Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11265 and HMPREF1078_RS11270 are separated by 14 nucleotides HMPREF1078_RS11270 and HMPREF1078_RS11275 are separated by 17 nucleotides HMPREF1078_RS11275 and HMPREF1078_RS11280 are separated by 87 nucleotides
HMPREF1078_RS11265: HMPREF1078_RS11265 - outer membrane protein assembly factor BamA, at 173,698 to 176,385
_RS11265
HMPREF1078_RS11270: HMPREF1078_RS11270 - isoprenyl transferase, at 176,400 to 177,143
_RS11270
HMPREF1078_RS11275: HMPREF1078_RS11275 - DUF6089 family protein, at 177,161 to 177,880
_RS11275
HMPREF1078_RS11280: HMPREF1078_RS11280 - DUF6242 domain-containing protein, at 177,968 to 179,395
_RS11280
Position (kb) 177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 176.410 kb on - strand at 177.144 kb on - strand at 177.144 kb on - strand at 177.157 kb on - strand at 177.157 kb on - strand at 177.157 kb on - strand at 177.159 kb on - strand at 177.163 kb on - strand at 177.163 kb on - strand at 177.168 kb on - strand at 177.170 kb on - strand at 177.170 kb on - strand at 177.170 kb on - strand at 177.170 kb on - strand at 177.173 kb on - strand at 177.177 kb on - strand at 177.177 kb on - strand at 177.177 kb on - strand at 177.227 kb on - strand at 177.260 kb on - strand, within HMPREF1078_RS11275 at 177.284 kb on - strand, within HMPREF1078_RS11275 at 177.284 kb on - strand, within HMPREF1078_RS11275 at 177.289 kb on - strand, within HMPREF1078_RS11275 at 177.408 kb on - strand, within HMPREF1078_RS11275 at 177.408 kb on - strand, within HMPREF1078_RS11275 at 177.514 kb on - strand, within HMPREF1078_RS11275 at 177.763 kb on - strand, within HMPREF1078_RS11275 at 177.796 kb on - strand, within HMPREF1078_RS11275 at 177.800 kb on - strand, within HMPREF1078_RS11275 at 177.800 kb on - strand, within HMPREF1078_RS11275 at 177.800 kb on - strand, within HMPREF1078_RS11275 at 177.802 kb on - strand, within HMPREF1078_RS11275 at 177.846 kb on - strand at 177.846 kb on - strand at 177.849 kb on - strand at 177.849 kb on - strand at 177.849 kb on - strand at 177.849 kb on - strand at 177.849 kb on - strand at 177.849 kb on - strand at 177.855 kb on - strand at 177.881 kb on - strand at 177.897 kb on - strand at 177.902 kb on - strand at 177.902 kb on - strand at 177.902 kb on - strand at 177.904 kb on - strand at 177.904 kb on - strand at 177.904 kb on - strand at 177.916 kb on - strand at 177.940 kb on + strand at 177.941 kb on - strand at 177.964 kb on - strand at 177.965 kb on + strand at 177.965 kb on + strand at 177.965 kb on + strand at 177.965 kb on + strand at 177.966 kb on - strand at 177.966 kb on - strand at 177.969 kb on + strand at 177.969 kb on + strand at 177.969 kb on + strand at 177.970 kb on - strand at 177.988 kb on + strand at 178.013 kb on + strand at 178.013 kb on + strand at 178.014 kb on - strand