Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11190 and HMPREF1078_RS11195 are separated by 111 nucleotides HMPREF1078_RS11195 and HMPREF1078_RS11200 are separated by 197 nucleotides HMPREF1078_RS11200 and HMPREF1078_RS11205 are separated by 115 nucleotides HMPREF1078_RS11205 and HMPREF1078_RS11210 are separated by 20 nucleotides
HMPREF1078_RS11190: HMPREF1078_RS11190 - DoxX family protein, at 158,385 to 158,825
_RS11190
HMPREF1078_RS11195: HMPREF1078_RS11195 - tRNA-Arg, at 158,937 to 159,010
_RS11195
HMPREF1078_RS11200: HMPREF1078_RS11200 - aspartate--ammonia ligase, at 159,208 to 160,245
_RS11200
HMPREF1078_RS11205: HMPREF1078_RS11205 - uracil-DNA glycosylase, at 160,361 to 161,023
_RS11205
HMPREF1078_RS11210: HMPREF1078_RS11210 - putative LPS assembly protein LptD, at 161,044 to 163,809
_RS11210
Position (kb) 159
160
161 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 158.227 kb on + strand at 158.227 kb on + strand at 158.228 kb on - strand at 158.228 kb on - strand at 158.228 kb on - strand at 158.273 kb on + strand at 158.273 kb on + strand at 158.273 kb on + strand at 158.274 kb on - strand at 158.274 kb on - strand at 158.284 kb on + strand at 158.329 kb on - strand at 158.329 kb on - strand at 158.356 kb on - strand at 158.356 kb on - strand at 158.357 kb on + strand at 158.357 kb on + strand at 158.357 kb on + strand at 158.357 kb on + strand at 158.358 kb on - strand at 158.358 kb on - strand at 158.363 kb on + strand at 158.363 kb on + strand at 158.364 kb on - strand at 158.376 kb on + strand at 158.377 kb on - strand at 158.378 kb on + strand at 158.379 kb on - strand at 158.379 kb on - strand at 158.399 kb on + strand at 158.399 kb on + strand at 158.400 kb on - strand at 158.401 kb on + strand at 158.403 kb on + strand at 158.404 kb on - strand at 158.415 kb on + strand at 158.415 kb on + strand at 158.416 kb on - strand at 158.424 kb on + strand at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.456 kb on - strand, within HMPREF1078_RS11190 at 158.469 kb on + strand, within HMPREF1078_RS11190 at 158.469 kb on + strand, within HMPREF1078_RS11190 at 158.470 kb on - strand, within HMPREF1078_RS11190 at 158.470 kb on - strand, within HMPREF1078_RS11190 at 158.483 kb on + strand, within HMPREF1078_RS11190 at 158.483 kb on + strand, within HMPREF1078_RS11190 at 158.484 kb on - strand, within HMPREF1078_RS11190 at 158.484 kb on - strand, within HMPREF1078_RS11190 at 158.523 kb on + strand, within HMPREF1078_RS11190 at 158.524 kb on - strand, within HMPREF1078_RS11190 at 158.592 kb on + strand, within HMPREF1078_RS11190 at 158.593 kb on - strand, within HMPREF1078_RS11190 at 158.594 kb on + strand, within HMPREF1078_RS11190 at 158.613 kb on + strand, within HMPREF1078_RS11190 at 158.614 kb on - strand, within HMPREF1078_RS11190 at 158.614 kb on - strand, within HMPREF1078_RS11190 at 158.614 kb on - strand, within HMPREF1078_RS11190 at 158.649 kb on - strand, within HMPREF1078_RS11190 at 158.656 kb on - strand, within HMPREF1078_RS11190 at 158.656 kb on - strand, within HMPREF1078_RS11190 at 158.656 kb on - strand, within HMPREF1078_RS11190 at 158.693 kb on + strand, within HMPREF1078_RS11190 at 158.733 kb on + strand, within HMPREF1078_RS11190 at 158.825 kb on + strand at 158.825 kb on + strand at 158.826 kb on - strand at 158.847 kb on + strand at 158.859 