Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13545 and HMPREF1078_RS13550 are separated by 176 nucleotides HMPREF1078_RS13550 and HMPREF1078_RS13555 are separated by 64 nucleotides HMPREF1078_RS13555 and HMPREF1078_RS13560 are separated by 5 nucleotides
HMPREF1078_RS13545: HMPREF1078_RS13545 - diaminopimelate decarboxylase, at 155,616 to 156,776
_RS13545
HMPREF1078_RS13550: HMPREF1078_RS13550 - aspartate kinase, at 156,953 to 158,272
_RS13550
HMPREF1078_RS13555: HMPREF1078_RS13555 - ATP-binding cassette domain-containing protein, at 158,337 to 159,014
_RS13555
HMPREF1078_RS13560: HMPREF1078_RS13560 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 159,020 to 159,616
_RS13560
Position (kb) 156
157
158
159 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 156.012 kb on + strand, within HMPREF1078_RS13545 at 156.013 kb on - strand, within HMPREF1078_RS13545 at 156.013 kb on - strand, within HMPREF1078_RS13545 at 156.120 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.189 kb on - strand, within HMPREF1078_RS13545 at 156.189 kb on - strand, within HMPREF1078_RS13545 at 156.195 kb on - strand, within HMPREF1078_RS13545 at 156.195 kb on - strand, within HMPREF1078_RS13545 at 156.195 kb on - strand, within HMPREF1078_RS13545 at 156.236 kb on + strand, within HMPREF1078_RS13545 at 156.236 kb on + strand, within HMPREF1078_RS13545 at 156.262 kb on - strand, within HMPREF1078_RS13545 at 156.262 kb on - strand, within HMPREF1078_RS13545 at 156.335 kb on + strand, within HMPREF1078_RS13545 at 156.336 kb on - strand, within HMPREF1078_RS13545 at 156.336 kb on - strand, within HMPREF1078_RS13545 at 156.336 kb on - strand, within HMPREF1078_RS13545 at 156.346 kb on - strand, within HMPREF1078_RS13545 at 156.359 kb on + strand, within HMPREF1078_RS13545 at 156.360 kb on - strand, within HMPREF1078_RS13545 at 156.360 kb on - strand, within HMPREF1078_RS13545 at 156.436 kb on - strand, within HMPREF1078_RS13545 at 156.436 kb on - strand, within HMPREF1078_RS13545 at 156.586 kb on + strand, within HMPREF1078_RS13545 at 156.587 kb on - strand, within HMPREF1078_RS13545 at 156.596 kb on + strand, within HMPREF1078_RS13545 at 156.600 kb on - strand, within HMPREF1078_RS13545 at 156.600 kb on - strand, within HMPREF1078_RS13545 at 156.637 kb on + strand, within HMPREF1078_RS13545 at 156.638 kb on - strand, within HMPREF1078_RS13545 at 156.638 kb on - strand, within HMPREF1078_RS13545 at 156.655 kb on + strand, within HMPREF1078_RS13545 at 156.680 kb on + strand at 156.705 kb on + strand at 156.705 kb on + strand at 156.706 kb on - strand at 156.708 kb on - strand at 156.713 kb on - strand at 156.768 kb on + strand at 156.769 kb on - strand at 156.771 kb on + strand at 156.811 kb on - strand at 156.812 kb on + strand at 156.813 kb on - strand at 156.813 kb on - strand at 156.813 kb on - strand at 156.816 kb on + strand at 156.816 kb on + strand at 156.817 kb on - strand at 156.832 kb on - strand at 156.843 kb on + strand at 156.844 kb on - strand at 156.847 kb on + strand at 156.847 kb on + strand at 156.922 kb on - strand at 156.954 kb on + strand at 156.962 kb on - strand at 156.972 kb on - strand at 156.983 kb on + strand at 157.038 kb on + strand at 157.039 kb on - strand at 157.039 kb on - strand at 157.053 kb on + strand at 157.053 kb on + strand