Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS11160

Experiment: D-Mannose 10 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS11150 and HMPREF1078_RS11155 are separated by 150 nucleotidesHMPREF1078_RS11155 and HMPREF1078_RS11160 are separated by 67 nucleotidesHMPREF1078_RS11160 and HMPREF1078_RS11165 are separated by 67 nucleotides HMPREF1078_RS11150: HMPREF1078_RS11150 - GNAT family N-acetyltransferase, at 152,043 to 152,606 _RS11150 HMPREF1078_RS11155: HMPREF1078_RS11155 - Lrp/AsnC ligand binding domain-containing protein, at 152,757 to 153,230 _RS11155 HMPREF1078_RS11160: HMPREF1078_RS11160 - asparagine--tRNA ligase, at 153,298 to 154,704 _RS11160 HMPREF1078_RS11165: HMPREF1078_RS11165 - pseudouridine synthase, at 154,772 to 156,229 _RS11165 Position (kb) 153 154 155Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 152.377 kb on + strand, within HMPREF1078_RS11150at 152.377 kb on + strand, within HMPREF1078_RS11150at 152.377 kb on + strand, within HMPREF1078_RS11150at 152.378 kb on - strand, within HMPREF1078_RS11150at 152.378 kb on - strand, within HMPREF1078_RS11150at 152.381 kb on + strand, within HMPREF1078_RS11150at 152.381 kb on + strand, within HMPREF1078_RS11150at 152.381 kb on + strand, within HMPREF1078_RS11150at 152.382 kb on - strand, within HMPREF1078_RS11150at 152.382 kb on - strand, within HMPREF1078_RS11150at 152.382 kb on - strand, within HMPREF1078_RS11150at 152.382 kb on - strand, within HMPREF1078_RS11150at 152.382 kb on - strand, within HMPREF1078_RS11150at 152.419 kb on + strand, within HMPREF1078_RS11150at 152.443 kb on + strand, within HMPREF1078_RS11150at 152.443 kb on + strand, within HMPREF1078_RS11150at 152.527 kb on + strand, within HMPREF1078_RS11150at 152.527 kb on + strand, within HMPREF1078_RS11150at 152.528 kb on - strand, within HMPREF1078_RS11150at 152.528 kb on - strand, within HMPREF1078_RS11150at 152.528 kb on - strand, within HMPREF1078_RS11150at 152.528 kb on - strand, within HMPREF1078_RS11150at 152.528 kb on - strand, within HMPREF1078_RS11150at 152.579 kb on + strandat 152.579 kb on + strandat 152.579 kb on + strandat 152.586 kb on + strandat 152.586 kb on + strandat 152.586 kb on + strandat 152.586 kb on + strandat 152.587 kb on - strandat 152.587 kb on - strandat 152.587 kb on - strandat 152.587 kb on - strandat 152.607 kb on - strandat 152.607 kb on - strandat 152.627 kb on + strandat 152.627 kb on + strandat 152.630 kb on + strandat 152.646 kb on + strandat 152.706 kb on + strandat 152.710 kb on - strandat 152.737 kb on + strandat 152.738 kb on - strandat 152.739 kb on + strandat 152.739 kb on + strandat 152.740 kb on - strandat 152.740 kb on - strandat 152.740 kb on - strandat 152.746 kb on - strandat 152.747 kb on + strandat 152.747 kb on + strandat 152.748 kb on - strandat 152.751 kb on + strandat 152.751 kb on + strandat 152.751 kb on + strandat 152.797 kb on + strandat 152.798 kb on - strandat 152.803 kb on + strandat 152.809 kb on + strand, within HMPREF1078_RS11155at 152.810 kb on - strand, within HMPREF1078_RS11155at 152.810 kb on - strand, within