Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10965

Experiment: D-Mannose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS10960 and HMPREF1078_RS10965 are separated by 86 nucleotidesHMPREF1078_RS10965 and HMPREF1078_RS10970 are separated by 30 nucleotides HMPREF1078_RS10960: HMPREF1078_RS10960 - efflux RND transporter periplasmic adaptor subunit, at 104,552 to 105,673 _RS10960 HMPREF1078_RS10965: HMPREF1078_RS10965 - ABC transporter permease, at 105,760 to 107,022 _RS10965 HMPREF1078_RS10970: HMPREF1078_RS10970 - ABC transporter permease, at 107,053 to 108,318 _RS10970 Position (kb) 105 106 107 108Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 104.828 kb on - strand, within HMPREF1078_RS10960at 104.828 kb on - strand, within HMPREF1078_RS10960at 104.828 kb on - strand, within HMPREF1078_RS10960at 104.881 kb on + strand, within HMPREF1078_RS10960at 104.892 kb on + strand, within HMPREF1078_RS10960at 104.892 kb on + strand, within HMPREF1078_RS10960at 104.893 kb on - strand, within HMPREF1078_RS10960at 104.893 kb on - strand, within HMPREF1078_RS10960at 104.927 kb on - strand, within HMPREF1078_RS10960at 104.987 kb on + strand, within HMPREF1078_RS10960at 105.007 kb on + strand, within HMPREF1078_RS10960at 105.008 kb on - strand, within HMPREF1078_RS10960at 105.008 kb on - strand, within HMPREF1078_RS10960at 105.157 kb on + strand, within HMPREF1078_RS10960at 105.163 kb on + strand, within HMPREF1078_RS10960at 105.175 kb on + strand, within HMPREF1078_RS10960at 105.226 kb on - strand, within HMPREF1078_RS10960at 105.263 kb on - strand, within HMPREF1078_RS10960at 105.263 kb on - strand, within HMPREF1078_RS10960at 105.274 kb on + strand, within HMPREF1078_RS10960at 105.274 kb on + strand, within HMPREF1078_RS10960at 105.301 kb on + strand, within HMPREF1078_RS10960at 105.301 kb on + strand, within HMPREF1078_RS10960at 105.302 kb on - strand, within HMPREF1078_RS10960at 105.355 kb on + strand, within HMPREF1078_RS10960at 105.380 kb on - strand, within HMPREF1078_RS10960at 105.627 kb on - strandat 105.673 kb on + strandat 105.674 kb on - strandat 105.674 kb on - strandat 105.677 kb on + strandat 105.678 kb on - strandat 105.678 kb on - strandat 105.680 kb on - strandat 105.688 kb on - strandat 105.710 kb on + strandat 105.718 kb on - strandat 105.718 kb on - strandat 105.719 kb on + strandat 105.724 kb on - strandat 105.744 kb on - strandat 105.781 kb on + strandat 105.850 kb on + strandat 105.851 kb on - strandat 105.910 kb on - strand, within HMPREF1078_RS10965at 106.031 kb on - strand, within HMPREF1078_RS10965at 106.032 kb on + strand, within HMPREF1078_RS10965at 106.033 kb on - strand, within HMPREF1078_RS10965at 106.036 kb on - strand, within HMPREF1078_RS10965at 106.107 kb