Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11250 and HMPREF1078_RS11255 are separated by 153 nucleotides HMPREF1078_RS11255 and HMPREF1078_RS11260 are separated by 72 nucleotides HMPREF1078_RS11260 and HMPREF1078_RS11265 are separated by 208 nucleotides
HMPREF1078_RS11250: HMPREF1078_RS11250 - glutamate racemase, at 171,414 to 172,250
_RS11250
HMPREF1078_RS11255: HMPREF1078_RS11255 - OmpH family outer membrane protein, at 172,404 to 172,901
_RS11255
HMPREF1078_RS11260: HMPREF1078_RS11260 - OmpH family outer membrane protein, at 172,974 to 173,489
_RS11260
HMPREF1078_RS11265: HMPREF1078_RS11265 - outer membrane protein assembly factor BamA, at 173,698 to 176,385
_RS11265
Position (kb) 172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 172.265 kb on - strand at 172.265 kb on - strand at 172.265 kb on - strand at 172.265 kb on - strand at 172.269 kb on - strand at 172.275 kb on - strand at 172.275 kb on - strand at 172.275 kb on - strand at 172.275 kb on - strand at 172.329 kb on - strand at 172.329 kb on - strand at 172.333 kb on - strand at 172.358 kb on - strand at 172.383 kb on - strand at 172.388 kb on - strand at 172.388 kb on - strand at 172.397 kb on - strand at 172.401 kb on - strand at 172.401 kb on - strand at 172.401 kb on - strand at 172.403 kb on - strand at 172.406 kb on - strand at 172.406 kb on - strand at 172.406 kb on - strand at 172.410 kb on - strand at 172.940 kb on - strand at 172.968 kb on - strand at 172.989 kb on + strand at 172.989 kb on + strand at 172.990 kb on - strand at 172.996 kb on - strand at 173.013 kb on + strand at 173.015 kb on + strand at 173.016 kb on - strand at 173.016 kb on - strand at 173.043 kb on - strand, within HMPREF1078_RS11260 at 173.078 kb on - strand, within HMPREF1078_RS11260 at 173.114 kb on - strand, within HMPREF1078_RS11260 at 173.114 kb on - strand, within HMPREF1078_RS11260 at 173.114 kb on - strand, within HMPREF1078_RS11260 at 173.186 kb on + strand, within HMPREF1078_RS11260 at 173.265 kb on + strand, within HMPREF1078_RS11260 at 173.265 kb on + strand, within HMPREF1078_RS11260 at 173.266 kb on - strand, within HMPREF1078_RS11260 at 173.290 kb on + strand, within HMPREF1078_RS11260 at 173.291 kb on - strand, within HMPREF1078_RS11260 at 173.291 kb on - strand, within HMPREF1078_RS11260 at 173.397 kb on + strand, within HMPREF1078_RS11260 at 173.397 kb on + strand, within HMPREF1078_RS11260 at 173.397 kb on + strand, within HMPREF1078_RS11260 at 173.398 kb on - strand, within HMPREF1078_RS11260 at 173.399 kb on + strand, within HMPREF1078_RS11260 at 173.399 kb on + strand, within HMPREF1078_RS11260 at 173.399 kb on + strand, within HMPREF1078_RS11260 at 173.400 kb on - strand, within HMPREF1078_RS11260 at 173.400 kb on - strand, within HMPREF1078_RS11260 at 173.400 kb on - strand, within HMPREF1078_RS11260 at 173.400 kb on - strand, within HMPREF1078_RS11260 at 173.400 kb on - strand, within HMPREF1078_RS11260 at 173.400 kb on - strand, within HMPREF1078_RS11260 at 173.401 kb on + strand, within HMPREF1078_RS11260 at 173.401 kb on + strand, within HMPREF1078_RS11260 at 173.401 kb on + strand, within HMPREF1078_RS11260 at 173.408 kb on + strand, within HMPREF1078_RS11260 at 173.408 kb on + strand, within HMPREF1078_RS11260 at 173.408 kb on + strand, within HMPREF1078_RS11260 at 173.408 kb on + strand, within