HMPREF1078_RS11155at 152.822 kb on + strand, within HMPREF1078_RS11155at 152.852 kb on + strand, within HMPREF1078_RS11155at 152.852 kb on + strand, within HMPREF1078_RS11155at 152.852 kb on + strand, within HMPREF1078_RS11155at 152.852 kb on + strand, within HMPREF1078_RS11155at 152.852 kb on + strand, within HMPREF1078_RS11155at 152.852 kb on + strand, within HMPREF1078_RS11155at 152.853 kb on - strand, within HMPREF1078_RS11155at 152.853 kb on - strand, within HMPREF1078_RS11155at 152.853 kb on - strand, within HMPREF1078_RS11155at 152.853 kb on - strand, within HMPREF1078_RS11155at 152.857 kb on + strand, within HMPREF1078_RS11155at 152.872 kb on + strand, within HMPREF1078_RS11155at 152.872 kb on + strand, within HMPREF1078_RS11155at 152.873 kb on - strand, within HMPREF1078_RS11155at 152.873 kb on - strand, within HMPREF1078_RS11155at 152.883 kb on - strand, within HMPREF1078_RS11155at 152.883 kb on - strand, within HMPREF1078_RS11155at 152.883 kb on - strand, within HMPREF1078_RS11155at 152.883 kb on - strand, within HMPREF1078_RS11155at 152.947 kb on + strand, within HMPREF1078_RS11155at 152.948 kb on - strand, within HMPREF1078_RS11155at 152.948 kb on - strand, within HMPREF1078_RS11155at 152.952 kb on + strand, within HMPREF1078_RS11155at 152.967 kb on + strand, within HMPREF1078_RS11155at 152.967 kb on + strand, within HMPREF1078_RS11155at 152.967 kb on + strand, within HMPREF1078_RS11155at 152.967 kb on + strand, within HMPREF1078_RS11155at 152.967 kb on + strand, within HMPREF1078_RS11155at 152.967 kb on + strand, within HMPREF1078_RS11155at 152.967 kb on + strand, within HMPREF1078_RS11155at 152.967 kb on + strand, within HMPREF1078_RS11155at 152.967 kb on + strand, within HMPREF1078_RS11155at 152.967 kb on + strand, within HMPREF1078_RS11155at 152.968 kb on - strand, within HMPREF1078_RS11155at 152.968 kb on - strand, within HMPREF1078_RS11155at 152.968 kb on - strand, within HMPREF1078_RS11155at 152.968 kb on - strand, within HMPREF1078_RS11155at 152.968 kb on - strand, within HMPREF1078_RS11155at 152.968 kb on - strand, within HMPREF1078_RS11155at 152.968 kb on - strand, within HMPREF1078_RS11155at 152.968 kb on - strand, within HMPREF1078_RS11155at 152.968 kb on - strand, within HMPREF1078_RS11155at 152.968 kb on - strand, within HMPREF1078_RS11155at 152.968 kb on - strand, within HMPREF1078_RS11155at 152.968 kb on - strand, within HMPREF1078_RS11155at 152.968 kb on - strand, within HMPREF1078_RS11155at 152.979 kb on + strand, within HMPREF1078_RS11155at 152.979 kb on + strand, within HMPREF1078_RS11155at 152.980 kb on - strand, within HMPREF1078_RS11155at 152.980 kb on - strand, within HMPREF1078_RS11155at 153.054 kb on + strand, within HMPREF1078_RS11155at 153.069 kb on + strand, within HMPREF1078_RS11155at 153.069 kb on + strand, within HMPREF1078_RS11155at 153.070 kb on - strand, within HMPREF1078_RS11155at 153.070 kb on - strand, within HMPREF1078_RS11155at 153.070 kb on - strand, within HMPREF1078_RS11155at 153.076 kb on + strand, within HMPREF1078_RS11155at 153.077 kb on - strand, within HMPREF1078_RS11155at 