Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12525 and HMPREF1078_RS12530 are separated by 764 nucleotides HMPREF1078_RS12530 and HMPREF1078_RS12535 are separated by 104 nucleotides HMPREF1078_RS12535 and HMPREF1078_RS12540 are separated by 38 nucleotides
HMPREF1078_RS12525: HMPREF1078_RS12525 - F0F1 ATP synthase subunit gamma, at 509,580 to 510,437
_RS12525
HMPREF1078_RS12530: HMPREF1078_RS12530 - anaerobic ribonucleoside triphosphate reductase, at 511,202 to 513,409
_RS12530
HMPREF1078_RS12535: HMPREF1078_RS12535 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 513,514 to 514,014
_RS12535
HMPREF1078_RS12540: HMPREF1078_RS12540 - threonine/serine exporter family protein, at 514,053 to 515,402
_RS12540
Position (kb) 511
512
513
514 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 510.278 kb on - strand, within HMPREF1078_RS12525 at 510.278 kb on - strand, within HMPREF1078_RS12525 at 510.376 kb on - strand at 510.377 kb on + strand at 510.420 kb on - strand at 510.507 kb on + strand at 510.508 kb on - strand at 510.508 kb on - strand at 510.508 kb on - strand at 510.511 kb on + strand at 510.512 kb on - strand at 510.512 kb on - strand at 510.540 kb on - strand at 510.545 kb on + strand at 510.546 kb on - strand at 510.546 kb on - strand at 510.552 kb on + strand at 510.556 kb on + strand at 510.557 kb on - strand at 510.557 kb on - strand at 510.558 kb on + strand at 510.567 kb on - strand at 510.655 kb on - strand at 510.658 kb on + strand at 510.659 kb on - strand at 510.667 kb on - strand at 510.768 kb on - strand at 510.776 kb on - strand at 510.935 kb on - strand at 511.016 kb on + strand at 511.017 kb on - strand at 511.017 kb on - strand at 511.045 kb on - strand at 511.148 kb on - strand at 511.149 kb on + strand at 511.152 kb on + strand at 511.152 kb on + strand at 511.152 kb on + strand at 511.152 kb on + strand at 511.153 kb on - strand at 511.153 kb on - strand at 511.156 kb on + strand at 511.198 kb on + strand at 511.198 kb on + strand at 511.198 kb on + strand at 511.219 kb on + strand at 511.219 kb on + strand at 511.234 kb on + strand at 511.235 kb on - strand at 511.235 kb on - strand at 511.339 kb on + strand at 511.340 kb on - strand at 511.340 kb on - strand at 511.440 kb on - strand, within HMPREF1078_RS12530 at 511.440 kb on - strand, within HMPREF1078_RS12530 at 511.443 kb on + strand, within HMPREF1078_RS12530 at 511.443 kb on + strand, within HMPREF1078_RS12530 at 511.443 kb on + strand, within HMPREF1078_RS12530 at 511.444 kb on - strand, within HMPREF1078_RS12530 at 511.444 kb on - strand, within HMPREF1078_RS12530 at 511.493 kb on - strand, within HMPREF1078_RS12530 at 511.622 kb on + strand, within HMPREF1078_RS12530 at 511.665 kb on - strand, within HMPREF1078_RS12530 at 511.673 kb on - strand, within HMPREF1078_RS12530 at 511.715 kb on + strand, within HMPREF1078_RS12530 at 511.716 kb on + strand, within HMPREF1078_RS12530 at 511.717 kb on - strand, within HMPREF1078_RS12530 at 511.805 kb on - strand, within HMPREF1078_RS12530 at 511.893 kb on - strand, within HMPREF1078_RS12530 at 511.985 kb on + strand, within HMPREF1078_RS12530 at 511.986 kb on - strand, within HMPREF1078_RS12530 at 512.026 kb on + strand, within HMPREF1078_RS12530 at 512.026 kb on + strand, within HMPREF1078_RS12530 at 