kb on + strand at 158.872 kb on + strand at 159.163 kb on + strand at 159.192 kb on - strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.206 kb on - strand at 159.206 kb on - strand at 159.206 kb on - strand at 159.206 kb on - strand at 159.206 kb on - strand at 159.207 kb on + strand at 159.207 kb on + strand at 159.207 kb on + strand at 159.207 kb on + strand at 159.215 kb on - strand at 159.215 kb on - strand at 159.223 kb on - strand at 159.223 kb on - strand at 159.223 kb on - strand at 159.235 kb on + strand at 159.235 kb on + strand at 159.236 kb on - strand at 159.236 kb on - strand at 159.237 kb on + strand at 159.237 kb on + strand at 159.237 kb on + strand at 159.237 kb on + strand at 159.238 kb on - strand at 159.238 kb on - strand at 159.238 kb on - strand at 159.238 kb on - strand at 159.245 kb on + strand at 159.254 kb on + strand at 159.254 kb on + strand at 159.321 kb on - strand, within HMPREF1078_RS11200 at 159.369 kb on + strand, within HMPREF1078_RS11200 at 159.477 kb on + strand, within HMPREF1078_RS11200 at 159.514 kb on - strand, within HMPREF1078_RS11200 at 159.517 kb on + strand, within HMPREF1078_RS11200 at 159.517 kb on + strand, within HMPREF1078_RS11200 at 159.534 kb on + strand, within HMPREF1078_RS11200 at 159.563 kb on + strand, within HMPREF1078_RS11200 at 159.572 kb on + strand, within HMPREF1078_RS11200 at 159.572 kb on + strand, within HMPREF1078_RS11200 at 159.572 kb on + strand, within HMPREF1078_RS11200 at 159.572 kb on + strand, within HMPREF1078_RS11200 at 159.572 kb on + strand, within HMPREF1078_RS11200 at 159.572 kb on + strand, within HMPREF1078_RS11200 at 159.573 kb on - strand, within HMPREF1078_RS11200 at 159.573 kb on - strand, within HMPREF1078_RS11200 at 159.574 kb on + strand, within HMPREF1078_RS11200 at 159.574 kb on + strand, within HMPREF1078_RS11200 at 159.574 kb on + strand, within HMPREF1078_RS11200 at 159.575 kb on - strand, within HMPREF1078_RS11200 at 159.648 kb on - strand, within HMPREF1078_RS11200 at 159.671 kb on + strand, within HMPREF1078_RS11200 at 159.671 kb on + strand, within HMPREF1078_RS11200 at 159.672 kb on - strand, within HMPREF1078_RS11200 at 159.672 kb on - strand, within HMPREF1078_RS11200 at 159.672 kb on - strand, within HMPREF1078_RS11200 at 159.676 kb on - strand, within HMPREF1078_RS11200 at 159.692 kb on - strand, within HMPREF1078_RS11200 at 159.717 kb on + strand, within HMPREF1078_RS11200 at 159.718 kb on - strand, within HMPREF1078_RS11200 at 159.817 kb on + strand, within HMPREF1078_RS11200 at 159.849 kb on + strand, within HMPREF1078_RS11200 at 159.849 kb on + strand, within HMPREF1078_RS11200 at 159.850 kb on - strand, within HMPREF1078_RS11200 at 159.854 kb on + strand, within HMPREF1078_RS11200 at 159.893 kb on - strand, within HMPREF1078_RS11200 at 159.999 kb on + strand, within HMPREF1078_RS11200 at 160.000 kb on - strand, within HMPREF1078_RS11200 at 160.068 kb on - strand, within HMPREF1078_RS11200 at 160.068 kb on - strand, within HMPREF1078_RS11200 at 160.106 kb on + strand, within HMPREF1078_RS11200 at 160.111 kb on - strand, within HMPREF1078_RS11200 at 160.143 kb on + strand at 160.143 kb on + strand at 160.143 kb on + strand at 160.143 kb on + strand at 160.143 kb on + strand at 160.188 kb on + strand at 160.188 kb on + strand at 160.189 kb on - strand at 160.189 kb