153.077 kb on - strand, within HMPREF1078_RS11155at 153.088 kb on + strand, within HMPREF1078_RS11155at 153.089 kb on - strand, within HMPREF1078_RS11155at 153.089 kb on - strand, within HMPREF1078_RS11155at 153.090 kb on + strand, within HMPREF1078_RS11155at 153.090 kb on + strand, within HMPREF1078_RS11155at 153.090 kb on + strand, within HMPREF1078_RS11155at 153.090 kb on + strand, within HMPREF1078_RS11155at 153.091 kb on - strand, within HMPREF1078_RS11155at 153.091 kb on - strand, within HMPREF1078_RS11155at 153.123 kb on - strand, within HMPREF1078_RS11155at 153.131 kb on + strand, within HMPREF1078_RS11155at 153.131 kb on + strand, within HMPREF1078_RS11155at 153.131 kb on + strand, within HMPREF1078_RS11155at 153.131 kb on + strand, within HMPREF1078_RS11155at 153.131 kb on + strand, within HMPREF1078_RS11155at 153.132 kb on - strand, within HMPREF1078_RS11155at 153.132 kb on - strand, within HMPREF1078_RS11155at 153.132 kb on - strand, within HMPREF1078_RS11155at 153.229 kb on - strandat 153.232 kb on + strandat 153.247 kb on - strandat 153.247 kb on - strandat 153.247 kb on - strandat 153.247 kb on - strandat 154.723 kb on - strandat 154.723 kb on - strandat 154.723 kb on - strandat 154.727 kb on - strandat 154.769 kb on - strandat 154.774 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C)
remove
152,377 + HMPREF1078_RS11150 0.59 -0.5
152,377 + HMPREF1078_RS11150 0.59 +0.3
152,377 + HMPREF1078_RS11150 0.59 -0.8
152,378 - HMPREF1078_RS11150 0.59 -0.0
152,378 - HMPREF1078_RS11150 0.59 +0.4
152,381 + HMPREF1078_RS11150 0.60 -0.0
152,381 + HMPREF1078_RS11150 0.60 -0.5
152,381 + HMPREF1078_RS11150 0.60 -0.2
152,382 - HMPREF1078_RS11150 0.60 +0.7
152,382 - HMPREF1078_RS11150 0.60 +0.1
152,382 - HMPREF1078_RS11150 0.60 +0.1
152,382 - HMPREF1078_RS11150 0.60 -0.4
152,382 - HMPREF1078_RS11150 0.60 -0.1
152,419 + HMPREF1078_RS11150 0.67 +0.3
152,443 + HMPREF1078_RS11150 0.71 +0.6
152,443 + HMPREF1078_RS11150 0.71 +0.3
152,527 + HMPREF1078_RS11150 0.86 -1.0
152,527 + HMPREF1078_RS11150 0.86 +0.7
152,528 - HMPREF1078_RS11150 0.86 +0.4
152,528 - HMPREF1078_RS11150 0.86 +1.3
152,528 - HMPREF1078_RS11150 0.86 +0.0
152,528 - HMPREF1078_RS11150 0.86 +1.3
152,528 - HMPREF1078_RS11150 0.86 +0.2
152,579 + +0.0
152,579 + +0.5
152,579 + +0.5
152,586 + -0.0
152,586 + -0.5
152,586 + +0.3
152,586 + -0.4
152,587 - -0.4
152,587 - -0.5
152,587 - -1.5
152,587 - -3.7
152,607 - -0.6
152,607 - +0.5
152,627 + +0.3
152,627 + +0.3
152,630 + -0.1
152,646 + +1.1
152,706 + -0.7
152,710 - -0.2
152,737 + +0.6
152,738 - -0.2
152,739 + -0.3
152,739 + +0.9
152,740 - -0.8
152,740 - -1.2
152,740 - -0.4
152,746 - -0.2
152,747 + -0.1
152,747 + +0.0
152,748 - +0.7
152,751 + +1.8
152,751 + +0.8
152,751 + +0.2
152,797 + +2.9
152,798 - +1.3
152,803 + +0.3
152,809 + HMPREF1078_RS11155 0.11 +0.2
152,810 - HMPREF1078_RS11155 0.11 +0.6
152,810 - HMPREF1078_RS11155 0.11 +0.1
152,822 + HMPREF1078_RS11155 0.14 +0.6
152,852 + HMPREF1078_RS11155 0.20 +0.5
152,852 + HMPREF1078_RS11155 0.20 -0.0
152,852 + HMPREF1078_RS11155 0.20 +0.6
152,852 + HMPREF1078_RS11155 0.20 -0.3