at 157.096 kb on + strand, within HMPREF1078_RS13550 at 157.096 kb on + strand, within HMPREF1078_RS13550 at 157.096 kb on + strand, within HMPREF1078_RS13550 at 157.118 kb on - strand, within HMPREF1078_RS13550 at 157.137 kb on - strand, within HMPREF1078_RS13550 at 157.147 kb on + strand, within HMPREF1078_RS13550 at 157.156 kb on + strand, within HMPREF1078_RS13550 at 157.156 kb on + strand, within HMPREF1078_RS13550 at 157.157 kb on - strand, within HMPREF1078_RS13550 at 157.247 kb on + strand, within HMPREF1078_RS13550 at 157.336 kb on + strand, within HMPREF1078_RS13550 at 157.337 kb on - strand, within HMPREF1078_RS13550 at 157.337 kb on - strand, within HMPREF1078_RS13550 at 157.337 kb on - strand, within HMPREF1078_RS13550 at 157.366 kb on + strand, within HMPREF1078_RS13550 at 157.472 kb on - strand, within HMPREF1078_RS13550 at 157.533 kb on - strand, within HMPREF1078_RS13550 at 157.533 kb on - strand, within HMPREF1078_RS13550 at 157.616 kb on + strand, within HMPREF1078_RS13550 at 157.629 kb on - strand, within HMPREF1078_RS13550 at 157.629 kb on - strand, within HMPREF1078_RS13550 at 157.732 kb on + strand, within HMPREF1078_RS13550 at 157.734 kb on + strand, within HMPREF1078_RS13550 at 157.735 kb on - strand, within HMPREF1078_RS13550 at 157.776 kb on - strand, within HMPREF1078_RS13550 at 157.787 kb on - strand, within HMPREF1078_RS13550 at 157.798 kb on + strand, within HMPREF1078_RS13550 at 157.798 kb on + strand, within HMPREF1078_RS13550 at 157.840 kb on + strand, within HMPREF1078_RS13550 at 157.840 kb on + strand, within HMPREF1078_RS13550 at 157.841 kb on - strand, within HMPREF1078_RS13550 at 157.842 kb on + strand, within HMPREF1078_RS13550 at 157.842 kb on + strand, within HMPREF1078_RS13550 at 157.842 kb on + strand, within HMPREF1078_RS13550 at 157.842 kb on + strand, within HMPREF1078_RS13550 at 157.843 kb on - strand, within HMPREF1078_RS13550 at 157.890 kb on + strand, within HMPREF1078_RS13550 at 157.890 kb on + strand, within HMPREF1078_RS13550 at 157.890 kb on + strand, within HMPREF1078_RS13550 at 157.891 kb on - strand, within HMPREF1078_RS13550 at 157.891 kb on - strand, within HMPREF1078_RS13550 at 158.004 kb on - strand, within HMPREF1078_RS13550 at 158.004 kb on - strand, within HMPREF1078_RS13550 at 158.027 kb on - strand, within HMPREF1078_RS13550 at 158.027 kb on - strand, within HMPREF1078_RS13550 at 158.027 kb on - strand, within HMPREF1078_RS13550 at 158.027 kb on - strand, within HMPREF1078_RS13550 at 158.028 kb on + strand, within HMPREF1078_RS13550 at 158.029 kb on - strand, within HMPREF1078_RS13550 at 158.029 kb on - strand, within HMPREF1078_RS13550 at 158.029 kb on - strand, within HMPREF1078_RS13550 at 158.044 kb on - strand, within HMPREF1078_RS13550 at 158.065 kb on - strand, within HMPREF1078_RS13550 at 158.067 kb on + strand, within HMPREF1078_RS13550 at 158.068 kb on - strand, within HMPREF1078_RS13550 at 158.084 kb on - strand, within HMPREF1078_RS13550 at 158.084 kb on - strand, within HMPREF1078_RS13550 at 158.180 kb on + strand at 158.181 kb on - strand at 158.181 kb on - strand at 158.188 kb on + strand at 158.189 kb on - strand at 158.189 kb on - strand at 158.189 kb on - strand at 158.189 kb on - strand at 158.281 kb on - strand at 158.284 kb on - strand at 158.284 kb on - strand