on - strand at 160.190 kb on + strand at 160.190 kb on + strand at 160.231 kb on - strand at 160.234 kb on + strand at 160.234 kb on + strand at 160.235 kb on - strand at 160.244 kb on - strand at 160.244 kb on - strand at 160.244 kb on - strand at 160.284 kb on - strand at 160.287 kb on - strand at 160.293 kb on - strand at 160.297 kb on - strand at 160.354 kb on + strand at 160.361 kb on - strand at 160.492 kb on + strand, within HMPREF1078_RS11205 at 160.492 kb on + strand, within HMPREF1078_RS11205 at 160.493 kb on - strand, within HMPREF1078_RS11205 at 160.493 kb on - strand, within HMPREF1078_RS11205 at 160.493 kb on - strand, within HMPREF1078_RS11205 at 160.662 kb on + strand, within HMPREF1078_RS11205 at 160.663 kb on - strand, within HMPREF1078_RS11205 at 160.774 kb on + strand, within HMPREF1078_RS11205 at 160.835 kb on - strand, within HMPREF1078_RS11205 at 160.841 kb on + strand, within HMPREF1078_RS11205 at 160.842 kb on - strand, within HMPREF1078_RS11205 at 160.842 kb on - strand, within HMPREF1078_RS11205 at 160.905 kb on + strand, within HMPREF1078_RS11205 at 160.986 kb on - strand at 161.013 kb on + strand at 161.021 kb on + strand at 161.022 kb on - strand at 161.026 kb on - strand at 161.026 kb on - strand at 161.026 kb on - strand at 161.026 kb on - strand at 161.046 kb on - strand at 161.069 kb on + strand at 161.069 kb on + strand at 161.070 kb on - strand at 161.070 kb on - strand at 161.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 158,227 + +0.8 158,227 + -0.6 158,228 - +1.2 158,228 - -0.2 158,228 - +2.5 158,273 + -1.0 158,273 + -1.5 158,273 + +0.4 158,274 - -0.3 158,274 - -0.4 158,284 + -1.6 158,329 - -0.9 158,329 - -1.0 158,356 - +0.2 158,356 - -1.3 158,357 + -0.8 158,357 + +0.4 158,357 + -0.3 158,357 + -0.1 158,358 - +0.7 158,358 - -3.2 158,363 + -0.7 158,363 + -0.2 158,364 - +0.4 158,376 + +0.1 158,377 - +0.2 158,378 + +0.7 158,379 - -0.9 158,379 - +0.1 158,399 + -0.2 158,399 + -0.5 158,400 - -1.3 158,401 + +0.0 158,403 + -1.2 158,404 - +0.5 158,415 + +0.2 158,415 + -0.2 158,416 - +0.7 158,424 + -0.8 158,455 + HMPREF1078_RS11190 0.16 +0.1 158,455 + HMPREF1078_RS11190 0.16 -0.1 158,455 + HMPREF1078_RS11190 0.16 -0.4 158,455 + HMPREF1078_RS11190 0.16 -0.0 158,455 + HMPREF1078_RS11190 0.16 +1.3 158,456 - HMPREF1078_RS11190 0.16 +1.0 158,469 + HMPREF1078_RS11190 0.19 +0.2 158,469 + HMPREF1078_RS11190 0.19 +0.0 158,470 - HMPREF1078_RS11190 0.19 -0.6 158,470 - HMPREF1078_RS11190 0.19 -0.1 158,483 + HMPREF1078_RS11190 0.22 -0.5 158,483 + HMPREF1078_RS11190 0.22 +1.3 158,484 - HMPREF1078_RS11190 0.22 -0.2 158,484 - HMPREF1078_RS11190 0.22 +0.1 158,523 + HMPREF1078_RS11190 0.31 +0.1 158,524 - HMPREF1078_RS11190 0.32 -0.6 158,592 + HMPREF1078_RS11190 0.47 +0.1 158,593 - HMPREF1078_RS11190 0.47 +0.8 158,594 + HMPREF1078_RS11190 0.47 -0.7 158,613 + HMPREF1078_RS11190 0.52 -0.2 158,614 - HMPREF1078_RS11190 0.52 -0.2 158,614 - HMPREF1078_RS11190 0.52 -0.3 158,614 - HMPREF1078_RS11190 0.52 +0.8 158,649 - HMPREF1078_RS11190 0.60 +0.0 158,656 - HMPREF1078_RS11190 0.61 -0.8 158,656 - HMPREF1078_RS11190 0.61 -0.4 158,656 - HMPREF1078_RS11190 0.61 +0.2 158,693 + HMPREF1078_RS11190 0.70 -1.3 158,733 + HMPREF1078_RS11190 0.79 -0.4 158,825 + -0.0 158,825 + -0.1 158,826 - -0.2 158,847 + -0.9 158,859 + -1.7 158,872 + -0.1 159,163 + -0.8 159,192 - -1.7 159,205 + -0.4 