at 178.014 kb on - strand at 178.014 kb on - strand at 178.015 kb on - strand at 178.024 kb on + strand at 178.025 kb on - strand at 178.051 kb on - strand at 178.054 kb on + strand at 178.054 kb on + strand at 178.054 kb on + strand at 178.054 kb on + strand at 178.054 kb on + strand at 178.054 kb on + strand at 178.054 kb on + strand at 178.054 kb on + strand at 178.055 kb on - strand at 178.055 kb on - strand at 178.055 kb on - strand at 178.055 kb on - strand at 178.055 kb on - strand at 178.056 kb on + strand at 178.056 kb on + strand at 178.056 kb on + strand at 178.056 kb on + strand at 178.056 kb on + strand at 178.056 kb on + strand at 178.056 kb on + strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.060 kb on + strand at 178.074 kb on + strand at 178.074 kb on + strand at 178.078 kb on + strand at 178.079 kb on - strand at 178.079 kb on - strand at 178.079 kb on - strand at 178.116 kb on - strand, within HMPREF1078_RS11280 at 178.145 kb on + strand, within HMPREF1078_RS11280 at 178.167 kb on + strand, within HMPREF1078_RS11280 at 178.167 kb on + strand, within HMPREF1078_RS11280 at 178.167 kb on + strand, within HMPREF1078_RS11280 at 178.168 kb on - strand, within HMPREF1078_RS11280 at 178.168 kb on - strand, within HMPREF1078_RS11280 at 178.187 kb on - strand, within HMPREF1078_RS11280 at 178.213 kb on + strand, within HMPREF1078_RS11280 at 178.214 kb on - strand, within HMPREF1078_RS11280 at 178.223 kb on - strand, within HMPREF1078_RS11280 at 178.231 kb on - strand, within HMPREF1078_RS11280 at 178.339 kb on + strand, within HMPREF1078_RS11280 at 178.339 kb on + strand, within HMPREF1078_RS11280 at 178.340 kb on - strand, within HMPREF1078_RS11280 at 178.340 kb on - strand, within HMPREF1078_RS11280 at 178.340 kb on - strand, within HMPREF1078_RS11280 at 178.348 kb on + strand, within HMPREF1078_RS11280 at 178.348 kb on + strand, within HMPREF1078_RS11280 at 178.348 kb on + strand, within HMPREF1078_RS11280 at 178.348 kb on + strand, within HMPREF1078_RS11280 at 178.349 kb on - strand, within HMPREF1078_RS11280 at 178.349 kb on - strand, within HMPREF1078_RS11280 at 178.349 kb on - strand, within HMPREF1078_RS11280 at 178.394 kb on - strand, within HMPREF1078_RS11280 at 178.396 kb on - strand, within HMPREF1078_RS11280 at 178.458 kb on - strand, within HMPREF1078_RS11280 at 178.474 kb on + strand, within HMPREF1078_RS11280 at 178.475 kb on - strand, within HMPREF1078_RS11280 at 178.475 kb on - strand, within HMPREF1078_RS11280 at 178.475 kb on - strand, within HMPREF1078_RS11280 at 178.475 kb on - strand, within HMPREF1078_RS11280 at 178.476 kb on + strand, within HMPREF1078_RS11280 at 178.516 kb on + strand, within HMPREF1078_RS11280 at 178.517 kb on - strand, within HMPREF1078_RS11280 at 178.517 kb on - strand, within HMPREF1078_RS11280 at 178.534 kb on + strand, within