 312,224 - HMPREF1078_RS14200 0.16 -2.7 312,224 - HMPREF1078_RS14200 0.16 -3.6 312,317 + HMPREF1078_RS14200 0.29 -3.3 312,334 + HMPREF1078_RS14200 0.31 -1.4 312,430 - HMPREF1078_RS14200 0.44 -2.4 312,658 + HMPREF1078_RS14200 0.75 -1.4 312,706 - HMPREF1078_RS14200 0.81 -2.8 312,790 + -0.9 312,826 - -4.9 312,826 - -1.9 312,828 + -4.1 312,869 - +0.3 312,869 - +0.3 312,869 - -1.2 312,869 - +0.2 312,870 + -0.5 312,871 - -0.8 312,871 - -0.2 312,964 - HMPREF1078_RS14205 0.13 +0.4 313,034 - HMPREF1078_RS14205 0.22 +0.8 313,041 - HMPREF1078_RS14205 0.23 -0.9 313,191 - HMPREF1078_RS14205 0.42 +3.9 313,191 - HMPREF1078_RS14205 0.42 -1.0 313,200 + HMPREF1078_RS14205 0.43 -0.7 313,495 - HMPREF1078_RS14205 0.82 -0.2 313,538 - HMPREF1078_RS14205 0.87 +1.0 313,538 - HMPREF1078_RS14205 0.87 -0.8 313,538 - HMPREF1078_RS14205 0.87 -0.9 313,625 - -1.0 313,740 + -0.7 313,752 + HMPREF1078_RS14210 0.11 -0.9 313,753 - HMPREF1078_RS14210 0.11 -1.7 313,753 - HMPREF1078_RS14210 0.11 -0.9 313,773 - HMPREF1078_RS14210 0.13 -2.8
Or see this region's nucleotide sequence