159,205 + -0.1 159,205 + -2.2 159,205 + -0.7 159,205 + -2.4 159,205 + -1.1 159,205 + -0.6 159,205 + -0.5 159,205 + +0.6 159,205 + -0.9 159,205 + -0.8 159,206 - -2.5 159,206 - -3.2 159,206 - -0.9 159,206 - -1.0 159,206 - -3.8 159,207 + -0.4 159,207 + -1.3 159,207 + -2.4 159,207 + +1.3 159,215 - -2.8 159,215 - -3.1 159,223 - -1.5 159,223 - -3.0 159,223 - -1.0 159,235 + -3.8 159,235 + -1.1 159,236 - -2.2 159,236 - -0.9 159,237 + -3.2 159,237 + -2.9 159,237 + -2.5 159,237 + -1.4 159,238 - -2.4 159,238 - -2.1 159,238 - -0.5 159,238 - -0.9 159,245 + -3.1 159,254 + -3.4 159,254 + -3.2 159,321 - HMPREF1078_RS11200 0.11 -1.3 159,369 + HMPREF1078_RS11200 0.16 -3.8 159,477 + HMPREF1078_RS11200 0.26 -1.3 159,514 - HMPREF1078_RS11200 0.29 -0.7 159,517 + HMPREF1078_RS11200 0.30 -2.5 159,517 + HMPREF1078_RS11200 0.30 -1.6 159,534 + HMPREF1078_RS11200 0.31 -3.4 159,563 + HMPREF1078_RS11200 0.34 -1.7 159,572 + HMPREF1078_RS11200 0.35 -2.1 159,572 + HMPREF1078_RS11200 0.35 -1.4 159,572 + HMPREF1078_RS11200 0.35 -2.3 159,572 + HMPREF1078_RS11200 0.35 -3.5 159,572 + HMPREF1078_RS11200 0.35 -3.6 159,572 + HMPREF1078_RS11200 0.35 -1.0 159,573 - HMPREF1078_RS11200 0.35 -0.0 159,573 - HMPREF1078_RS11200 0.35 -1.4 159,574 + HMPREF1078_RS11200 0.35 -3.8 159,574 + HMPREF1078_RS11200 0.35 -1.0 159,574 + HMPREF1078_RS11200 0.35 -2.6 159,575 - HMPREF1078_RS11200 0.35 -1.1 159,648 - HMPREF1078_RS11200 0.42 -2.7 159,671 + HMPREF1078_RS11200 0.45 -2.7 159,671 + HMPREF1078_RS11200 0.45 -3.6 159,672 - HMPREF1078_RS11200 0.45 -1.8 159,672 - HMPREF1078_RS11200 0.45 -0.8 159,672 - HMPREF1078_RS11200 0.45 -2.1 159,676 - HMPREF1078_RS11200 0.45 -1.8 159,692 - HMPREF1078_RS11200 0.47 -3.2 159,717 + HMPREF1078_RS11200 0.49 -2.9 159,718 - HMPREF1078_RS11200 0.49 -2.0 159,817 + HMPREF1078_RS11200 0.59 -2.2 159,849 + HMPREF1078_RS11200 0.62 +1.3 159,849 + HMPREF1078_RS11200 0.62 -2.6 159,850 - HMPREF1078_RS11200 0.62 -2.8 159,854 + HMPREF1078_RS11200 0.62 -3.4 159,893 - HMPREF1078_RS11200 0.66 -1.9 159,999 + HMPREF1078_RS11200 0.76 -3.2 160,000 - HMPREF1078_RS11200 0.76 -1.0 160,068 - HMPREF1078_RS11200 0.83 -4.0 160,068 - HMPREF1078_RS11200 0.83 -1.9 160,106 + HMPREF1078_RS11200 0.87 -0.7 160,111 - HMPREF1078_RS11200 0.87 -0.8 160,143 + -3.1 160,143 + -0.7 160,143 + -1.8 160,143 + -1.8 160,143 + -2.4 160,188 + -1.6 160,188 + -2.6 160,189 - -2.7 160,189 - -1.9 160,190 + -2.9 160,190 + -0.6 160,231 - -0.5 160,234 + -2.5 160,234 + -2.5 160,235 - -2.0 160,244 - -1.8 160,244 - -0.7 160,244 - +0.0 160,284 - -0.0 160,287 - +0.7 160,293 - -0.1 160,297 - -1.4 160,354 + +0.2 160,361 - -0.6 160,492 + HMPREF1078_RS11205 0.20 -2.2 160,492 + HMPREF1078_RS11205 0.20 +0.9 160,493 - HMPREF1078_RS11205 0.20 -4.7 160,493 - HMPREF1078_RS11205 0.20 -2.1 160,493 - HMPREF1078_RS11205 0.20 -0.8 160,662 + HMPREF1078_RS11205 0.45 -0.1 160,663 - HMPREF1078_RS11205 0.46 +0.1 160,774 + HMPREF1078_RS11205 0.62 -0.2 160,835 - HMPREF1078_RS11205 0.71 -0.5 160,841 + HMPREF1078_RS11205 0.72 -0.0 160,842 - HMPREF1078_RS11205 0.73 +0.1 160,842 - HMPREF1078_RS11205 0.73 -0.3 160,905 + HMPREF1078_RS11205 0.82 -0.3 160,986 - +0.3 161,013 + +0.5 161,021 + -0.9 161,022 - +0.5 161,026 - +0.2 161,026 - -0.3 161,026 - -0.6 161,026 - -0.4 161,046 - +0.2 161,069 + +0.4 161,069 + +0.1 161,070 - -0.5 161,070 - +0.7 161,070 - +0.6
Or see this region's nucleotide sequence