on + strand, within HMPREF1078_RS10965at 106.108 kb on - strand, within HMPREF1078_RS10965at 106.108 kb on - strand, within HMPREF1078_RS10965at 106.110 kb on + strand, within HMPREF1078_RS10965at 106.173 kb on + strand, within HMPREF1078_RS10965at 106.173 kb on + strand, within HMPREF1078_RS10965at 106.174 kb on - strand, within HMPREF1078_RS10965at 106.176 kb on + strand, within HMPREF1078_RS10965at 106.192 kb on - strand, within HMPREF1078_RS10965at 106.192 kb on - strand, within HMPREF1078_RS10965at 106.217 kb on - strand, within HMPREF1078_RS10965at 106.222 kb on - strand, within HMPREF1078_RS10965at 106.233 kb on + strand, within HMPREF1078_RS10965at 106.234 kb on - strand, within HMPREF1078_RS10965at 106.302 kb on + strand, within HMPREF1078_RS10965at 106.466 kb on + strand, within HMPREF1078_RS10965at 106.466 kb on + strand, within HMPREF1078_RS10965at 106.483 kb on + strand, within HMPREF1078_RS10965at 106.483 kb on + strand, within HMPREF1078_RS10965at 106.483 kb on + strand, within HMPREF1078_RS10965at 106.484 kb on - strand, within HMPREF1078_RS10965at 106.484 kb on - strand, within HMPREF1078_RS10965at 106.484 kb on - strand, within HMPREF1078_RS10965at 106.487 kb on + strand, within HMPREF1078_RS10965at 106.487 kb on + strand, within HMPREF1078_RS10965at 106.488 kb on - strand, within HMPREF1078_RS10965at 106.488 kb on - strand, within HMPREF1078_RS10965at 106.536 kb on + strand, within HMPREF1078_RS10965at 106.537 kb on - strand, within HMPREF1078_RS10965at 106.557 kb on + strand, within HMPREF1078_RS10965at 106.557 kb on + strand, within HMPREF1078_RS10965at 106.557 kb on + strand, within HMPREF1078_RS10965at 106.605 kb on + strand, within HMPREF1078_RS10965at 106.606 kb on - strand, within HMPREF1078_RS10965at 106.655 kb on + strand, within HMPREF1078_RS10965at 106.655 kb on + strand, within HMPREF1078_RS10965at 106.655 kb on + strand, within HMPREF1078_RS10965at 106.655 kb on + strand, within HMPREF1078_RS10965at 106.655 kb on + strand, within HMPREF1078_RS10965at 106.655 kb on + strand, within HMPREF1078_RS10965at 106.656 kb on - strand, within HMPREF1078_RS10965at 106.656 kb on - strand, within HMPREF1078_RS10965at 106.656 kb on - strand, within HMPREF1078_RS10965at 106.656 kb on - strand, within HMPREF1078_RS10965at 106.656 kb on - strand, within HMPREF1078_RS10965at 106.656 kb on - strand, within HMPREF1078_RS10965at 106.656 kb on - strand, within HMPREF1078_RS10965at 106.656 kb on - strand, within HMPREF1078_RS10965at 106.659 kb on + strand, within HMPREF1078_RS10965at 106.682 kb on - strand, within HMPREF1078_RS10965at 106.686 kb on + strand, within HMPREF1078_RS10965at 106.725 kb on - strand, within HMPREF1078_RS10965at 106.797 kb on + strand, within HMPREF1078_RS10965at 