152,852 + HMPREF1078_RS11155 0.20 +0.4
152,852 + HMPREF1078_RS11155 0.20 -0.6
152,853 - HMPREF1078_RS11155 0.20 -0.2
152,853 - HMPREF1078_RS11155 0.20 +0.2
152,853 - HMPREF1078_RS11155 0.20 -0.6
152,853 - HMPREF1078_RS11155 0.20 +1.1
152,857 + HMPREF1078_RS11155 0.21 +0.6
152,872 + HMPREF1078_RS11155 0.24 +0.8
152,872 + HMPREF1078_RS11155 0.24 -0.0
152,873 - HMPREF1078_RS11155 0.24 +1.1
152,873 - HMPREF1078_RS11155 0.24 -0.5
152,883 - HMPREF1078_RS11155 0.27 +1.3
152,883 - HMPREF1078_RS11155 0.27 +0.6
152,883 - HMPREF1078_RS11155 0.27 +0.7
152,883 - HMPREF1078_RS11155 0.27 +1.4
152,947 + HMPREF1078_RS11155 0.40 +0.8
152,948 - HMPREF1078_RS11155 0.40 +0.1
152,948 - HMPREF1078_RS11155 0.40 -0.7
152,952 + HMPREF1078_RS11155 0.41 +0.1
152,967 + HMPREF1078_RS11155 0.44 +0.8
152,967 + HMPREF1078_RS11155 0.44 +0.9
152,967 + HMPREF1078_RS11155 0.44 -0.4
152,967 + HMPREF1078_RS11155 0.44 +1.0
152,967 + HMPREF1078_RS11155 0.44 +0.8
152,967 + HMPREF1078_RS11155 0.44 +0.2
152,967 + HMPREF1078_RS11155 0.44 -0.6
152,967 + HMPREF1078_RS11155 0.44 -0.1
152,967 + HMPREF1078_RS11155 0.44 +1.5
152,967 + HMPREF1078_RS11155 0.44 -0.4
152,968 - HMPREF1078_RS11155 0.45 +0.1
152,968 - HMPREF1078_RS11155 0.45 -0.1
152,968 - HMPREF1078_RS11155 0.45 -0.1
152,968 - HMPREF1078_RS11155 0.45 +0.4
152,968 - HMPREF1078_RS11155 0.45 -0.7
152,968 - HMPREF1078_RS11155 0.45 -0.5
152,968 - HMPREF1078_RS11155 0.45 -0.9
152,968 - HMPREF1078_RS11155 0.45 +0.3
152,968 - HMPREF1078_RS11155 0.45 +0.4
152,968 - HMPREF1078_RS11155 0.45 +0.7
152,968 - HMPREF1078_RS11155 0.45 +0.2
152,968 - HMPREF1078_RS11155 0.45 +0.6
152,968 - HMPREF1078_RS11155 0.45 +0.6
152,979 + HMPREF1078_RS11155 0.47 +0.7
152,979 + HMPREF1078_RS11155 0.47 +0.5
152,980 - HMPREF1078_RS11155 0.47 +0.4
152,980 - HMPREF1078_RS11155 0.47 +0.3
153,054 + HMPREF1078_RS11155 0.63 -1.0
153,069 + HMPREF1078_RS11155 0.66 +1.2
153,069 + HMPREF1078_RS11155 0.66 +1.2
153,070 - HMPREF1078_RS11155 0.66 -1.1
153,070 - HMPREF1078_RS11155 0.66 +0.5
153,070 - HMPREF1078_RS11155 0.66 +1.5
153,076 + HMPREF1078_RS11155 0.67 +0.1
153,077 - HMPREF1078_RS11155 0.68 +1.4
153,077 - HMPREF1078_RS11155 0.68 -0.4
153,088 + HMPREF1078_RS11155 0.70 +0.6
153,089 - HMPREF1078_RS11155 0.70 +0.4
153,089 - HMPREF1078_RS11155 0.70 +1.5
153,090 + HMPREF1078_RS11155 0.70 +0.5
153,090 + HMPREF1078_RS11155 0.70 +0.1
153,090 + HMPREF1078_RS11155 0.70 +1.6
153,090 + HMPREF1078_RS11155 0.70 +2.0
153,091 - HMPREF1078_RS11155 0.70 +0.7
153,091 - HMPREF1078_RS11155 0.70 -1.2
153,123 - HMPREF1078_RS11155 0.77 -0.7
153,131 + HMPREF1078_RS11155 0.79 +0.3
153,131 + HMPREF1078_RS11155 0.79 +1.4
153,131 + HMPREF1078_RS11155 0.79 -0.2
153,131 + HMPREF1078_RS11155 0.79 +0.9
153,131 + HMPREF1078_RS11155 0.79 +0.2
153,132 - HMPREF1078_RS11155 0.79 +0.1
153,132 - HMPREF1078_RS11155 0.79 -1.3
153,132 - HMPREF1078_RS11155 0.79 +1.8
153,229 - +0.2
153,232 + +0.3
153,247 - +0.7
153,247 - +0.6
153,247 - +0.5
153,247 - -0.0
154,723 - +1.3
154,723 - -0.8
154,723 - +0.2
154,727 - +0.6
154,769 - -0.3
154,774 - -0.7

Or see this region's nucleotide sequence