HMPREF1078_RS11280 at 178.565 kb on + strand, within HMPREF1078_RS11280 at 178.565 kb on + strand, within HMPREF1078_RS11280 at 178.565 kb on + strand, within HMPREF1078_RS11280 at 178.565 kb on + strand, within HMPREF1078_RS11280 at 178.565 kb on + strand, within HMPREF1078_RS11280 at 178.566 kb on - strand, within HMPREF1078_RS11280 at 178.566 kb on - strand, within HMPREF1078_RS11280 at 178.566 kb on - strand, within HMPREF1078_RS11280 at 178.566 kb on - strand, within HMPREF1078_RS11280 at 178.566 kb on - strand, within HMPREF1078_RS11280 at 178.566 kb on - strand, within HMPREF1078_RS11280 at 178.567 kb on + strand, within HMPREF1078_RS11280 at 178.567 kb on + strand, within HMPREF1078_RS11280 at 178.567 kb on + strand, within HMPREF1078_RS11280 at 178.568 kb on - strand, within HMPREF1078_RS11280 at 178.568 kb on - strand, within HMPREF1078_RS11280 at 178.636 kb on + strand, within HMPREF1078_RS11280 at 178.637 kb on - strand, within HMPREF1078_RS11280 at 178.646 kb on - strand, within HMPREF1078_RS11280 at 178.665 kb on + strand, within HMPREF1078_RS11280 at 178.680 kb on + strand, within HMPREF1078_RS11280 at 178.680 kb on + strand, within HMPREF1078_RS11280 at 178.680 kb on + strand, within HMPREF1078_RS11280 at 178.728 kb on - strand, within HMPREF1078_RS11280 at 178.793 kb on + strand, within HMPREF1078_RS11280 at 178.793 kb on + strand, within HMPREF1078_RS11280 at 178.800 kb on - strand, within HMPREF1078_RS11280 at 178.810 kb on + strand, within HMPREF1078_RS11280 at 178.810 kb on + strand, within HMPREF1078_RS11280 at 178.811 kb on - strand, within HMPREF1078_RS11280 at 178.811 kb on - strand, within HMPREF1078_RS11280 at 178.812 kb on + strand, within HMPREF1078_RS11280 at 178.812 kb on + strand, within HMPREF1078_RS11280 at 178.812 kb on + strand, within HMPREF1078_RS11280 at 178.812 kb on + strand, within HMPREF1078_RS11280 at 178.812 kb on + strand, within HMPREF1078_RS11280 at 178.812 kb on + strand, within HMPREF1078_RS11280 at 178.813 kb on - strand, within HMPREF1078_RS11280 at 178.813 kb on - strand, within HMPREF1078_RS11280 at 178.813 kb on - strand, within HMPREF1078_RS11280 at 178.813 kb on - strand, within HMPREF1078_RS11280 at 178.813 kb on - strand, within HMPREF1078_RS11280 at 178.816 kb on + strand, within HMPREF1078_RS11280 at 178.816 kb on + strand, within HMPREF1078_RS11280 at 178.816 kb on + strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.819 kb on - strand, within HMPREF1078_RS11280 at 178.819 kb on - strand, within HMPREF1078_RS11280 at 178.819 kb on - strand, within HMPREF1078_RS11280 at 178.821 kb on + strand, within HMPREF1078_RS11280 at 178.854 kb on - strand, within HMPREF1078_RS11280