at 158.355 kb on + strand at 158.377 kb on - strand at 158.392 kb on + strand at 158.392 kb on + strand at 158.396 kb on + strand at 158.396 kb on + strand at 158.397 kb on - strand at 158.397 kb on - strand at 158.397 kb on - strand at 158.411 kb on - strand, within HMPREF1078_RS13555 at 158.460 kb on + strand, within HMPREF1078_RS13555 at 158.469 kb on + strand, within HMPREF1078_RS13555 at 158.603 kb on + strand, within HMPREF1078_RS13555 at 158.613 kb on - strand, within HMPREF1078_RS13555 at 158.810 kb on + strand, within HMPREF1078_RS13555 at 158.812 kb on + strand, within HMPREF1078_RS13555 at 158.813 kb on - strand, within HMPREF1078_RS13555 at 158.813 kb on - strand, within HMPREF1078_RS13555 at 158.813 kb on - strand, within HMPREF1078_RS13555 at 158.934 kb on - strand, within HMPREF1078_RS13555 at 158.975 kb on + strand at 158.976 kb on - strand at 158.976 kb on - strand at 158.979 kb on + strand at 158.979 kb on + strand at 159.019 kb on - strand at 159.019 kb on - strand at 159.029 kb on - strand at 159.089 kb on + strand, within HMPREF1078_RS13560 at 159.089 kb on + strand, within HMPREF1078_RS13560 at 159.185 kb on + strand, within HMPREF1078_RS13560 at 159.200 kb on - strand, within HMPREF1078_RS13560 at 159.234 kb on + strand, within HMPREF1078_RS13560
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 156,012 + HMPREF1078_RS13545 0.34 -1.5 156,013 - HMPREF1078_RS13545 0.34 -4.6 156,013 - HMPREF1078_RS13545 0.34 -2.8 156,120 + HMPREF1078_RS13545 0.43 -3.6 156,188 + HMPREF1078_RS13545 0.49 -2.3 156,188 + HMPREF1078_RS13545 0.49 -1.8 156,188 + HMPREF1078_RS13545 0.49 -2.1 156,188 + HMPREF1078_RS13545 0.49 -3.7 156,188 + HMPREF1078_RS13545 0.49 -2.2 156,188 + HMPREF1078_RS13545 0.49 -4.3 156,189 - HMPREF1078_RS13545 0.49 -4.0 156,189 - HMPREF1078_RS13545 0.49 -2.4 156,195 - HMPREF1078_RS13545 0.50 -3.2 156,195 - HMPREF1078_RS13545 0.50 -0.8 156,195 - HMPREF1078_RS13545 0.50 -4.1 156,236 + HMPREF1078_RS13545 0.53 -4.4 156,236 + HMPREF1078_RS13545 0.53 -3.6 156,262 - HMPREF1078_RS13545 0.56 +0.3 156,262 - HMPREF1078_RS13545 0.56 -4.1 156,335 + HMPREF1078_RS13545 0.62 -2.9 156,336 - HMPREF1078_RS13545 0.62 -2.6 156,336 - HMPREF1078_RS13545 0.62 -4.5 156,336 - HMPREF1078_RS13545 0.62 -3.1 156,346 - HMPREF1078_RS13545 0.63 -4.9 156,359 + HMPREF1078_RS13545 0.64 -3.5 156,360 - HMPREF1078_RS13545 0.64 -4.4 156,360 - HMPREF1078_RS13545 0.64 -3.1 156,436 - HMPREF1078_RS13545 0.71 -2.8 156,436 - HMPREF1078_RS13545 0.71 -3.9 156,586 + HMPREF1078_RS13545 0.84 -1.8 156,587 - HMPREF1078_RS13545 0.84 -3.3 156,596 + HMPREF1078_RS13545 0.84 -3.0 156,600 - HMPREF1078_RS13545 0.85 -4.5 156,600 - HMPREF1078_RS13545 0.85 -4.4 156,637 + HMPREF1078_RS13545 0.88 -3.0 156,638 - HMPREF1078_RS13545 0.88 -3.4 156,638 - HMPREF1078_RS13545 0.88 -4.1 156,655 + HMPREF1078_RS13545 0.89 -1.7 156,680 + -4.2 156,705 + -4.9 156,705 + -3.3 156,706 - -1.7 156,708 - -3.7 156,713 - -1.2 156,768 + -3.6 156,769 - -3.9 156,771 + -4.2 156,811 - -1.4 156,812 + -0.5 156,813 - +0.7 156,813 - -0.2 156,813 - +1.5 156,816 + -3.5 156,816 + -0.9 156,817 - +0.0 156,832 - +0.2 156,843 + -3.8 156,844 - +0.7 156,847 + -4.1 156,847 + -1.5 156,922 - +1.0 156,954 + -3.6 156,962 - -1.0 156,972 - -0.1 156,983 + -1.7 157,038 + -2.8 157,039 - -1.6 157,039 - +0.4 157,053 + -3.3 157,053 + -3.1 