106.798 kb on - strand, within HMPREF1078_RS10965at 106.798 kb on - strand, within HMPREF1078_RS10965at 106.799 kb on + strand, within HMPREF1078_RS10965at 106.800 kb on - strand, within HMPREF1078_RS10965at 106.800 kb on - strand, within HMPREF1078_RS10965at 106.800 kb on - strand, within HMPREF1078_RS10965at 106.971 kb on + strandat 106.993 kb on + strandat 107.014 kb on - strandat 107.014 kb on - strandat 107.021 kb on - strandat 107.021 kb on - strandat 107.021 kb on - strandat 107.028 kb on + strandat 107.029 kb on - strandat 107.029 kb on - strandat 107.111 kb on + strandat 107.193 kb on + strand, within HMPREF1078_RS10970at 107.193 kb on + strand, within HMPREF1078_RS10970at 107.193 kb on + strand, within HMPREF1078_RS10970at 107.194 kb on - strand, within HMPREF1078_RS10970at 107.275 kb on + strand, within HMPREF1078_RS10970at 107.291 kb on + strand, within HMPREF1078_RS10970at 107.291 kb on + strand, within HMPREF1078_RS10970at 107.292 kb on - strand, within HMPREF1078_RS10970at 107.401 kb on + strand, within HMPREF1078_RS10970at 107.473 kb on - strand, within HMPREF1078_RS10970at 107.473 kb on - strand, within HMPREF1078_RS10970at 107.535 kb on + strand, within HMPREF1078_RS10970at 107.647 kb on - strand, within HMPREF1078_RS10970at 107.712 kb on - strand, within HMPREF1078_RS10970at 107.712 kb on - strand, within HMPREF1078_RS10970at 107.747 kb on + strand, within HMPREF1078_RS10970at 107.747 kb on + strand, within HMPREF1078_RS10970at 107.747 kb on + strand, within HMPREF1078_RS10970at 107.747 kb on + strand, within HMPREF1078_RS10970at 107.748 kb on - strand, within HMPREF1078_RS10970at 107.790 kb on - strand, within HMPREF1078_RS10970at 107.875 kb on + strand, within HMPREF1078_RS10970at 107.875 kb on + strand, within HMPREF1078_RS10970at 107.875 kb on + strand, within HMPREF1078_RS10970at 107.875 kb on + strand, within HMPREF1078_RS10970at 107.876 kb on - strand, within HMPREF1078_RS10970at 107.876 kb on - strand, within HMPREF1078_RS10970at 107.876 kb on - strand, within HMPREF1078_RS10970at 107.876 kb on - strand, within HMPREF1078_RS10970at 107.876 kb on - strand, within HMPREF1078_RS10970at 107.877 kb on + strand, within HMPREF1078_RS10970at 107.878 kb on - strand, within HMPREF1078_RS10970at 107.887 kb on - strand, within HMPREF1078_RS10970at 107.967 kb on + strand, within HMPREF1078_RS10970at 107.967 kb on + strand, within HMPREF1078_RS10970at 107.969 kb on + strand, within HMPREF1078_RS10970at 107.970 kb on - strand, within HMPREF1078_RS10970at 107.970 kb on - strand, within HMPREF1078_RS10970at 107.981 kb on + strand, within HMPREF1078_RS10970

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C)
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104,828 - HMPREF1078_RS10960 0.25 -3.0