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 176,410 - -1.2 177,144 - +0.1 177,144 - +0.4 177,157 - +0.5 177,157 - +0.5 177,157 - +0.1 177,159 - -0.1 177,163 - +1.8 177,163 - -1.5 177,168 - -0.9 177,170 - -1.3 177,170 - -1.8 177,170 - -1.7 177,170 - -0.4 177,173 - -1.8 177,177 - +0.0 177,177 - -1.2 177,177 - +2.0 177,227 - -0.9 177,260 - HMPREF1078_RS11275 0.14 -2.3 177,284 - HMPREF1078_RS11275 0.17 +0.3 177,284 - HMPREF1078_RS11275 0.17 -0.7 177,289 - HMPREF1078_RS11275 0.18 -1.3 177,408 - HMPREF1078_RS11275 0.34 +0.3 177,408 - HMPREF1078_RS11275 0.34 -1.3 177,514 - HMPREF1078_RS11275 0.49 -1.4 177,763 - HMPREF1078_RS11275 0.84 -2.0 177,796 - HMPREF1078_RS11275 0.88 -0.9 177,800 - HMPREF1078_RS11275 0.89 -0.3 177,800 - HMPREF1078_RS11275 0.89 +1.3 177,800 - HMPREF1078_RS11275 0.89 -0.9 177,802 - HMPREF1078_RS11275 0.89 -1.0 177,846 - -0.3 177,846 - -0.9 177,849 - -0.3 177,849 - +0.7 177,849 - -2.0 177,849 - -1.7 177,849 - -1.2 177,849 - -0.0 177,855 - -0.3 177,881 - -2.2 177,897 - -0.8 177,902 - -2.0 177,902 - +0.1 177,902 - +0.2 177,904 - +0.3 177,904 - -0.4 177,904 - -1.0 177,916 - -0.2 177,940 + -0.0 177,941 - +0.2 177,964 - -0.4 177,965 + -0.4 177,965 + +1.0 177,965 + -1.0 177,965 + +0.9 177,966 - -0.7 177,966 - +0.7 177,969 + +1.2 177,969 + -1.0 177,969 + -1.2 177,970 - +1.6 177,988 + -0.2 178,013 + +1.9 178,013 + +0.5 178,014 - -1.8 178,014 - +2.3 178,014 - -2.7 178,015 - -2.7 178,024 + -1.0 178,025 - -1.3 178,051 - -0.8 178,054 + +0.8 178,054 + -0.5 178,054 + +0.7 178,054 + -0.2 178,054 + +0.2 178,054 + +0.6 178,054 + +0.4 178,054 + -0.1 178,055 - -0.3 178,055 - +0.3 178,055 - -0.1 178,055 - -1.3 178,055 - +1.5 178,056 + -0.1 178,056 + -0.0 178,056 + +1.3 178,056 + +0.7 178,056 + +0.6 178,056 + +0.5 178,056 + -0.9 178,057 - -0.0 178,057 - +0.1 178,057 - -1.9 178,057 - +0.5 178,057 - +0.2 178,057 - -1.5 178,057 - -1.9 178,057 - -0.5 178,057 - -0.6 178,057 - +0.6 178,057 - +0.1 178,057 - +0.2 178,060 + -0.8 178,074 + +0.4 178,074 + +0.9 178,078 + -1.1 178,079 - -1.5 178,079 - -0.5 178,079 - +0.4 178,116 - HMPREF1078_RS11280 0.10 -1.5 178,145 + HMPREF1078_RS11280 0.12 +0.5 178,167 + HMPREF1078_RS11280 0.14 +0.2 178,167 + HMPREF1078_RS11280 0.14 +0.2 178,167 + HMPREF1078_RS11280 0.14 -0.9 178,168 - HMPREF1078_RS11280 0.14 -0.8 178,168 - HMPREF1078_RS11280 0.14 -1.5 178,187 - HMPREF1078_RS11280 0.15 -0.3 178,213 + HMPREF1078_RS11280 0.17 -0.7 178,214 - HMPREF1078_RS11280 0.17 +0.7 178,223 - HMPREF1078_RS11280 0.18 -0.6 178,231 - HMPREF1078_RS11280 0.18 -2.2 178,339 + HMPREF1078_RS11280 0.26 +2.6 178,339 + HMPREF1078_RS11280 0.26 -0.2 178,340 - HMPREF1078_RS11280 0.26 -2.4 178,340 - HMPREF1078_RS11280 0.26 -0.2 178,340 - HMPREF1078_RS11280 0.26 +0.4 178,348 + HMPREF1078_RS11280 0.27 +0.7 178,348 + HMPREF1078_RS11280 0.27 -0.7 178,348 + HMPREF1078_RS11280 0.27 -0.2 178,348 + HMPREF1078_RS11280 0.27 +1.3 178,349 - HMPREF1078_RS11280 0.27 +0.0 178,349 - HMPREF1078_RS11280 0.27 -1.1 178,349 - HMPREF1078_RS11280 0.27 -0.4 178,394 - HMPREF1078_RS11280 0.30 -1.6 178,396 - HMPREF1078_RS11280 0.30 +0.3 178,458 - HMPREF1078_RS11280 0.34 -1.9 178,474 + HMPREF1078_RS11280 0.35 +0.5 178,475 - HMPREF1078_RS11280 0.36 +0.2 178,475 - HMPREF1078_RS11280 0.36 -0.0 178,475 - HMPREF1078_RS11280 0.36 -2.4 178,475 - HMPREF1078_RS11280 0.36 -1.3 178,476 + HMPREF1078_RS11280 0.36 -0.1 178,516 + HMPREF1078_RS11280 0.38 -0.3 178,517 - HMPREF1078_RS11280 0.38 -2.9 178,517 - HMPREF1078_RS11280 0.38 -0.3 178,534 + HMPREF1078_RS11280 0.40 +0.7 178,565 + HMPREF1078_RS11280 0.42 +0.2 178,565 + HMPREF1078_RS11280 0.42 +0.6 178,565 + HMPREF1078_RS11280 0.42 +0.5 178,565 + HMPREF1078_RS11280 0.42 -0.1 178,565 + HMPREF1078_RS11280 0.42 +0.3 178,566 - HMPREF1078_RS11280 0.42 -0.9 178,566 - HMPREF1078_RS11280 0.42 -0.0 178,566 - HMPREF1078_RS11280 0.42 -0.3 178,566 - HMPREF1078_RS11280 0.42 -1.5 178,566 - HMPREF1078_RS11280 0.42 +0.7 178,566 - HMPREF1078_RS11280 0.42 -0.4 178,567 + HMPREF1078_RS11280 0.42 -0.0 178,567 + HMPREF1078_RS11280 0.42 +1.7 178,567 + HMPREF1078_RS11280 0.42 +0.6 178,568 - HMPREF1078_RS11280 0.42 -0.1 178,568 - HMPREF1078_RS11280 0.42 -0.8 178,636 + HMPREF1078_RS11280 0.47 +0.5 178,637 - HMPREF1078_RS11280 0.47 -0.6 178,646 - HMPREF1078_RS11280 0.47 -1.4 178,665 + HMPREF1078_RS11280 0.49 +0.2 178,680 + HMPREF1078_RS11280 0.50 +1.1 178,680 + HMPREF1078_RS11280 0.50 +0.5 178,680 + HMPREF1078_RS11280 0.50 -0.1 178,728 - HMPREF1078_RS11280 0.53 -0.7 178,793 + HMPREF1078_RS11280 0.58 -0.2 178,793 + HMPREF1078_RS11280 0.58 +0.5 178,800 - HMPREF1078_RS11280 0.58 -0.7 178,810 + HMPREF1078_RS11280 0.59 +0.1 178,810 + HMPREF1078_RS11280 0.59 +0.6 178,811 - HMPREF1078_RS11280 0.59 -0.7 178,811 - HMPREF1078_RS11280 0.59 +2.3 178,812 + HMPREF1078_RS11280 0.59 -0.7 178,812 + HMPREF1078_RS11280 0.59 -0.0 178,812 + HMPREF1078_RS11280 0.59 +0.2 178,812 + HMPREF1078_RS11280 0.59 +0.5 178,812 + HMPREF1078_RS11280 0.59 +0.9 178,812 + HMPREF1078_RS11280 0.59 +1.0 178,813 - HMPREF1078_RS11280 0.59 -2.4 178,813 - HMPREF1078_RS11280 0.59 -0.2 178,813 - HMPREF1078_RS11280 0.59 +1.1 178,813 - HMPREF1078_RS11280 0.59 -0.0 178,813 - HMPREF1078_RS11280 0.59 -1.9 178,816 + HMPREF1078_RS11280 0.59 +0.1 178,816 + HMPREF1078_RS11280 0.59 -0.0 178,816 + HMPREF1078_RS11280 0.59 +0.2 178,817 - HMPREF1078_RS11280 0.59 +1.3 178,817 - HMPREF1078_RS11280 0.59 -2.2 178,817 - HMPREF1078_RS11280 0.59 +0.5 178,817 - HMPREF1078_RS11280 0.59 -0.1 178,817 - HMPREF1078_RS11280 0.59 -1.3 178,817 - HMPREF1078_RS11280 0.59 -0.0 178,817 - HMPREF1078_RS11280 0.59 +0.7 178,817 - HMPREF1078_RS11280 0.59 -0.8 178,817 - HMPREF1078_RS11280 0.59 +0.4 178,819 - HMPREF1078_RS11280 0.60 -0.8 178,819 - HMPREF1078_RS11280 0.60 +0.0 178,819 - HMPREF1078_RS11280 0.60 +0.8 178,821 + HMPREF1078_RS11280 0.60 +0.4 178,854 - HMPREF1078_RS11280 0.62 +0.3
Or see this region's nucleotide sequence