512.096 kb on - strand, within HMPREF1078_RS12530 at 512.131 kb on - strand, within HMPREF1078_RS12530 at 512.134 kb on - strand, within HMPREF1078_RS12530 at 512.151 kb on - strand, within HMPREF1078_RS12530 at 512.195 kb on - strand, within HMPREF1078_RS12530 at 512.210 kb on + strand, within HMPREF1078_RS12530 at 512.282 kb on + strand, within HMPREF1078_RS12530 at 512.282 kb on + strand, within HMPREF1078_RS12530 at 512.304 kb on - strand, within HMPREF1078_RS12530 at 512.312 kb on + strand, within HMPREF1078_RS12530 at 512.421 kb on - strand, within HMPREF1078_RS12530 at 512.422 kb on + strand, within HMPREF1078_RS12530 at 512.422 kb on + strand, within HMPREF1078_RS12530 at 512.460 kb on + strand, within HMPREF1078_RS12530 at 512.460 kb on + strand, within HMPREF1078_RS12530 at 512.667 kb on - strand, within HMPREF1078_RS12530 at 512.870 kb on + strand, within HMPREF1078_RS12530 at 512.870 kb on + strand, within HMPREF1078_RS12530 at 512.871 kb on - strand, within HMPREF1078_RS12530 at 512.871 kb on - strand, within HMPREF1078_RS12530 at 512.872 kb on + strand, within HMPREF1078_RS12530 at 513.018 kb on - strand, within HMPREF1078_RS12530 at 513.020 kb on + strand, within HMPREF1078_RS12530 at 513.020 kb on + strand, within HMPREF1078_RS12530 at 513.023 kb on - strand, within HMPREF1078_RS12530 at 513.023 kb on - strand, within HMPREF1078_RS12530 at 513.051 kb on - strand, within HMPREF1078_RS12530 at 513.118 kb on + strand, within HMPREF1078_RS12530 at 513.119 kb on - strand, within HMPREF1078_RS12530 at 513.199 kb on + strand at 513.200 kb on - strand at 513.202 kb on + strand at 513.209 kb on + strand at 513.302 kb on - strand at 513.318 kb on + strand at 513.319 kb on - strand at 513.319 kb on - strand at 513.431 kb on - strand at 513.431 kb on - strand at 513.431 kb on - strand at 513.433 kb on - strand at 513.441 kb on - strand at 513.442 kb on + strand at 513.445 kb on + strand at 513.446 kb on - strand at 513.448 kb on - strand at 513.466 kb on + strand at 513.482 kb on + strand at 513.580 kb on + strand, within HMPREF1078_RS12535 at 513.675 kb on - strand, within HMPREF1078_RS12535 at 513.802 kb on + strand, within HMPREF1078_RS12535 at 513.812 kb on - strand, within HMPREF1078_RS12535 at 513.862 kb on + strand, within HMPREF1078_RS12535 at 513.863 kb on - strand, within HMPREF1078_RS12535 at 513.878 kb on + strand, within HMPREF1078_RS12535 at 513.878 kb on + strand, within HMPREF1078_RS12535 at 513.879 kb on - strand, within HMPREF1078_RS12535 at 514.021 kb on + strand at 514.030 kb on + strand at 514.038 kb on - strand at 514.038 kb on - strand at 514.070 kb on + strand at 514.071 kb on - strand at 514.253 kb on + strand, within HMPREF1078_RS12540 at 514.273 kb on + strand, within HMPREF1078_RS12540 at 514.282 kb on - strand, within HMPREF1078_RS12540 at 514.282 kb on - strand, within HMPREF1078_RS12540