HMPREF1078_RS11260 at 173.409 kb on - strand, within HMPREF1078_RS11260 at 173.409 kb on - strand, within HMPREF1078_RS11260 at 173.412 kb on + strand, within HMPREF1078_RS11260 at 173.412 kb on + strand, within HMPREF1078_RS11260 at 173.412 kb on + strand, within HMPREF1078_RS11260 at 173.413 kb on - strand, within HMPREF1078_RS11260 at 173.413 kb on - strand, within HMPREF1078_RS11260 at 173.413 kb on - strand, within HMPREF1078_RS11260 at 173.413 kb on - strand, within HMPREF1078_RS11260 at 173.470 kb on - strand at 173.470 kb on - strand at 173.477 kb on + strand at 173.489 kb on + strand at 173.489 kb on + strand at 173.502 kb on + strand at 173.504 kb on + strand at 173.505 kb on - strand at 173.505 kb on - strand at 173.509 kb on - strand at 173.509 kb on - strand at 173.575 kb on - strand at 173.580 kb on + strand at 173.673 kb on + strand at 173.673 kb on + strand at 173.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 172,265 - +0.1 172,265 - +0.1 172,265 - -0.6 172,265 - +0.1 172,269 - -0.3 172,275 - +0.3 172,275 - -0.2 172,275 - +1.1 172,275 - -0.7 172,329 - -0.8 172,329 - -0.7 172,333 - -0.5 172,358 - -0.3 172,383 - -0.4 172,388 - +1.7 172,388 - +0.9 172,397 - +0.1 172,401 - +0.4 172,401 - +0.2 172,401 - +0.1 172,403 - +0.2 172,406 - -0.2 172,406 - -0.2 172,406 - -0.2 172,410 - -0.5 172,940 - -0.5 172,968 - -1.2 172,989 + -1.5 172,989 + -3.0 172,990 - -1.3 172,996 - +0.7 173,013 + -1.4 173,015 + -0.0 173,016 - -1.0 173,016 - -0.3 173,043 - HMPREF1078_RS11260 0.13 -1.2 173,078 - HMPREF1078_RS11260 0.20 -0.0 173,114 - HMPREF1078_RS11260 0.27 -1.6 173,114 - HMPREF1078_RS11260 0.27 -1.9 173,114 - HMPREF1078_RS11260 0.27 -2.0 173,186 + HMPREF1078_RS11260 0.41 -2.1 173,265 + HMPREF1078_RS11260 0.56 -1.9 173,265 + HMPREF1078_RS11260 0.56 -2.1 173,266 - HMPREF1078_RS11260 0.57 +1.3 173,290 + HMPREF1078_RS11260 0.61 -1.3 173,291 - HMPREF1078_RS11260 0.61 -1.7 173,291 - HMPREF1078_RS11260 0.61 -0.5 173,397 + HMPREF1078_RS11260 0.82 +0.3 173,397 + HMPREF1078_RS11260 0.82 -0.5 173,397 + HMPREF1078_RS11260 0.82 -0.0 173,398 - HMPREF1078_RS11260 0.82 +0.3 173,399 + HMPREF1078_RS11260 0.82 -1.4 173,399 + HMPREF1078_RS11260 0.82 -1.6 173,399 + HMPREF1078_RS11260 0.82 -1.2 173,400 - HMPREF1078_RS11260 0.83 -2.3 173,400 - HMPREF1078_RS11260 0.83 -2.2 173,400 - HMPREF1078_RS11260 0.83 -0.3 173,400 - HMPREF1078_RS11260 0.83 -2.3 173,400 - HMPREF1078_RS11260 0.83 -2.6 173,400 - HMPREF1078_RS11260 0.83 -0.0 173,401 + HMPREF1078_RS11260 0.83 -1.7 173,401 + HMPREF1078_RS11260 0.83 +0.3 173,401 + HMPREF1078_RS11260 0.83 -0.0 173,408 + HMPREF1078_RS11260 0.84 -0.9 173,408 + HMPREF1078_RS11260 0.84 -0.7 173,408 + HMPREF1078_RS11260 0.84 -0.7 173,408 + HMPREF1078_RS11260 0.84 +0.7 173,409 - HMPREF1078_RS11260 0.84 -1.6 173,409 - HMPREF1078_RS11260 0.84 +1.3 173,412 + HMPREF1078_RS11260 0.85 +0.7 173,412 + HMPREF1078_RS11260 0.85 -1.0 173,412 + HMPREF1078_RS11260 0.85 -0.0 173,413 - HMPREF1078_RS11260 0.85 +0.3 173,413 - HMPREF1078_RS11260 0.85 -0.5 173,413 - HMPREF1078_RS11260 0.85 -1.8 173,413 - HMPREF1078_RS11260 0.85 -0.9 173,470 - -1.5 173,470 - -2.2 173,477 + -0.3 173,489 + -0.9 173,489 + -0.7 173,502 + -0.3 173,504 + -1.2 173,505 - -0.0 173,505 - -2.3 173,509 - +1.5 173,509 - -1.5 173,575 - +0.4 173,580 + -0.9 173,673 + +1.1 173,673 + -0.9 173,688 - +0.3
Or see this region's nucleotide sequence