104,828 - HMPREF1078_RS10960 0.25 -0.3
104,828 - HMPREF1078_RS10960 0.25 +0.2
104,881 + HMPREF1078_RS10960 0.29 -0.4
104,892 + HMPREF1078_RS10960 0.30 -0.5
104,892 + HMPREF1078_RS10960 0.30 +0.7
104,893 - HMPREF1078_RS10960 0.30 -0.3
104,893 - HMPREF1078_RS10960 0.30 +0.9
104,927 - HMPREF1078_RS10960 0.33 -0.1
104,987 + HMPREF1078_RS10960 0.39 +0.1
105,007 + HMPREF1078_RS10960 0.41 -0.0
105,008 - HMPREF1078_RS10960 0.41 +0.1
105,008 - HMPREF1078_RS10960 0.41 +0.0
105,157 + HMPREF1078_RS10960 0.54 -1.9
105,163 + HMPREF1078_RS10960 0.54 +0.5
105,175 + HMPREF1078_RS10960 0.56 -2.2
105,226 - HMPREF1078_RS10960 0.60 +0.1
105,263 - HMPREF1078_RS10960 0.63 -1.0
105,263 - HMPREF1078_RS10960 0.63 -0.4
105,274 + HMPREF1078_RS10960 0.64 +0.0
105,274 + HMPREF1078_RS10960 0.64 +0.8
105,301 + HMPREF1078_RS10960 0.67 +1.3
105,301 + HMPREF1078_RS10960 0.67 -0.7
105,302 - HMPREF1078_RS10960 0.67 +0.2
105,355 + HMPREF1078_RS10960 0.72 -0.3
105,380 - HMPREF1078_RS10960 0.74 -1.8
105,627 - -1.4
105,673 + -1.3
105,674 - -0.3
105,674 - -0.8
105,677 + +0.5
105,678 - +0.1
105,678 - +0.6
105,680 - -0.1
105,688 - +0.8
105,710 + -3.7
105,718 - -0.2
105,718 - -0.8
105,719 + -0.7
105,724 - -0.5
105,744 - +0.2
105,781 + -0.6
105,850 + -1.9
105,851 - -0.7
105,910 - HMPREF1078_RS10965 0.12 -0.7
106,031 - HMPREF1078_RS10965 0.21 -0.1
106,032 + HMPREF1078_RS10965 0.22 +0.5
106,033 - HMPREF1078_RS10965 0.22 +1.0
106,036 - HMPREF1078_RS10965 0.22 +0.6
106,107 + HMPREF1078_RS10965 0.27 +0.2
106,108 - HMPREF1078_RS10965 0.28 +0.7
106,108 - HMPREF1078_RS10965 0.28 +0.9
106,110 + HMPREF1078_RS10965 0.28 -0.4
106,173 + HMPREF1078_RS10965 0.33 -0.1
106,173 + HMPREF1078_RS10965 0.33 +0.6
106,174 - HMPREF1078_RS10965 0.33 -1.9
106,176 + HMPREF1078_RS10965 0.33 +0.2
106,192 - HMPREF1078_RS10965 0.34 +0.6
106,192 - HMPREF1078_RS10965 0.34 -2.1
106,217 - HMPREF1078_RS10965 0.36 +0.5
106,222 - HMPREF1078_RS10965 0.37 -1.2
106,233 + HMPREF1078_RS10965 0.37 +0.3
106,234 - HMPREF1078_RS10965 0.38 +0.4
106,302 + HMPREF1078_RS10965 0.43 +0.5
106,466 + HMPREF1078_RS10965 0.56 -0.5
106,466 + HMPREF1078_RS10965 0.56 +1.0
106,483 + HMPREF1078_RS10965 0.57 +0.1
106,483 + HMPREF1078_RS10965 0.57 +0.5
106,483 + HMPREF1078_RS10965 0.57 +0.2
106,484 - HMPREF1078_RS10965 0.57 -0.1
106,484 - HMPREF1078_RS10965 0.57 +0.0
106,484 - HMPREF1078_RS10965 0.57 +0.3
106,487 + HMPREF1078_RS10965 0.58 +0.6
106,487 + HMPREF1078_RS10965 0.58 -0.4
106,488 - HMPREF1078_RS10965 0.58 +0.5
106,488 - HMPREF1078_RS10965 0.58 -0.5
106,536 + HMPREF1078_RS10965 0.61 +0.3
106,537 - HMPREF1078_RS10965 0.62 +3.3
106,557 + HMPREF1078_RS10965 0.63 -0.1
106,557 + HMPREF1078_RS10965 0.63 +0.3
106,557 + HMPREF1078_RS10965 0.63 +0.8
106,605 + HMPREF1078_RS10965 0.67 +1.5
