Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12530 and HMPREF1078_RS12535 are separated by 104 nucleotides HMPREF1078_RS12535 and HMPREF1078_RS12540 are separated by 38 nucleotides
HMPREF1078_RS12530: HMPREF1078_RS12530 - anaerobic ribonucleoside triphosphate reductase, at 511,202 to 513,409
_RS12530
HMPREF1078_RS12535: HMPREF1078_RS12535 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 513,514 to 514,014
_RS12535
HMPREF1078_RS12540: HMPREF1078_RS12540 - threonine/serine exporter family protein, at 514,053 to 515,402
_RS12540
Position (kb) 513
514
515 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 512.667 kb on - strand, within HMPREF1078_RS12530 at 512.870 kb on + strand, within HMPREF1078_RS12530 at 512.870 kb on + strand, within HMPREF1078_RS12530 at 512.871 kb on - strand, within HMPREF1078_RS12530 at 512.871 kb on - strand, within HMPREF1078_RS12530 at 512.872 kb on + strand, within HMPREF1078_RS12530 at 513.018 kb on - strand, within HMPREF1078_RS12530 at 513.020 kb on + strand, within HMPREF1078_RS12530 at 513.020 kb on + strand, within HMPREF1078_RS12530 at 513.023 kb on - strand, within HMPREF1078_RS12530 at 513.023 kb on - strand, within HMPREF1078_RS12530 at 513.051 kb on - strand, within HMPREF1078_RS12530 at 513.118 kb on + strand, within HMPREF1078_RS12530 at 513.119 kb on - strand, within HMPREF1078_RS12530 at 513.199 kb on + strand at 513.200 kb on - strand at 513.202 kb on + strand at 513.209 kb on + strand at 513.302 kb on - strand at 513.318 kb on + strand at 513.319 kb on - strand at 513.319 kb on - strand at 513.431 kb on - strand at 513.431 kb on - strand at 513.431 kb on - strand at 513.433 kb on - strand at 513.441 kb on - strand at 513.442 kb on + strand at 513.445 kb on + strand at 513.446 kb on - strand at 513.448 kb on - strand at 513.466 kb on + strand at 513.482 kb on + strand at 513.580 kb on + strand, within HMPREF1078_RS12535 at 513.675 kb on - strand, within HMPREF1078_RS12535 at 513.802 kb on + strand, within HMPREF1078_RS12535 at 513.812 kb on - strand, within HMPREF1078_RS12535 at 513.862 kb on + strand, within HMPREF1078_RS12535 at 513.863 kb on - strand, within HMPREF1078_RS12535 at 513.878 kb on + strand, within HMPREF1078_RS12535 at 513.878 kb on + strand, within HMPREF1078_RS12535 at 513.879 kb on - strand, within HMPREF1078_RS12535 at 514.021 kb on + strand at 514.030 kb on + strand at 514.038 kb on - strand at 514.038 kb on - strand at 514.070 kb on + strand at 514.071 kb on - strand at 514.253 kb on + strand, within HMPREF1078_RS12540 at 514.273 kb on + strand, within HMPREF1078_RS12540 at 514.282 kb on - strand, within HMPREF1078_RS12540 at 514.282 kb on - strand, within HMPREF1078_RS12540 at 514.412 kb on - strand, within HMPREF1078_RS12540 at 514.551 kb on - strand, within HMPREF1078_RS12540 at 514.555 kb on + strand, within HMPREF1078_RS12540 at 514.556 kb on - strand, within HMPREF1078_RS12540 at 514.605 kb on + strand, within HMPREF1078_RS12540 at 514.605 kb on + strand, within HMPREF1078_RS12540 at 514.605 kb on + strand, within HMPREF1078_RS12540 at 514.606 kb on - strand, within HMPREF1078_RS12540 at 514.606 kb on - strand, within HMPREF1078_RS12540 at 514.607 kb on + strand, within HMPREF1078_RS12540 at 514.825 kb on + strand, within HMPREF1078_RS12540 at 514.825 kb on + strand, within HMPREF1078_RS12540 at 514.826 kb on - strand, within HMPREF1078_RS12540 at 514.862 kb on + strand, within HMPREF1078_RS12540 at 514.869 kb on - strand, within HMPREF1078_RS12540 at 514.871 kb on - strand, within HMPREF1078_RS12540 at 514.871 kb on - strand, within HMPREF1078_RS12540 at 514.938 kb on + strand, within HMPREF1078_RS12540
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 512,667 - HMPREF1078_RS12530 0.66 -2.6 512,870 + HMPREF1078_RS12530 0.76 -2.4 512,870 + HMPREF1078_RS12530 0.76 -3.1 512,871 - HMPREF1078_RS12530 0.76 -0.1 512,871 - HMPREF1078_RS12530 0.76 -0.0 512,872 + HMPREF1078_RS12530 0.76 -3.0 513,018 - HMPREF1078_RS12530 0.82 -2.5 513,020 + HMPREF1078_RS12530 0.82 -1.8 513,020 + HMPREF1078_RS12530 0.82 -2.0 513,023 - HMPREF1078_RS12530 0.82 -2.9 513,023 - HMPREF1078_RS12530 0.82 -2.0 513,051 - HMPREF1078_RS12530 0.84 -1.7 513,118 + HMPREF1078_RS12530 0.87 -0.9 513,119 - HMPREF1078_RS12530 0.87 -2.8 513,199 + -1.9 513,200 - -2.6 513,202 + -2.9 513,209 + -2.3 513,302 - -3.4 513,318 + -1.6 513,319 - -3.4 513,319 - -2.3 513,431 - -4.2 513,431 - -0.3 513,431 - -3.2 513,433 - -4.4 513,441 - -1.7 513,442 + -0.7 513,445 + -0.4 513,446 - -2.3 513,448 - -2.3 513,466 + +0.2 513,482 + +0.1 513,580 + HMPREF1078_RS12535 0.13 -3.1 513,675 - HMPREF1078_RS12535 0.32 -0.9 513,802 + HMPREF1078_RS12535 0.57 -1.4 513,812 - HMPREF1078_RS12535 0.59 -3.5 513,862 + HMPREF1078_RS12535 0.69 -0.9 513,863 - HMPREF1078_RS12535 0.70 -3.2 513,878 + HMPREF1078_RS12535 0.73 -1.0 513,878 + HMPREF1078_RS12535 0.73 -3.4 513,879 - HMPREF1078_RS12535 0.73 -2.6 514,021 + -0.1 514,030 + +0.1 514,038 - -0.4 514,038 - +0.6 514,070 + -1.1 514,071 - +0.3 514,253 + HMPREF1078_RS12540 0.15 +0.3 514,273 + HMPREF1078_RS12540 0.16 -0.8 514,282 - HMPREF1078_RS12540 0.17 -0.4 514,282 - HMPREF1078_RS12540 0.17 +0.2 514,412 - HMPREF1078_RS12540 0.27 -1.4 514,551 - HMPREF1078_RS12540 0.37 -0.3 514,555 + HMPREF1078_RS12540 0.37 -0.3 514,556 - HMPREF1078_RS12540 0.37 -0.4 514,605 + HMPREF1078_RS12540 0.41 -1.8 514,605 + HMPREF1078_RS12540 0.41 -0.7 514,605 + HMPREF1078_RS12540 0.41 +0.4 514,606 - HMPREF1078_RS12540 0.41 +0.2 514,606 - HMPREF1078_RS12540 0.41 -0.8 514,607 + HMPREF1078_RS12540 0.41 -0.8 514,825 + HMPREF1078_RS12540 0.57 -0.7 514,825 + HMPREF1078_RS12540 0.57 +0.3 514,826 - HMPREF1078_RS12540 0.57 +0.5 514,862 + HMPREF1078_RS12540 0.60 +0.6 514,869 - HMPREF1078_RS12540 0.60 -1.2 514,871 - HMPREF1078_RS12540 0.61 -1.6 514,871 - HMPREF1078_RS12540 0.61 +1.3 514,938 + HMPREF1078_RS12540 0.66 -2.1
Or see this region's nucleotide sequence