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 510,278 - HMPREF1078_RS12525 0.81 -0.5 510,278 - HMPREF1078_RS12525 0.81 -1.4 510,376 - -0.9 510,377 + -0.1 510,420 - -0.4 510,507 + +0.7 510,508 - +1.8 510,508 - +1.2 510,508 - +0.5 510,511 + +0.2 510,512 - +1.3 510,512 - +1.4 510,540 - +0.4 510,545 + +1.5 510,546 - +1.5 510,546 - +0.3 510,552 + +0.1 510,556 + +1.2 510,557 - -0.2 510,557 - -1.2 510,558 + +1.6 510,567 - +0.1 510,655 - -0.6 510,658 + -0.1 510,659 - +0.4 510,667 - +1.3 510,768 - -0.1 510,776 - +0.4 510,935 - -0.7 511,016 + -0.9 511,017 - +0.4 511,017 - -0.0 511,045 - -0.1 511,148 - -2.1 511,149 + -0.7 511,152 + -2.7 511,152 + +0.8 511,152 + +0.5 511,152 + -0.7 511,153 - -2.3 511,153 - -3.8 511,156 + +0.7 511,198 + -1.3 511,198 + -1.5 511,198 + -3.2 511,219 + -3.4 511,219 + -1.5 511,234 + -2.0 511,235 - -0.5 511,235 - -2.3 511,339 + -1.5 511,340 - -2.4 511,340 - -2.2 511,440 - HMPREF1078_RS12530 0.11 -2.8 511,440 - HMPREF1078_RS12530 0.11 -1.2 511,443 + HMPREF1078_RS12530 0.11 -3.1 511,443 + HMPREF1078_RS12530 0.11 -3.8 511,443 + HMPREF1078_RS12530 0.11 -2.9 511,444 - HMPREF1078_RS12530 0.11 -4.8 511,444 - HMPREF1078_RS12530 0.11 -3.5 511,493 - HMPREF1078_RS12530 0.13 -3.8 511,622 + HMPREF1078_RS12530 0.19 -3.3 511,665 - HMPREF1078_RS12530 0.21 -3.0 511,673 - HMPREF1078_RS12530 0.21 -0.5 511,715 + HMPREF1078_RS12530 0.23 -1.3 511,716 + HMPREF1078_RS12530 0.23 +0.7 511,717 - HMPREF1078_RS12530 0.23 -3.7 511,805 - HMPREF1078_RS12530 0.27 -2.5 511,893 - HMPREF1078_RS12530 0.31 -4.6 511,985 + HMPREF1078_RS12530 0.35 -1.3 511,986 - HMPREF1078_RS12530 0.36 -2.5 512,026 + HMPREF1078_RS12530 0.37 -2.6 512,026 + HMPREF1078_RS12530 0.37 -2.0 512,096 - HMPREF1078_RS12530 0.40 -3.8 512,131 - HMPREF1078_RS12530 0.42 -4.0 512,134 - HMPREF1078_RS12530 0.42 -2.5 512,151 - HMPREF1078_RS12530 0.43 -4.5 512,195 - HMPREF1078_RS12530 0.45 -0.0 512,210 + HMPREF1078_RS12530 0.46 -1.4 512,282 + HMPREF1078_RS12530 0.49 -2.8 512,282 + HMPREF1078_RS12530 0.49 -1.8 512,304 - HMPREF1078_RS12530 0.50 -0.7 512,312 + HMPREF1078_RS12530 0.50 -0.3 512,421 - HMPREF1078_RS12530 0.55 -2.6 512,422 + HMPREF1078_RS12530 0.55 -2.9 512,422 + HMPREF1078_RS12530 0.55 -1.6 512,460 + HMPREF1078_RS12530 0.57 -4.2 512,460 + HMPREF1078_RS12530 0.57 -2.0 512,667 - HMPREF1078_RS12530 0.66 -2.6 512,870 + HMPREF1078_RS12530 0.76 -2.4 512,870 + HMPREF1078_RS12530 0.76 -3.1 512,871 - HMPREF1078_RS12530 0.76 -0.1 512,871 - HMPREF1078_RS12530 0.76 -0.0 512,872 + HMPREF1078_RS12530 0.76 -3.0 513,018 - HMPREF1078_RS12530 0.82 -2.5 513,020 + HMPREF1078_RS12530 0.82 -1.8 513,020 + HMPREF1078_RS12530 0.82 -2.0 513,023 - HMPREF1078_RS12530 0.82 -2.9 513,023 - HMPREF1078_RS12530 0.82 -2.0 513,051 - HMPREF1078_RS12530 0.84 -1.7 513,118 + HMPREF1078_RS12530 0.87 -0.9 513,119 - HMPREF1078_RS12530 0.87 -2.8 513,199 + -1.9 513,200 - -2.6 513,202 + -2.9 513,209 + -2.3 513,302 - -3.4 513,318 + -1.6 513,319 - -3.4 513,319 - -2.3 513,431 - -4.2 513,431 - -0.3 513,431 - -3.2 513,433 - -4.4 513,441 - -1.7 513,442 + -0.7 513,445 + -0.4 513,446 - -2.3 513,448 - -2.3 513,466 + +0.2 513,482 + +0.1 513,580 + HMPREF1078_RS12535 0.13 -3.1 513,675 - HMPREF1078_RS12535 0.32 -0.9 513,802 + HMPREF1078_RS12535 0.57 -1.4 513,812 - HMPREF1078_RS12535 0.59 -3.5 513,862 + HMPREF1078_RS12535 0.69 -0.9 513,863 - HMPREF1078_RS12535 0.70 -3.2 513,878 + HMPREF1078_RS12535 0.73 -1.0 513,878 + HMPREF1078_RS12535 0.73 -3.4 513,879 - HMPREF1078_RS12535 0.73 -2.6 514,021 + -0.1 514,030 + +0.1 514,038 - -0.4 514,038 - +0.6 514,070 + -1.1 514,071 - +0.3 514,253 + HMPREF1078_RS12540 0.15 +0.3 514,273 + HMPREF1078_RS12540 0.16 -0.8 514,282 - HMPREF1078_RS12540 0.17 -0.4 514,282 - HMPREF1078_RS12540 0.17 +0.2
Or see this region's nucleotide sequence