106,606 - HMPREF1078_RS10965 0.67 -0.7
106,655 + HMPREF1078_RS10965 0.71 -0.2
106,655 + HMPREF1078_RS10965 0.71 +0.3
106,655 + HMPREF1078_RS10965 0.71 +0.2
106,655 + HMPREF1078_RS10965 0.71 -0.3
106,655 + HMPREF1078_RS10965 0.71 +0.4
106,655 + HMPREF1078_RS10965 0.71 +1.7
106,656 - HMPREF1078_RS10965 0.71 +0.8
106,656 - HMPREF1078_RS10965 0.71 -0.3
106,656 - HMPREF1078_RS10965 0.71 -1.1
106,656 - HMPREF1078_RS10965 0.71 -1.1
106,656 - HMPREF1078_RS10965 0.71 +0.9
106,656 - HMPREF1078_RS10965 0.71 -0.3
106,656 - HMPREF1078_RS10965 0.71 +0.4
106,656 - HMPREF1078_RS10965 0.71 -0.3
106,659 + HMPREF1078_RS10965 0.71 +0.7
106,682 - HMPREF1078_RS10965 0.73 -0.3
106,686 + HMPREF1078_RS10965 0.73 +0.2
106,725 - HMPREF1078_RS10965 0.76 -0.8
106,797 + HMPREF1078_RS10965 0.82 +0.9
106,798 - HMPREF1078_RS10965 0.82 -1.5
106,798 - HMPREF1078_RS10965 0.82 -0.7
106,799 + HMPREF1078_RS10965 0.82 +0.1
106,800 - HMPREF1078_RS10965 0.82 +0.0
106,800 - HMPREF1078_RS10965 0.82 -0.1
106,800 - HMPREF1078_RS10965 0.82 +0.2
106,971 + +0.4
106,993 + -1.4
107,014 - +0.3
107,014 - +0.0
107,021 - +1.3
107,021 - +0.3
107,021 - -0.3
107,028 + +0.7
107,029 - +0.1
107,029 - -0.4
107,111 + +0.5
107,193 + HMPREF1078_RS10970 0.11 +0.8
107,193 + HMPREF1078_RS10970 0.11 -0.0
107,193 + HMPREF1078_RS10970 0.11 +1.2
107,194 - HMPREF1078_RS10970 0.11 -0.2
107,275 + HMPREF1078_RS10970 0.18 -0.2
107,291 + HMPREF1078_RS10970 0.19 +0.3
107,291 + HMPREF1078_RS10970 0.19 +1.1
107,292 - HMPREF1078_RS10970 0.19 +0.1
107,401 + HMPREF1078_RS10970 0.27 +1.3
107,473 - HMPREF1078_RS10970 0.33 +0.0
107,473 - HMPREF1078_RS10970 0.33 +0.8
107,535 + HMPREF1078_RS10970 0.38 +0.9
107,647 - HMPREF1078_RS10970 0.47 +0.0
107,712 - HMPREF1078_RS10970 0.52 -0.8
107,712 - HMPREF1078_RS10970 0.52 -1.2
107,747 + HMPREF1078_RS10970 0.55 +0.2
107,747 + HMPREF1078_RS10970 0.55 -0.0
107,747 + HMPREF1078_RS10970 0.55 -0.5
107,747 + HMPREF1078_RS10970 0.55 +1.5
107,748 - HMPREF1078_RS10970 0.55 +0.1
107,790 - HMPREF1078_RS10970 0.58 -0.3
107,875 + HMPREF1078_RS10970 0.65 -0.0
107,875 + HMPREF1078_RS10970 0.65 +0.6
107,875 + HMPREF1078_RS10970 0.65 +0.8
107,875 + HMPREF1078_RS10970 0.65 -0.2
107,876 - HMPREF1078_RS10970 0.65 +0.1
107,876 - HMPREF1078_RS10970 0.65 +0.3
107,876 - HMPREF1078_RS10970 0.65 +0.1
107,876 - HMPREF1078_RS10970 0.65 -0.1
107,876 - HMPREF1078_RS10970 0.65 -0.1
107,877 + HMPREF1078_RS10970 0.65 +0.4
107,878 - HMPREF1078_RS10970 0.65 -0.6
107,887 - HMPREF1078_RS10970 0.66 -0.6
107,967 + HMPREF1078_RS10970 0.72 -0.1
107,967 + HMPREF1078_RS10970 0.72 +0.1
107,969 + HMPREF1078_RS10970 0.72 -0.1
107,970 - HMPREF1078_RS10970 0.72 -0.9
107,970 - HMPREF1078_RS10970 0.72 +1.3
107,981 + HMPREF1078_RS10970 0.73 +0.9

Or see this region's nucleotide sequence