157,096 + HMPREF1078_RS13550 0.11 -3.6 157,096 + HMPREF1078_RS13550 0.11 -3.7 157,096 + HMPREF1078_RS13550 0.11 -1.8 157,118 - HMPREF1078_RS13550 0.12 -0.7 157,137 - HMPREF1078_RS13550 0.14 -0.9 157,147 + HMPREF1078_RS13550 0.15 -1.7 157,156 + HMPREF1078_RS13550 0.15 -3.3 157,156 + HMPREF1078_RS13550 0.15 -4.0 157,157 - HMPREF1078_RS13550 0.15 -1.4 157,247 + HMPREF1078_RS13550 0.22 -2.5 157,336 + HMPREF1078_RS13550 0.29 +0.3 157,337 - HMPREF1078_RS13550 0.29 -1.0 157,337 - HMPREF1078_RS13550 0.29 -0.8 157,337 - HMPREF1078_RS13550 0.29 -1.7 157,366 + HMPREF1078_RS13550 0.31 -3.4 157,472 - HMPREF1078_RS13550 0.39 -1.0 157,533 - HMPREF1078_RS13550 0.44 -0.9 157,533 - HMPREF1078_RS13550 0.44 -0.0 157,616 + HMPREF1078_RS13550 0.50 -2.6 157,629 - HMPREF1078_RS13550 0.51 -3.0 157,629 - HMPREF1078_RS13550 0.51 -2.2 157,732 + HMPREF1078_RS13550 0.59 -2.9 157,734 + HMPREF1078_RS13550 0.59 -2.8 157,735 - HMPREF1078_RS13550 0.59 -2.2 157,776 - HMPREF1078_RS13550 0.62 -4.5 157,787 - HMPREF1078_RS13550 0.63 -1.8 157,798 + HMPREF1078_RS13550 0.64 -4.2 157,798 + HMPREF1078_RS13550 0.64 -3.9 157,840 + HMPREF1078_RS13550 0.67 -1.8 157,840 + HMPREF1078_RS13550 0.67 -1.6 157,841 - HMPREF1078_RS13550 0.67 -0.9 157,842 + HMPREF1078_RS13550 0.67 -1.4 157,842 + HMPREF1078_RS13550 0.67 -2.0 157,842 + HMPREF1078_RS13550 0.67 +0.7 157,842 + HMPREF1078_RS13550 0.67 -3.6 157,843 - HMPREF1078_RS13550 0.67 -1.8 157,890 + HMPREF1078_RS13550 0.71 -1.2 157,890 + HMPREF1078_RS13550 0.71 -2.5 157,890 + HMPREF1078_RS13550 0.71 +0.3 157,891 - HMPREF1078_RS13550 0.71 -4.0 157,891 - HMPREF1078_RS13550 0.71 -1.6 158,004 - HMPREF1078_RS13550 0.80 -2.0 158,004 - HMPREF1078_RS13550 0.80 -2.2 158,027 - HMPREF1078_RS13550 0.81 -3.8 158,027 - HMPREF1078_RS13550 0.81 -2.8 158,027 - HMPREF1078_RS13550 0.81 -2.4 158,027 - HMPREF1078_RS13550 0.81 -0.5 158,028 + HMPREF1078_RS13550 0.81 -2.5 158,029 - HMPREF1078_RS13550 0.82 -3.4 158,029 - HMPREF1078_RS13550 0.82 -3.0 158,029 - HMPREF1078_RS13550 0.82 -1.5 158,044 - HMPREF1078_RS13550 0.83 -1.9 158,065 - HMPREF1078_RS13550 0.84 -2.7 158,067 + HMPREF1078_RS13550 0.84 -0.0 158,068 - HMPREF1078_RS13550 0.84 -2.9 158,084 - HMPREF1078_RS13550 0.86 -1.0 158,084 - HMPREF1078_RS13550 0.86 -3.6 158,180 + -2.5 158,181 - -0.8 158,181 - -3.8 158,188 + -4.2 158,189 - -2.3 158,189 - -2.0 158,189 - -1.3 158,189 - -4.3 158,281 - +0.7 158,284 - -1.7 158,284 - -1.0 158,355 + -0.6 158,377 - -3.1 158,392 + -2.4 158,392 + -3.8 158,396 + -2.9 158,396 + -3.7 158,397 - -2.4 158,397 - -3.5 158,397 - -0.7 158,411 - HMPREF1078_RS13555 0.11 -1.8 158,460 + HMPREF1078_RS13555 0.18 -2.0 158,469 + HMPREF1078_RS13555 0.19 -2.0 158,603 + HMPREF1078_RS13555 0.39 -1.3 158,613 - HMPREF1078_RS13555 0.41 -3.0 158,810 + HMPREF1078_RS13555 0.70 -0.9 158,812 + HMPREF1078_RS13555 0.70 -1.9 158,813 - HMPREF1078_RS13555 0.70 -3.8 158,813 - HMPREF1078_RS13555 0.70 -1.9 158,813 - HMPREF1078_RS13555 0.70 -2.5 158,934 - HMPREF1078_RS13555 0.88 -1.3 158,975 + -3.6 158,976 - -0.5 158,976 - -3.2 158,979 + -1.6 158,979 + -1.7 159,019 - -0.1 159,019 - -1.7 159,029 - +0.0 159,089 + HMPREF1078_RS13560 0.12 -2.9 159,089 + HMPREF1078_RS13560 0.12 -0.0 159,185 + HMPREF1078_RS13560 0.28 -4.1 159,200 - HMPREF1078_RS13560 0.30 -4.0 159,234 + HMPREF1078_RS13560 0.36 -2.0
Or see this region's nucleotide sequence